mRNA_L-elsbetiae_contig16525.4423.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16525.4423.1
Unique NamemRNA_L-elsbetiae_contig16525.4423.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16525.4423.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 3.240e-5
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:  169 AGRLFAVGALATLATTSAADGRHHAPCHQRRSLQSSSNIDFINAIAGTPFTSAEEDAVQLQ 351
            AGRL  +G  A L  +S      HAP H  R+LQ+SSNI+FI A+ GT FT+ E+  +QLQ
Sbjct:    7 AGRL--LGLCALLRRSSGVFAGSHAPHHGHRNLQTSSNIEFIEAVVGTAFTTDEQSGLQLQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16525.4423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G022_ECTSI3.240e-549.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16525contigL-elsbetiae_contig16525:475..1686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.8415546-CDS-L-elsbetiae_contig16525:474..5841622815684.8415546-CDS-L-elsbetiae_contig16525:474..584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16525 475..584 +
1691683036.673074-CDS-L-elsbetiae_contig16525:474..5841691683036.673074-CDS-L-elsbetiae_contig16525:474..584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16525 475..584 +
1622815684.8570855-CDS-L-elsbetiae_contig16525:1433..16861622815684.8570855-CDS-L-elsbetiae_contig16525:1433..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16525 1434..1686 +
1691683036.6821752-CDS-L-elsbetiae_contig16525:1433..16861691683036.6821752-CDS-L-elsbetiae_contig16525:1433..1686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16525 1434..1686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16525.4423.1prot_L-elsbetiae_contig16525.4423.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16525 475..1686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16525.4423.1

>prot_L-elsbetiae_contig16525.4423.1 ID=prot_L-elsbetiae_contig16525.4423.1|Name=mRNA_L-elsbetiae_contig16525.4423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
LRQRGHTFSFTTTTRIFSQGCGLRAGKKIYTLPVCPSARLARQGMVVMGA
SHWVMKAGRLFAVGALATLATTSAADGRHHAPCHQRRSLQSSSNIDFINA
IAGTPFTSAEEDAVQLQVWR*
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mRNA from alignment at L-elsbetiae_contig16525:475..1686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16525.4423.1 ID=mRNA_L-elsbetiae_contig16525.4423.1|Name=mRNA_L-elsbetiae_contig16525.4423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig16525:475..1686+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCGACAGCGCGGCCACACCTTCTCCTTCACAACTACAACTCGGATTTT
CTCCCAAGGGTGCGGGCTGCGAGCTGGTAAGAAGATATATACTCTTCCTG
TGTGTCCAAGGTAAGAACGTAGACCGGTGGCGCTAGTGAGAGGGAGATAT
GAGAGAGAAGCAGGCGTGAGCAGGTTGCGTGAGAGACTAGGACAGCAGTT
GCGCGTCAATCGTGTGACTAATTTAGTTTATTCTAACGTGCCCGCGGGCG
TGTGTGTCTTCTGCAGCTACATAGAGGACAATTGGGGTTTACTGTACTTC
TCCAGGGGCACCGCTACTTGCGTGTGTGAAGAGCGCTGGTTTGCTTGCGT
CCTTGTCTACGTAAGTCTGGGGTCGGAATCGGAACGCAGGTGTTCCCAAA
CAGATAATCTGTACCATGTAAACATCTGTACATCCGTGGTGGTGCAACAA
CGCCCTGTAATAAACGTTTCCATTCAGCATGCGTGGGTGCGCAGTCAATG
TACTCGGGCGAGAGACTGCGGGGTGCGAGCCGGCGACGTTCCCTGTAGAC
TAGGTTGTAAGTATAATTGCAGCCCCGGTTATCATATCTCGGTTCGCACA
GGCTTCCCGGTTTCGCCCGTCAGGCAACAACGGCTTTCACGCCTGACGTC
TTCGAAGACCACATTGTGCGTCATATATTCGCCTGTCCTGCCCACAGCGC
CAATCCTCCCAAGACATAGATACAGCCCTGCTGTTTTTTGTACGTATGTA
TGTTGTATGTATGTACACCAGCGCCGCGTTGCAGCCGAATTTTTTTACGA
TTGTCATGTCAGAACTTTTCGAATTTCCATGATCCAATCCGGAGATGAAG
GTGAGAGCAACACGGCATCTATGTAGACTATGGATGAAAGTTTCGGCGCC
AGTACTCTCCACTTCCCTCTCCTGTCTGCGTTATTGTTGATGAACCTTGA
CCTTTGCAGTGCGAGGCTCGCGCGGCAAGGCATGGTTGTGATGGGCGCTT
CGCATTGGGTCATGAAAGCGGGAAGACTTTTTGCCGTCGGTGCTCTTGCC
ACCCTCGCAACCACCTCGGCAGCTGATGGTCGTCATCATGCGCCCTGCCA
CCAGCGCCGCTCTCTTCAGAGCTCCTCCAACATTGATTTCATCAACGCTA
TCGCGGGCACGCCGTTCACCTCTGCAGAGGAGGACGCGGTGCAGCTGCAG
GTGTGGAGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16525:475..1686+

>mRNA_L-elsbetiae_contig16525.4423.1 ID=mRNA_L-elsbetiae_contig16525.4423.1|Name=mRNA_L-elsbetiae_contig16525.4423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig16525:475..1686+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCGACAGCGCGGCCACACCTTCTCCTTCACAACTACAACTCGGATTTT
CTCCCAAGGGTGCGGGCTGCGAGCTGGTAAGAAGATATATACTCTTCCTG
TGTGTCCAAGCTTCGACAGCGCGGCCACACCTTCTCCTTCACAACTACAA
CTCGGATTTTCTCCCAAGGGTGCGGGCTGCGAGCTGGTAAGAAGATATAT
ACTCTTCCTGTGTGTCCAAGTGCGAGGCTCGCGCGGCAAGGCATGGTTGT
GATGGGCGCTTCGCATTGGGTCATGAAAGCGGGAAGACTTTTTGCCGTCG
GTGCTCTTGCCACCCTCGCAACCACCTCGGCAGCTGATGGTCGTCATCAT
GCGCCCTGCCACCAGCGCCGCTCTCTTCAGAGCTCCTCCAACATTGATTT
CATCAACGCTATCGCGGGCACGCCGTTCACCTCTGCAGAGGAGGACGCGG
TGCAGCTGCAGGTGTGGAGATGATGCGAGGCTCGCGCGGCAAGGCATGGT
TGTGATGGGCGCTTCGCATTGGGTCATGAAAGCGGGAAGACTTTTTGCCG
TCGGTGCTCTTGCCACCCTCGCAACCACCTCGGCAGCTGATGGTCGTCAT
CATGCGCCCTGCCACCAGCGCCGCTCTCTTCAGAGCTCCTCCAACATTGA
TTTCATCAACGCTATCGCGGGCACGCCGTTCACCTCTGCAGAGGAGGACG
CGGTGCAGCTGCAGGTGTGGAGATGA
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