mRNA_L-elsbetiae_contig16520.4421.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16520.4421.1
Unique NamemRNA_L-elsbetiae_contig16520.4421.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16520.4421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16520contigL-elsbetiae_contig16520:3064..3733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size262
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16520.4421.1prot_L-elsbetiae_contig16520.4421.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16520 3171..3716 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.7131217-UTR-L-elsbetiae_contig16520:3063..31701622815684.7131217-UTR-L-elsbetiae_contig16520:3063..3170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16520 3064..3170 +
1691683036.6119764-UTR-L-elsbetiae_contig16520:3063..31701691683036.6119764-UTR-L-elsbetiae_contig16520:3063..3170Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16520 3064..3170 +
1622815684.7469928-UTR-L-elsbetiae_contig16520:3716..37331622815684.7469928-UTR-L-elsbetiae_contig16520:3716..3733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16520 3717..3733 +
1691683036.6369088-UTR-L-elsbetiae_contig16520:3716..37331691683036.6369088-UTR-L-elsbetiae_contig16520:3716..3733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16520 3717..3733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.7259994-CDS-L-elsbetiae_contig16520:3170..32041622815684.7259994-CDS-L-elsbetiae_contig16520:3170..3204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16520 3171..3204 +
1691683036.6207592-CDS-L-elsbetiae_contig16520:3170..32041691683036.6207592-CDS-L-elsbetiae_contig16520:3170..3204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16520 3171..3204 +
1622815684.736293-CDS-L-elsbetiae_contig16520:3612..37161622815684.736293-CDS-L-elsbetiae_contig16520:3612..3716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16520 3613..3716 +
1691683036.6288102-CDS-L-elsbetiae_contig16520:3612..37161691683036.6288102-CDS-L-elsbetiae_contig16520:3612..3716Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16520 3613..3716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16520.4421.1

>prot_L-elsbetiae_contig16520.4421.1 ID=prot_L-elsbetiae_contig16520.4421.1|Name=mRNA_L-elsbetiae_contig16520.4421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
MNKNGVETPRGTGGTGSDWDGECLLCQLTSSRVCSYHKSANFRAG*
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mRNA from alignment at L-elsbetiae_contig16520:3064..3733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16520.4421.1 ID=mRNA_L-elsbetiae_contig16520.4421.1|Name=mRNA_L-elsbetiae_contig16520.4421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=670bp|location=Sequence derived from alignment at L-elsbetiae_contig16520:3064..3733+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCTCAGTAGAGGCTATAAGTAGAGGTAGGGATAGTGGTGTAAGGGGAT
GCGGTCGTACCAAGTAGGGATGAACATGAATGACGCGCAGCATACCATAA
AGATGGTATGAACAAAAATGGAGTTGAGACACCGCGCGGGACATGCAGCG
GTCTGCGCAAAGCGTTACATCCAATTTTTCCAGGTACGAAGTATTAATTA
AGCCGCATTCCGAGCAAAGAGATTATCACAGCAGTGCACAAAAAACACTT
CGAAGGCGTCCACAAACATAGCGTTACATAAAGTCACGCCGCACTCCAAA
CAGCAGGTTTTCCGTAAGTGTGTCAGCAATCAAAGCGTCATCCGACGCAC
TCAGGACAGCAGATATCACGTAAACACGTCAAAAACAATAGTTTCCATGC
TCGTCATTCACAGACCAAGCGTTACATATAATTACGCCGCGTACCGAGCA
GGAAATTTTGCCATCACGTAGAACCACCCTCTATTACCTCGTCACCGACA
AAGAAGCAAGTAATACAGAAGGTATAACAAACGAAAGACCGCTCGCTATC
GGGCGGGACGGGGAGTGACTGGGACGGGGAGTGTCTGCTGTGTCAGTTGA
CGTCGTCGCGTGTCTGCAGCTATCATAAAAGTGCAAATTTCCGCGCCGGG
TAATTAATATTCAAAAAGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16520:3064..3733+

>mRNA_L-elsbetiae_contig16520.4421.1 ID=mRNA_L-elsbetiae_contig16520.4421.1|Name=mRNA_L-elsbetiae_contig16520.4421.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig16520:3064..3733+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAAAAATGGAGTTGAGACACCGCGCGGGAATGAACAAAAATGGAG
TTGAGACACCGCGCGGGACGGGCGGGACGGGGAGTGACTGGGACGGGGAG
TGTCTGCTGTGTCAGTTGACGTCGTCGCGTGTCTGCAGCTATCATAAAAG
TGCAAATTTCCGCGCCGGGTAACGGGCGGGACGGGGAGTGACTGGGACGG
GGAGTGTCTGCTGTGTCAGTTGACGTCGTCGCGTGTCTGCAGCTATCATA
AAAGTGCAAATTTCCGCGCCGGGTAA
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