mRNA_L-elsbetiae_contig165.4406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig165.4406.1
Unique NamemRNA_L-elsbetiae_contig165.4406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: D8LFM0_ECTSI (Peptidyl prolyl cis/trans isomerase like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM0_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 7.830e-45
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GFVNLPLS+FEEW  KLSGEGA+LDAEKDTV+MCHHGMRSNQMAQHL+TKAGFK+VWNVEGGLHAYASHVDSSVGVY
Sbjct:  232 GFVNLPLSKFEEWSDKLSGEGAILDAEKDTVIMCHHGMRSNQMAQHLATKAGFKRVWNVEGGLHAYASHVDSSVGVY 308          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: U5QRK1_9CYAN (tRNA s(4)U8 sulfurtransferase n=1 Tax=Gloeobacter kilaueensis JS1 TaxID=1183438 RepID=U5QRK1_9CYAN)

HSP 1 Score: 87.0 bits (214), Expect = 1.780e-20
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    4 FVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            F+NLPLSQ++EW  +L    A+LD  K+T+V+CHHGMRS  M  +L  + GF  V NV+GG+HAYA +VD SV  Y
Sbjct:   41 FINLPLSQYQEWSPRLD---AILDPAKETIVLCHHGMRSADMCSYL-LRRGFNNVKNVQGGIHAYALYVDQSVPQY 112          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: A0A4D9D039_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D039_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.150e-20
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSK-LSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GF+NLPLSQF EW  K LSGE  +LD +K TVV+CHHG RS Q A  L+++AGF +V+N+ GG+H YA  VDS +  Y
Sbjct:  147 GFLNLPLSQFAEWRPKILSGE--LLDKDKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 222          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: W7TMS8_9STRA (Peptidyl-prolyl cis-trans isomerase c n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMS8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.700e-20
Identity = 44/75 (58.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSK-LSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSV 222
            GF+NLPLSQF EW  K LSGE  +LD  K TVV+CHHG RS Q A  L+++AGF +V+N+ GG+H YA  VDS +
Sbjct:   37 GFLNLPLSQFAEWRPKILSGE--LLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRI 109          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: S8D8K8_9LAMI (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8D8K8_9LAMI)

HSP 1 Score: 88.2 bits (217), Expect = 8.280e-20
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GF  LPL QF +WG  +S E    D EKDT V+CHHGMRS Q+AQ L T+ GFK+V+NV GG+H YA  VD S+ VY
Sbjct:  149 GFKVLPLRQFAKWGPVISSE---FDPEKDTYVLCHHGMRSLQVAQWLQTQ-GFKRVFNVSGGIHEYAVKVDESIPVY 221          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: A0A067EI79_CITSI (Rhodanese domain-containing protein (Fragment) n=2 Tax=Citrus sinensis TaxID=2711 RepID=A0A067EI79_CITSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-19
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GF  LPL QF  WG  ++ +    D +KDT VMCHHGMRS Q+AQ L T+ GF++V+NV GG+HAYA+ VD S+  Y
Sbjct:    7 GFQVLPLRQFGSWGPDITVK---FDPQKDTYVMCHHGMRSLQVAQWLQTQ-GFRRVFNVSGGIHAYATKVDPSIPTY 79          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: I2CR14_NANGC (Peptidyl prolyl cis trans isomerase like protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CR14_NANGC)

HSP 1 Score: 89.0 bits (219), Expect = 1.820e-19
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSK-LSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GF+NLPLSQF EW  K LSGE  +LD  K TVV+CHHG RS Q A  L+++AGF +V+N+ GG+H YA  VDS +  Y
Sbjct:  236 GFLNLPLSQFAEWRPKILSGE--LLDKNKKTVVLCHHGGRSMQFASFLTSQAGFTEVYNLSGGIHMYAQLVDSRIPTY 311          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: Q7NDT3_GLOVI (Gll4149 protein n=2 Tax=Gloeobacter violaceus TaxID=33072 RepID=Q7NDT3_GLOVI)

HSP 1 Score: 83.6 bits (205), Expect = 5.400e-19
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GF+NLPLS ++EW  +L   G +LD +K+T+V+CHHGMRS  M   L  + G++ V NV+GG+HAY+ +VD +V  Y
Sbjct:   50 GFINLPLSHYQEWSMRL---GEILDPQKETIVLCHHGMRSADMCSFL-LRRGYENVKNVQGGIHAYSLYVDPNVPRY 122          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: UPI0016805816 (rhodanese-like domain-containing protein n=1 Tax=Leptolyngbya sp. FACHB-36 TaxID=2692808 RepID=UPI0016805816)

HSP 1 Score: 83.2 bits (204), Expect = 5.880e-19
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 GFVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            GF NLPLSQF EW  ++      LD EK+T+V+CHHGMRS QM Q L+T+ GF  V N+EGG+ AYA  VD SV  Y
Sbjct:   41 GFKNLPLSQFAEWSGQIHTR---LDPEKETLVLCHHGMRSAQMCQWLNTQ-GFTNVKNIEGGIDAYAIVVDPSVPRY 113          
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Match: A0A7S3H476_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H476_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.760e-19
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    7 VNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTKAGFKKVWNVEGGLHAYASHVDSSVGVY 231
            ++LPLS    W  K+   G++LD EK T+ +CHHG+RS Q+A  L +KA F  VWNVEGG+ AYA  VD S+G Y
Sbjct:   83 IHLPLSDSNSWSQKVL-TGSLLDPEKPTLCLCHHGVRSMQVASFLVSKAEFDHVWNVEGGIDAYAEQVDPSIGFY 156          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig165.4406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFM0_ECTSI7.830e-4590.91Peptidyl prolyl cis/trans isomerase like n=2 Tax=E... [more]
U5QRK1_9CYAN1.780e-2053.95tRNA s(4)U8 sulfurtransferase n=1 Tax=Gloeobacter ... [more]
A0A4D9D039_9STRA2.150e-2057.69Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
W7TMS8_9STRA4.700e-2058.67Peptidyl-prolyl cis-trans isomerase c n=1 Tax=Nann... [more]
S8D8K8_9LAMI8.280e-2058.44Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A067EI79_CITSI1.170e-1954.55Rhodanese domain-containing protein (Fragment) n=2... [more]
I2CR14_NANGC1.820e-1957.69Peptidyl prolyl cis trans isomerase like protein n... [more]
Q7NDT3_GLOVI5.400e-1949.35Gll4149 protein n=2 Tax=Gloeobacter violaceus TaxI... [more]
UPI00168058165.880e-1957.14rhodanese-like domain-containing protein n=1 Tax=L... [more]
A0A7S3H476_9STRA8.760e-1952.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig165contigL-elsbetiae_contig165:52409..53029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.2
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D8LFM0
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG0476@1,KOG2017@2759
Ec32 ortholog descriptionpeptidyl prolyl cis/trans isomerase like
Ec32 orthologEc-04_001720.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815683.4970214-CDS-L-elsbetiae_contig165:52408..525261622815683.4970214-CDS-L-elsbetiae_contig165:52408..52526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig165 52409..52526 -
1691683035.8558185-CDS-L-elsbetiae_contig165:52408..525261691683035.8558185-CDS-L-elsbetiae_contig165:52408..52526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig165 52409..52526 -
1622815683.5085363-CDS-L-elsbetiae_contig165:52913..530291622815683.5085363-CDS-L-elsbetiae_contig165:52913..53029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig165 52914..53029 -
1691683035.8693779-CDS-L-elsbetiae_contig165:52913..530291691683035.8693779-CDS-L-elsbetiae_contig165:52913..53029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig165 52914..53029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig165.4406.1prot_L-elsbetiae_contig165.4406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig165 52409..53029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig165.4406.1

>prot_L-elsbetiae_contig165.4406.1 ID=prot_L-elsbetiae_contig165.4406.1|Name=mRNA_L-elsbetiae_contig165.4406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
GFVNLPLSQFEEWGSKLSGEGAVLDAEKDTVVMCHHGMRSNQMAQHLSTK
AGFKKVWNVEGGLHAYASHVDSSVGVY*
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mRNA from alignment at L-elsbetiae_contig165:52409..53029-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig165.4406.1 ID=mRNA_L-elsbetiae_contig165.4406.1|Name=mRNA_L-elsbetiae_contig165.4406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig165:52409..53029- (Laminarionema elsbetiae ELsaHSoW15)
GGGTTCGTGAACCTACCACTTTCCCAGTTCGAGGAGTGGGGCAGCAAGCT TTCCGGAGAAGGCGCTGTCTTGGACGCGGAAAAGGACACCGTCGTCATGT GTCACCACGGCATGAGGTATGCGGGCGACGCAAACTCTCTTTTGACCAGC TCCTTGCAGCAGACTCCATTGGAATTCCTCTAATCAAAGACCCCATGCAA CGCCTCCCCCCCTGATACCGCCGCCATCAGCTGCCGGTGCGCTCACCGGC CTCGCTCTTCTCTGCAGCACAAGGAGCGCAAAATACGCCAAATGAGAGTT TACTATTCTCGATCTACTTAGATACATACATATGTGTACAAAGATGTTTG TACTCACGGCTGACCAAGCGCTGCAAGTTAAAACTCCTACAATTGTTATT GGTGCTTTGTTTCCGCCGTGCTCACCCCCGTCTCTGCTCGCGGACGCCCC CGGTCTGCTCCATGCCCCAAACGCTCTCCTGGCTGCCTTCAAATCAAATC CAGATCGAACCAGATGGCCCAGCATTTGTCGACGAAAGCTGGTTTCAAGA AGGTGTGGAACGTAGAGGGCGGTCTACACGCCTACGCGAGCCACGTCGAC TCCTCCGTAGGGGTGTACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig165:52409..53029-

>mRNA_L-elsbetiae_contig165.4406.1 ID=mRNA_L-elsbetiae_contig165.4406.1|Name=mRNA_L-elsbetiae_contig165.4406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig165:52409..53029- (Laminarionema elsbetiae ELsaHSoW15)
GGGTTCGTGAACCTACCACTTTCCCAGTTCGAGGAGTGGGGCAGCAAGCT
TTCCGGAGAAGGCGCTGTCTTGGACGCGGAAAAGGACACCGTCGTCATGT
GTCACCACGGCATGAGGGGTTCGTGAACCTACCACTTTCCCAGTTCGAGG
AGTGGGGCAGCAAGCTTTCCGGAGAAGGCGCTGTCTTGGACGCGGAAAAG
GACACCGTCGTCATGTGTCACCACGGCATGAGATCGAACCAGATGGCCCA
GCATTTGTCGACGAAAGCTGGTTTCAAGAAGGTGTGGAACGTAGAGGGCG
GTCTACACGCCTACGCGAGCCACGTCGACTCCTCCGTAGGGGTGTACTAA
ATCGAACCAGATGGCCCAGCATTTGTCGACGAAAGCTGGTTTCAAGAAGG
TGTGGAACGTAGAGGGCGGTCTACACGCCTACGCGAGCCACGTCGACTCC
TCCGTAGGGGTGTACTAA
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