mRNA_L-elsbetiae_contig1644.4372.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1644.4372.1
Unique NamemRNA_L-elsbetiae_contig1644.4372.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1644.4372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1644contigL-elsbetiae_contig1644:7157..9572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size519
Cds size519
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1644.4372.1prot_L-elsbetiae_contig1644.4372.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1644 7157..9572 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.5201418-CDS-L-elsbetiae_contig1644:7156..71871622815679.5201418-CDS-L-elsbetiae_contig1644:7156..7187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 7157..7187 -
1691683033.1855865-CDS-L-elsbetiae_contig1644:7156..71871691683033.1855865-CDS-L-elsbetiae_contig1644:7156..7187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 7157..7187 -
1622815679.5315402-CDS-L-elsbetiae_contig1644:7491..75441622815679.5315402-CDS-L-elsbetiae_contig1644:7491..7544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 7492..7544 -
1691683033.1946757-CDS-L-elsbetiae_contig1644:7491..75441691683033.1946757-CDS-L-elsbetiae_contig1644:7491..7544Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 7492..7544 -
1622815679.5422769-CDS-L-elsbetiae_contig1644:8429..85261622815679.5422769-CDS-L-elsbetiae_contig1644:8429..8526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 8430..8526 -
1691683033.203133-CDS-L-elsbetiae_contig1644:8429..85261691683033.203133-CDS-L-elsbetiae_contig1644:8429..8526Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 8430..8526 -
1622815679.5531192-CDS-L-elsbetiae_contig1644:8909..90711622815679.5531192-CDS-L-elsbetiae_contig1644:8909..9071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 8910..9071 -
1691683033.2168732-CDS-L-elsbetiae_contig1644:8909..90711691683033.2168732-CDS-L-elsbetiae_contig1644:8909..9071Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 8910..9071 -
1622815679.5679219-CDS-L-elsbetiae_contig1644:9396..95721622815679.5679219-CDS-L-elsbetiae_contig1644:9396..9572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 9397..9572 -
1691683033.2256432-CDS-L-elsbetiae_contig1644:9396..95721691683033.2256432-CDS-L-elsbetiae_contig1644:9396..9572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1644 9397..9572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1644.4372.1

>prot_L-elsbetiae_contig1644.4372.1 ID=prot_L-elsbetiae_contig1644.4372.1|Name=mRNA_L-elsbetiae_contig1644.4372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
PATRQVGLLGAPPSSQATDGTTYRLGSDRPRGLSESMGGAGSARSSRLTS
TPRCQPLMRQWGLPATAAGTGEARTSRERRQGRLPSAGPATGAGDRCVRE
AGGSTGSTTGSSREGGTAAYRSSSPRISTSTTSSGTTITTSKHMQTPHFT
GTVHTLPRRPVFRECSSRRFTGS
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mRNA from alignment at L-elsbetiae_contig1644:7157..9572-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1644.4372.1 ID=mRNA_L-elsbetiae_contig1644.4372.1|Name=mRNA_L-elsbetiae_contig1644.4372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2416bp|location=Sequence derived from alignment at L-elsbetiae_contig1644:7157..9572- (Laminarionema elsbetiae ELsaHSoW15)
CCAGCGACACGGCAGGTGGGGCTGCTGGGAGCGCCCCCGAGCTCACAGGC
GACCGACGGCACAACTTACCGGCTGGGGAGCGATCGACCTCGCGGGCTGT
CGGAATCAATGGGGGGCGCGGGCAGCGCTCGCAGTTCACGTCTCACCAGC
ACACCACGCTGCCAACCCTTGATGCGGTGAGCAACTATGTGGTTGAGAAA
TATGGTTGCCGTTGTTTGTGTGGCTTTGGGGTCTGGTTTGGTTATATCGT
CACCGATGAAAAACAGTGTCAATCTCTGGTGTGCCGCCTCTAACGCTGTA
GACTATGTAGGTGTTTGGTGACGCGTGGGGACGGTGTCACTTGCTCCAGA
CCTCGGTTTTTCATGGATAGTCCGTTGTGCCATAGGTTGAGGGCTCACCT
TTAGCCAGAAACATTCAGCACCAATCAAAGCCGTTTCTCCCTTTCTCTTC
GGGTTGCTGTTTTCTTGTTTTGTTTGTAATGATCTGATTGATCTCTATCA
GACAATGGGGTCTTCCAGCGACGGCGGCAGGCACCGGGGAGGCTCGGACC
AGCCGCGAACGACGGCAGGGTCGGCTACCCAGCGCTGGGCCGGCAACTGG
GGCTGGGGATCGGTGTGTGAGAGAGGCGGGTGGCAGCACGGGCAGCACCA
CTGGCAGCAGCAGGTGATGAATGCGGGAACGGGGGCAAGGTTTTTGGTGC
GAAAAGTGGGTTTACATCGGCCAGGCGATGGTCTCTGTGTGTGTGACGTT
TGGGTTTGCCATTTTTTTTAATCGGTCGGAGAAGGTAAGGGTAGTAGACT
GGGCGCCTCTTTCGCTTTCTTACCGGTCTTTTCTGGTATTTTTGTAGGCG
TGCAGACGTGTAATTGTTCCAAATGAGGCGCTGCGAATAGATTTCGAGTT
GTGATTGGTCTCGGAAAAGAGATTGTTACCACGAGGTCACAAGTTTCGTG
ATTGGTCGTGGTACTTGATTTGTGGTTTAGATTCAGAGTCTATGAGTATC
AGTTGTTCTTATAAAGCTTGTCGTTTCCATGCACCTTCATTTTCAGGGAG
GGCGGTACAGCAGCGTACCGTTCCAGCAGCCCCAGAATCAGCACCAGCAC
CACCAGCAGCGGCACCACTATCACTACCAGCAAGCATATGCAAGTGAGTA
TGCCGATGAGATCAGAGCGGGCGATTCGTACCAGTGACAATGCACTTCGA
AGCACATCGCGTATGACATTATCCCGTCAGGATACTCTGCGTTTTGCTGT
ACGTTCCGTTTGGCAATGTGCCCTGTAACGTGAAACCCGTTGTCGTTTAC
TCTAACATGCACGGGTGGGTATGACGTGCATGCGACGCACGTTTGTTAAG
CTTGCTGGATACAGGGTACGACGTGCTGCGTGGATCCAGAGCGGTTCATT
TCAAACCCATATACCACCACCTCTTTTGTGTCATAATGCTTTTCTCTCTC
TGCCTATCGTTTCGGCTGAAGCTCGACAGATGTAGTTCCCATCAATCAGT
CGTCGTTGCTCCGGCAGTGTACTCGGACCTACATACTCCGTACATTGAAA
CGAAAACGAAGCAAGTTGAGCGCCGGGGTTTTGGGGGTGATTCTCGAAGA
CGCCAGTCATAGTTGTTCTTGTTCATAGGCTGAAGAGTCGGCGTGGTGGC
GATTTTCGCGGCAAGCTTAAAAAACCCGGGTAGCTTGCGGGTTTGAAGAA
TATTGCTCTTTCCCCCACGGCTCTATGAGACTTCCCCTACGGACATGTAG
GACGCAGCACTGCACTTTTCGCCTTCGGATGGGTAACCACACTGGATGTG
ATGGCAAAGTAGAGCACCGGCAAACATTGCTGTATCGCCCTTTTTTATTT
TTCCTCGTGTGGGTGCTTGGCAGCATTTGTAGGAGGAGAAACGTTTCTGT
GTCCGTCCTTGTCTCTCAATTCGTGTAAAGCCCGTAACTGCAACGGGAGT
AGACTATTCGGATAGACGAACACCGAACTCCCATGTTTATCCCCGCTTTT
TCTGCTCTTGCTTGTGTTTGTGTCACAGACACCCCATTTCACGGGAACGG
TGCATACGCTGCCTCGGCGTCCGGTTTTCAGGTCAGTTTTTCTTGGAGCT
CTCCACCCATGCAGTTTTTATTTTGCGATTGCACACGGTCTTAAATGTTG
GCGAGGAGAGAAAGAAAGCTGTCGCCACCAAGTTGAAATCTCGTAAATCT
TTTCCAGAGGAAGATCCTCTCATCAAGGCGTTCCCGCAAGTTTTTCCTCT
GAGAACAAGCCGTGTCGTATATTTTCATCTCTACTTTTCAGTCTCCATAA
AACTGTCGGACCAAAGCGGCACTACATGTAGAGCAATTTTACCAGTCCAG
TTTGTTGCTGCGTGTGCCTTTTTACGTGTTATTAGGGAATGCAGCAGCAG
GCGGTTTACAGGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1644:7157..9572-

>mRNA_L-elsbetiae_contig1644.4372.1 ID=mRNA_L-elsbetiae_contig1644.4372.1|Name=mRNA_L-elsbetiae_contig1644.4372.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig1644:7157..9572- (Laminarionema elsbetiae ELsaHSoW15)
CCAGCGACACGGCAGGTGGGGCTGCTGGGAGCGCCCCCGAGCTCACAGGC
GACCGACGGCACAACTTACCGGCTGGGGAGCGATCGACCTCGCGGGCTGT
CGGAATCAATGGGGGGCGCGGGCAGCGCTCGCAGTTCACGTCTCACCAGC
ACACCACGCTGCCAACCCTTGATGCGCCAGCGACACGGCAGGTGGGGCTG
CTGGGAGCGCCCCCGAGCTCACAGGCGACCGACGGCACAACTTACCGGCT
GGGGAGCGATCGACCTCGCGGGCTGTCGGAATCAATGGGGGGCGCGGGCA
GCGCTCGCAGTTCACGTCTCACCAGCACACCACGCTGCCAACCCTTGATG
CGACAATGGGGTCTTCCAGCGACGGCGGCAGGCACCGGGGAGGCTCGGAC
CAGCCGCGAACGACGGCAGGGTCGGCTACCCAGCGCTGGGCCGGCAACTG
GGGCTGGGGATCGGTGTGTGAGAGAGGCGGGTGGCAGCACGGGCAGCACC
ACTGGCAGCAGCAGACAATGGGGTCTTCCAGCGACGGCGGCAGGCACCGG
GGAGGCTCGGACCAGCCGCGAACGACGGCAGGGTCGGCTACCCAGCGCTG
GGCCGGCAACTGGGGCTGGGGATCGGTGTGTGAGAGAGGCGGGTGGCAGC
ACGGGCAGCACCACTGGCAGCAGCAGGGAGGGCGGTACAGCAGCGTACCG
TTCCAGCAGCCCCAGAATCAGCACCAGCACCACCAGCAGCGGCACCACTA
TCACTACCAGCAAGCATATGCAAGGAGGGCGGTACAGCAGCGTACCGTTC
CAGCAGCCCCAGAATCAGCACCAGCACCACCAGCAGCGGCACCACTATCA
CTACCAGCAAGCATATGCAAACACCCCATTTCACGGGAACGGTGCATACG
CTGCCTCGGCGTCCGGTTTTCAGACACCCCATTTCACGGGAACGGTGCAT
ACGCTGCCTCGGCGTCCGGTTTTCAGGGAATGCAGCAGCAGGCGGTTTAC
AGGCAGCGGAATGCAGCAGCAGGCGGTTTACAGGCAGC
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