mRNA_L-elsbetiae_contig164.4349.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig164.4349.1
Unique NamemRNA_L-elsbetiae_contig164.4349.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig164.4349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig164contigL-elsbetiae_contig164:51765..52248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size486
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.8564372-CDS-L-elsbetiae_contig164:51764..520791622815676.8564372-CDS-L-elsbetiae_contig164:51764..52079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 51765..52079 +
1691683031.425571-CDS-L-elsbetiae_contig164:51764..520791691683031.425571-CDS-L-elsbetiae_contig164:51764..52079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 51765..52079 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.8693738-UTR-L-elsbetiae_contig164:52079..522481622815676.8693738-UTR-L-elsbetiae_contig164:52079..52248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig164 52080..52248 +
1691683031.434177-UTR-L-elsbetiae_contig164:52079..522481691683031.434177-UTR-L-elsbetiae_contig164:52079..52248Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig164 52080..52248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig164.4349.1prot_L-elsbetiae_contig164.4349.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig164 51765..52079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig164.4349.1

>prot_L-elsbetiae_contig164.4349.1 ID=prot_L-elsbetiae_contig164.4349.1|Name=mRNA_L-elsbetiae_contig164.4349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
RLFFILKLLSGLRGTCGSGYHTPTIQRNIVLCGLSHREEGVRQKILKDEK
RTVDVCSKHAHARPRTRHCGTGEHSTGQHTQHNENKTKHGGFSGTAATNP
PPPD*
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mRNA from alignment at L-elsbetiae_contig164:51765..52248+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig164.4349.1 ID=mRNA_L-elsbetiae_contig164.4349.1|Name=mRNA_L-elsbetiae_contig164.4349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=484bp|location=Sequence derived from alignment at L-elsbetiae_contig164:51765..52248+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCTCTTTTTCATTCTCAAACTTCTAAGTGGACTGCGCGGAACTTGTGG
AAGTGGTTATCACACTCCCACAATTCAGCGCAATATCGTTCTCTGCGGCC
TATCCCACAGAGAGGAAGGAGTGCGACAAAAAATCCTCAAGGACGAAAAG
AGAACCGTCGACGTATGTAGCAAACACGCCCACGCGCGCCCACGAACGAG
ACACTGCGGCACGGGGGAACACAGCACAGGGCAGCATACTCAACACAACG
AAAATAAAACAAAGCATGGGGGGTTCAGCGGAACTGCCGCAACGAACCCC
CCCCCCCCAGATTAAAAATGTTTGACCGGTTCTCCCGCATTTTGGATGTC
GCAATCTTTTGCGGCAAGGCACGTCTCGCCTCGCAGGAACGGCAAGAAGT
ATGCCAGCACACAACTCTTCGCGAAGCCGGTCACTCCCCTCGCTTTTCTG
TCGTGTACGGATATCTCAAGCGCACCGCTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig164:51765..52248+

>mRNA_L-elsbetiae_contig164.4349.1 ID=mRNA_L-elsbetiae_contig164.4349.1|Name=mRNA_L-elsbetiae_contig164.4349.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig164:51765..52248+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCTCTTTTTCATTCTCAAACTTCTAAGTGGACTGCGCGGAACTTGTGG
AAGTGGTTATCACACTCCCACAATTCAGCGCAATATCGTTCTCTGCGGCC
TATCCCACAGAGAGGAAGGAGTGCGACAAAAAATCCTCAAGGACGAAAAG
AGAACCGTCGACGTATGTAGCAAACACGCCCACGCGCGCCCACGAACGAG
ACACTGCGGCACGGGGGAACACAGCACAGGGCAGCATACTCAACACAACG
AAAATAAAACAAAGCATGGGGGGTTCAGCGGAACTGCCGCAACGAACCCC
CCCCCCCCAGATTAACGCCTCTTTTTCATTCTCAAACTTCTAAGTGGACT
GCGCGGAACTTGTGGAAGTGGTTATCACACTCCCACAATTCAGCGCAATA
TCGTTCTCTGCGGCCTATCCCACAGAGAGGAAGGAGTGCGACAAAAAATC
CTCAAGGACGAAAAGAGAACCGTCGACGTATGTAGCAAACACGCCCACGC
GCGCCCACGAACGAGACACTGCGGCACGGGGGAACACAGCACAGGGCAGC
ATACTCAACACAACGAAAATAAAACAAAGCATGGGGGGTTCAGCGGAACT
GCCGCAACGAACCCCCCCCCCCCAGATTAA
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