mRNA_L-elsbetiae_contig164.4348.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig164.4348.1
Unique NamemRNA_L-elsbetiae_contig164.4348.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A7S3B5K1_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B5K1_9EUKA)

HSP 1 Score: 68.6 bits (166), Expect = 1.590e-11
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPWV 250
            D   ADMW+LG+ L+S ++G  P++ A   R K +   +R+G     P+  SP + SLL  +L  DP++R T AE L C W+
Sbjct:  213 DAACADMWSLGIILFSMLSGTLPFQCAAASRCKRYAAVLRQGIQVMCPEHLSPSVTSLLGRMLDPDPKRRFTPAEALQCEWL 294          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A5F9CKW4_RABIT (Protein kinase domain-containing protein n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9CKW4_RABIT)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-10
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPW 247
            DPF AD+W+LGV L++ MAG  P+     E  +E  + +R G  + LP   SP L  LL+ LLSLDP++RP+A +    PW
Sbjct:  191 DPFPADVWSLGVILFTMMAGAVPFS---GEDEEELEQNIRRGY-HELPCPASPALEELLSSLLSLDPRERPSAEQAKHHPW 267          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: UPI0001CE0DB8 (serine/threonine-protein kinase MARK2-like n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0001CE0DB8)

HSP 1 Score: 66.2 bits (160), Expect = 1.060e-10
Identity = 36/81 (44.44%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPW 247
            DPF AD+W+LGV L++ MAG  P+     E  +E  + +R G  + LP   SP L  LL+ LLSLDP++RP+A +    PW
Sbjct:  191 DPFPADVWSLGVILFTMMAGAVPFS---GEDEEELEQNIRRGY-HELPCPASPALEELLSSLLSLDPRERPSAEQAKHHPW 267          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A5F9CCY6_RABIT (Protein kinase domain-containing protein n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9CCY6_RABIT)

HSP 1 Score: 65.5 bits (158), Expect = 1.930e-10
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPW 247
            DPF AD+W+LGV L++ MAG  P+     E   E  + +R G    LP   SP L  LL+ LLSLDP++RP+A E    PW
Sbjct:  191 DPFPADVWSLGVILFTMMAGAVPFS---GEDEAELTQNIRRGYYE-LPCPASPALEELLSSLLSLDPRERPSAEEAKHHPW 267          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A7S2D0D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0D7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.400e-10
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGA-----ANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPWVSA 256
            DP SAD+W+LGVTL++ +AG HPW+ A  +    FR   R  +     ++  P   S  LR LL  +L+ D ++R    E+ + PWV A
Sbjct:    7 DPASADVWSLGVTLFTMVAGHHPWDEA-TDNDSSFRRLKRGASVFRTYSSIFPPHLSLPLRDLLQSMLAFDKEERVGMEEIASHPWVLA 94          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A7S3S995_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S995_EMIHU)

HSP 1 Score: 63.9 bits (154), Expect = 6.690e-10
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 2
Query:   14 SADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPWV 250
            SADMW+LG+ L+S ++G  P+E A   R K +   +++G     P+  S  + +LL+ LL  DP QR T  + LAC W+
Sbjct:  203 SADMWSLGIVLFSMLSGTLPFECAAASRCKRYAAVLQQGIQVMCPEHLSQQVSTLLSRLLHPDPLQRFTPEQALACEWL 281          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A8D2CLJ2_SCIVU (Protein kinase domain-containing protein n=1 Tax=Sciurus vulgaris TaxID=55149 RepID=A0A8D2CLJ2_SCIVU)

HSP 1 Score: 63.5 bits (153), Expect = 6.950e-10
Identity = 33/79 (41.77%), Postives = 49/79 (62.03%), Query Frame = 2
Query:   17 ADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPWVS 253
            AD+W+LG+TL+  + G  P+       SKE    V + A+  +P   SPG RSL+  LL++DP+QRPT  +V+  PW+S
Sbjct:  200 ADVWSLGITLYFMLTGRRPF---MASTSKELLNLVMQ-ASYDIPPHVSPGARSLIQQLLTVDPRQRPTLEQVMGHPWLS 274          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A7S3X9E0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3X9E0_9SPIT)

HSP 1 Score: 62.0 bits (149), Expect = 3.150e-9
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPWV 250
            D   ADMW+LG+ L+S ++G  P+E A   R K +   +++G     P+  S  +  LL+ LL  DP+QR T  + L C WV
Sbjct:  137 DASCADMWSLGIILFSMLSGTLPFECAAASRCKRYAAVLQQGIQVMCPEHLSEHVSLLLSRLLHPDPRQRFTPEQALNCDWV 218          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: UPI0004908C8F (serine/threonine-protein kinase MARK2-like n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=UPI0004908C8F)

HSP 1 Score: 60.8 bits (146), Expect = 8.070e-9
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPW 247
            DPF+AD+W+LGV L++ +AG  P+     E   E R+ ++ G+   LP + SP L  LL+ LLS+DP  RPTA E+    W
Sbjct:  209 DPFAADIWSLGVILFTMLAGAMPFN---GEDRVELRDCIQRGSYE-LPCAASPALEELLSWLLSMDPYDRPTA-EIARQQW 284          
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Match: A0A7S0QAV9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QAV9_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 1.210e-8
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 2
Query:    5 DPFSADMWALGVTLWSAMAGCHPWELACVERSKEFREFVREGAANTLPKSFSPGLRSLLAGLLSLDPQQRPTAAEVLACPWV 250
            D   ADMW+LG+ L+S ++G  P+E A   R K +   +R+G     P+  S  + SLLA LL  +P QR T  + L   W+
Sbjct:  214 DAARADMWSLGIILFSMLSGTLPFECAAASRCKRYAAVLRQGIQVMCPEHLSSQVTSLLARLLHPEPSQRFTPQQALDSDWL 295          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig164.4348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3B5K1_9EUKA1.590e-1139.02Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A5F9CKW4_RABIT1.010e-1044.44Protein kinase domain-containing protein n=1 Tax=O... [more]
UPI0001CE0DB81.060e-1044.44serine/threonine-protein kinase MARK2-like n=1 Tax... [more]
A0A5F9CCY6_RABIT1.930e-1045.68Protein kinase domain-containing protein n=1 Tax=O... [more]
A0A7S2D0D7_9STRA4.400e-1038.20Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3S995_EMIHU6.690e-1039.24Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A8D2CLJ2_SCIVU6.950e-1041.77Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A7S3X9E0_9SPIT3.150e-937.80Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
UPI0004908C8F8.070e-943.21serine/threonine-protein kinase MARK2-like n=1 Tax... [more]
A0A7S0QAV9_9EUKA1.210e-837.80Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig164contigL-elsbetiae_contig164:43959..45276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.7530675-CDS-L-elsbetiae_contig164:43958..441221622815676.7530675-CDS-L-elsbetiae_contig164:43958..44122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 43959..44122 +
1691683031.375675-CDS-L-elsbetiae_contig164:43958..441221691683031.375675-CDS-L-elsbetiae_contig164:43958..44122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 43959..44122 +
1622815676.7628798-CDS-L-elsbetiae_contig164:45167..452761622815676.7628798-CDS-L-elsbetiae_contig164:45167..45276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 45168..45276 +
1691683031.3867376-CDS-L-elsbetiae_contig164:45167..452761691683031.3867376-CDS-L-elsbetiae_contig164:45167..45276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig164 45168..45276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig164.4348.1prot_L-elsbetiae_contig164.4348.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig164 43959..45276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig164.4348.1

>prot_L-elsbetiae_contig164.4348.1 ID=prot_L-elsbetiae_contig164.4348.1|Name=mRNA_L-elsbetiae_contig164.4348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=91bp
ERSIFGRHVGTRGHTLVCDGWVSSVGASVRGTIQGVQGVRERGSSQHAAQ
ELLPRSKVVACRVALPGPSATPDRRRSPCLPLGVRTADHAT
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mRNA from alignment at L-elsbetiae_contig164:43959..45276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig164.4348.1 ID=mRNA_L-elsbetiae_contig164.4348.1|Name=mRNA_L-elsbetiae_contig164.4348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1318bp|location=Sequence derived from alignment at L-elsbetiae_contig164:43959..45276+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAGATCCATTTTCGGCCGACATGTGGGCACTCGGGGTCACACTTTGGT CTGCGATGGCTGGGTGTCATCCGTGGGAGCTAGCGTGCGTGGAACGATCC AAGGAGTTCAGGGAGTTCGTGAGAGAGGGAGCAGCCAACACGCTGCCCAA GAGCTTCTCCCCAGGTACGAGAGAGGCGGCAGCGCGGCAGCCGAAAGGGG AGACATAGACATGCCGCGTTCATGAGATGTTTTTTGCTGATGCGGGTCAC AAGAAGATTATCCGCTGGAGATCAATCAATCTACAAATAATTTCGGATTT TCATTCGTCTTTTTTGTTGGTTTTTTGGCGGTAAGGGGGTGGGGGTACAG AACGGGGGAGTGCGCTGAGAGACAGGGAGGTGATATGTAAGCGTGAGGTA CTTCTCTGTACTCGGGTGATGGGAGAACAGCAACATTGCGTACATGGTCG CGACGCGAGATGCTTTTCTGCAAATATTTTCTCTCTCCGCACCTCTCTCT CAAACAAAAAAAACTTGTTGTGTTCTTGATTTGAGTTGCTGCATCTAGCA TCTACCTGCGCCTGCCCCGCCACTGCAACCAAAACGAGCGCGAGTGAGAT TAGTTTCCACATCGAGGGAGCGCACGCGAAGAGACCGACGAAATCAAGTT GATTGTACAATCTCTTCTAATATTTATTTAAAAGTATCGACCTACTATCT AGACTAGATAGACTTTAATTGGTATAGTATATTTCTCTCCGGCAAGAACG ACGACCCGGTACTTGTAGTGTTTGTCTACAGTGGTTACTCCAGGAAACAC GGCCACGTGGATCTTACAATAGAACATCTGAACCAGCGCGAATTACGCCG CCTGTAGTAGAAAAAGGAAGCCGAACAGGAGGGGGCCGAAAAAGTGTACC GGACACTTGTTGTTTGCTGTGTTTGCCTCTCTACGCAAACGTACAGCAGT GCAGAGTATTTGGTTGGACTTTCCCACTGCAACTACACTACAATTCATGC ATACATAGACGCCCGCGGCGAAATATTGATCCTGGGTTTGGGCAAGTTGG CTTAGGAGATGATATTTAATTTTGTTATTGTACGCACGATAGCACAAAGA GTACATGGGGATTTTTAATTTCATCACGCGAGAAAACTCGGCTTCCTACA TCCTTGACGCTTGCCCCTTCTCCCGTCTTCCTGACCTACCGCTACCCCAT CCAACTCAGGTCTAAGGTCGTTGCTTGCAGGGTTGCTCTCCCTGGACCCT CAGCAACGCCCGACCGCCGCCGAAGTCCTTGCCTGCCCCTGGGTGTCCGC ACCGCCGACCACGCCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig164:43959..45276+

>mRNA_L-elsbetiae_contig164.4348.1 ID=mRNA_L-elsbetiae_contig164.4348.1|Name=mRNA_L-elsbetiae_contig164.4348.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig164:43959..45276+ (Laminarionema elsbetiae ELsaHSoW15)
GAGAGATCCATTTTCGGCCGACATGTGGGCACTCGGGGTCACACTTTGGT
CTGCGATGGCTGGGTGTCATCCGTGGGAGCTAGCGTGCGTGGAACGATCC
AAGGAGTTCAGGGAGTTCGTGAGAGAGGGAGCAGCCAACACGCTGCCCAA
GAGCTTCTCCCCAGGAGAGATCCATTTTCGGCCGACATGTGGGCACTCGG
GGTCACACTTTGGTCTGCGATGGCTGGGTGTCATCCGTGGGAGCTAGCGT
GCGTGGAACGATCCAAGGAGTTCAGGGAGTTCGTGAGAGAGGGAGCAGCC
AACACGCTGCCCAAGAGCTTCTCCCCAGGTCTAAGGTCGTTGCTTGCAGG
GTTGCTCTCCCTGGACCCTCAGCAACGCCCGACCGCCGCCGAAGTCCTTG
CCTGCCCCTGGGTGTCCGCACCGCCGACCACGCCACCGTCTAAGGTCGTT
GCTTGCAGGGTTGCTCTCCCTGGACCCTCAGCAACGCCCGACCGCCGCCG
AAGTCCTTGCCTGCCCCTGGGTGTCCGCACCGCCGACCACGCCACC
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