mRNA_L-elsbetiae_contig16361.4330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16361.4330.1
Unique NamemRNA_L-elsbetiae_contig16361.4330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16361.4330.1 vs. uniprot
Match: D7FX52_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX52_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-18
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   13 SPLLSPYLGGALLWCLTRWASAYLLPDLSLYEGGRFSFRLTQAFGSS 153
            SPLLSPYLGGALLWCLTRWAS YL  DLSLYEGG FS+RLTQAFGSS
Sbjct:  634 SPLLSPYLGGALLWCLTRWASGYLFADLSLYEGG-FSYRLTQAFGSS 679
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BLAST of mRNA_L-elsbetiae_contig16361.4330.1 vs. uniprot
Match: A0A6H5K5P3_9PHAE (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.740e-11
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    4 SSPSPLLSPYLGGALLWCLTRWASAYLLPDLSLYE 108
            SS SPLLSPYLGGALLWCLTRWAS YL  DLSLYE
Sbjct:  629 SSWSPLLSPYLGGALLWCLTRWASGYLFADLSLYE 663
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16361.4330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FX52_ECTSI1.600e-1889.36Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5K5P3_9PHAE1.740e-1188.57Importin N-terminal domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16361contigL-elsbetiae_contig16361:1907..3508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue7.6e-15
Seed eggNOG ortholog2880.D7FX52
KEGG koko:K18460
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG1410@1,KOG1410@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.8215582-CDS-L-elsbetiae_contig16361:1906..20141622815675.8215582-CDS-L-elsbetiae_contig16361:1906..2014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16361 1907..2014 +
1691683030.8689113-CDS-L-elsbetiae_contig16361:1906..20141691683030.8689113-CDS-L-elsbetiae_contig16361:1906..2014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16361 1907..2014 +
1622815675.8428597-CDS-L-elsbetiae_contig16361:3364..35081622815675.8428597-CDS-L-elsbetiae_contig16361:3364..3508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16361 3365..3508 +
1691683030.8809154-CDS-L-elsbetiae_contig16361:3364..35081691683030.8809154-CDS-L-elsbetiae_contig16361:3364..3508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16361 3365..3508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16361.4330.1prot_L-elsbetiae_contig16361.4330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16361 1907..3508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16361.4330.1

>prot_L-elsbetiae_contig16361.4330.1 ID=prot_L-elsbetiae_contig16361.4330.1|Name=mRNA_L-elsbetiae_contig16361.4330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
YSSPSPLLSPYLGGALLWCLTRWASAYLLPDLSLYEGGRFSFRLTQAFGS
SSSSSSSSSSSSSLPSQVTLSDPPGGGVVAQATA
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mRNA from alignment at L-elsbetiae_contig16361:1907..3508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16361.4330.1 ID=mRNA_L-elsbetiae_contig16361.4330.1|Name=mRNA_L-elsbetiae_contig16361.4330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1602bp|location=Sequence derived from alignment at L-elsbetiae_contig16361:1907..3508+ (Laminarionema elsbetiae ELsaHSoW15)
TACTCCTCGCCAAGCCCGCTGCTGAGCCCCTACCTCGGCGGCGCGCTGCT
CTGGTGCCTCACGAGGTGGGCGAGCGCCTACTTGCTGCCGGACCTGAGCC
TGTACGAGGTGGGGGCACGGTGGGATTGGGTGGGGAGGGGGGGGGGGCAG
GGGGGAGGGGGGTTAGGTGGCTCTGCCCGCGCAGGACTTTTGCGTGTTGT
GTCTCCGTCCGTTCGCAGCCGCCCGCCGCCTCTCACTCTGGTTTTCCACC
GTGTTTAGTTAGTTTTCACCGGCGCTTTGCACAGCTCAAGGCGGTTCCGT
CGGTTCTCTGCTGCTTGTTTATCATGAGCCTCGTGCCTGTTTTCGGGGGA
AGGTTTTTGCTGGCCTGCCGATAGACGATTTACAATCTGGCCATCCATTG
GTTTGCGTACCATTTGTAGTGCTTTCGGGCGCTCTTCTTGTGGATTCGTT
GCGGCGGCTGCTGTGCTCCCGCCGTCCTCTGTGAGCGGGTCGAGAGGGGA
AGGGCGGTGGAGTTGAGCCTGTTGTTGTCTGCCCCCGCGTTCGGCGATTG
GACGGTGTTAACACCCGCACTTCTCTCTCTGAGATATAATAGACATGTCG
AGACGCAAGCAAGAAGGACCCGGCGCCGCAGCGTTGGACGTGTTTGCCGC
GCGGGGCCGTTCCCGCCCCCCGAGAAGGGTGGTCTTCATGCTGGGTGTTC
TCACGGTAATATATATACTGCTAAATAGTAACCGTGATCATGCGAAGGTT
CGCACCCCCGTGTTAGTGTTTTTCTATAGCGTATTTTTCCACAACCAGGA
GGGTACCACTGCCGAAAAAGGGTGGTTTTCGAAACCTCCTGGTTGTGGAG
AAATACGCTTTAGAAAAATGCCAACACGGGGGCGCGAACCTTCGCATGAT
TACGGTATGTTTTCTTACTGTGTGCAAATGCCAGCAGTCTAGTTACGTAC
GTCCAGTCTGCGAAAAAATCGTTCCAGGGGGGCCGACTGTTGTAGGCACA
CTACCCTTCCCTTTTCCATCATCCCAGCTATATTTACTACTTCGAAGTAA
TTCGTGTTTTCATCATGTTTTAACAGCAGTTCACGCTATAAATTTCACAT
CCATGTAGACTAGTCTTTATGTTATGTATGTATGTATGTATGTATGTATG
CACGCCTTCGGAACCTCGAGCCTGTCCAATAAGCTTGGGAATGGTCTTCA
CAAGATTTTACATGTACACAATCGCCGGCGTTCTGCCCCCCCCCCCCCCC
CCCCCCGGCCGCCCACCGCACCGCCGTCCTCCAGCCCTAACCCCTCTCTC
CCTCGCTCGCCGATCGTCCCCGCCCTCCGTTCCCCTCCTCCTCCTCCTCC
TCCTGCTCCTCCTTCTCCGCTTCCCCGGCTGTCCGGCCACCTCGGCGACT
ACACGTGATGCTTCCTTCGCGGCGAACACAACAACGAAACCGACGACACA
CAAAGCAGGGAGGAAGGTTCAGCTTCCGCCTGACCCAGGCCTTTGGTTCC
TCCTCGTCATCATCATCATCATCCTCATCATCATCATCGTTGCCGTCACA
GGTGACCCTTTCGGACCCGCCCGGAGGGGGTGTCGTCGCTCAGGCTACGG
CC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16361:1907..3508+

>mRNA_L-elsbetiae_contig16361.4330.1 ID=mRNA_L-elsbetiae_contig16361.4330.1|Name=mRNA_L-elsbetiae_contig16361.4330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig16361:1907..3508+ (Laminarionema elsbetiae ELsaHSoW15)
TACTCCTCGCCAAGCCCGCTGCTGAGCCCCTACCTCGGCGGCGCGCTGCT
CTGGTGCCTCACGAGGTGGGCGAGCGCCTACTTGCTGCCGGACCTGAGCC
TGTACGAGTACTCCTCGCCAAGCCCGCTGCTGAGCCCCTACCTCGGCGGC
GCGCTGCTCTGGTGCCTCACGAGGTGGGCGAGCGCCTACTTGCTGCCGGA
CCTGAGCCTGTACGAGGGAGGAAGGTTCAGCTTCCGCCTGACCCAGGCCT
TTGGTTCCTCCTCGTCATCATCATCATCATCCTCATCATCATCATCGTTG
CCGTCACAGGTGACCCTTTCGGACCCGCCCGGAGGGGGTGTCGTCGCTCA
GGCTACGGCCGGAGGAAGGTTCAGCTTCCGCCTGACCCAGGCCTTTGGTT
CCTCCTCGTCATCATCATCATCATCCTCATCATCATCATCGTTGCCGTCA
CAGGTGACCCTTTCGGACCCGCCCGGAGGGGGTGTCGTCGCTCAGGCTAC
GGCC
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