mRNA_L-elsbetiae_contig1635.4324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A6H5K8R2_9PHAE (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R2_9PHAE) HSP 1 Score: 404 bits (1037), Expect = 6.100e-125 Identity = 330/707 (46.68%), Postives = 372/707 (52.62%), Query Frame = 1 Query: 235 FDAANSLNVAGVLDILSREELVLPVAPGWASKGQCHHETHQPATGLDVRGHPQLGCRSRLFGMPLADRHAVLTAACSLRHKLPRRALVNFVCRLVLGKDAGHLP---SPQADDEYGCPLMNEAP----RRQGG-EGFCACGRRA------------ILARDVGTRPRGHVTSSGSAAAGTS--------------------TACRSCLARRAWLDSVSARLLVMACRKLLWDRTLPEDEARAVDRCLSALSDALGEVAEVQ-SKSSRGPEAPPSDGAS------LPARAVAVE--RV-GVSAVRAGVRRRRSQAAGAGGYFAVDHNRNHSPGVGGGGGVDCGGALAVDSETWFMGGAEGNGGLLATTPPR-PKKKAARGARDGSPSSARGEPDRRNAPTRVEGRAFSSADDTGSGPGQALGTEHPETAAAVASTAKAADILGGEGKEAPSSSDGLTEG---------------------GERETKDADCLPPAIRQMVGSVAEKVAAAGARGATSTDIQSAAAATISLLQAAMKLPSNHAL-----------SASNTRPGGAAPKRSPAQQXXXXXXPLEAVCRGLGLDVARGXXXXXXXXXXXXXXXXXXXGCGDDLVMAVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDP-SAVGSAQCELCTRLIKQV 2103 F +ANSLNVA VL LS+EELVLPVA ++ + H H+ LD PQL CRSRLFGMPLADRHA LT ACSLRHKLPRRALVNF CRL+LGKD G LP S +A D G P + P RRQGG G CACG + I T R V+ AA + T CRSCL RRAWLD SARLLV+AC KLLW + LPEDEA A+DRCL ALS+ LG+ + + S+S R E + G S LP A AV RV G+SAVRAGVRRRR G + E G A G + A PR P RG+++ T V G F+ A T P AL + E AA+ A A G +D +CLP +RQ V SVAEKVAAAGARGA STD+Q AAAA +SLL+ A KLPSN A S+S+T P P R QQ PLEAVC G+GLD+ RG GCGDDLVMAVC GFVTPALSLRNCLAFVRAVLVPRA+ALT PASRLLVTAVS IGK+RPGVVIDGLVLPLLC GDP SAVGSAQCELCTRLIKQV Sbjct: 51 FVSANSLNVAEVLHALSQEELVLPVARSGSASCRRHQTPHR--ANLDSAELPQLACRSRLFGMPLADRHAALTVACSLRHKLPRRALVNFCCRLILGKDIGRLPPGSSSEAHDGSGDPPTEQIPPGACRRQGGGRGLCACGGQLFASGGKTRASPEIEGGSAETHTRHFVSPDDVAAVRGAXXXXXXXXXXXXXXXXXXXXTTCRSCLGRRAWLDLGSARLLVVACHKLLWGKALPEDEALALDRCLRALSEVLGDRDQSRRSRSKREAEELLAGGGSSGSCGVLPVSAAAVPEGRVRGISAVRAGVRRRRI------GSMTTNSXXXXXXXX----------XXXXXMERRSAGDA---GSVSAGWVPRLPASPTTRGSKNS---------------TGVRGVGFARA--TEIEPSSAL-ADRSERAASGAGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGNNTARDEECLPSVLRQRVASVAEKVAAAGARGAASTDVQGAAAAAVSLLREATKLPSNTAPTSPPTTLAVDGSSSSTGPFYDRP-RPQLQQ------PLEAVCSGVGLDIPRGKGATATA------------GCGDDLVMAVCDGFVTPALSLRNCLAFVRAVLVPRARALTAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQV 699
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: D7FQ65_ECTSI (FA_FANCE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ65_ECTSI) HSP 1 Score: 349 bits (896), Expect = 1.530e-110 Identity = 187/238 (78.57%), Postives = 206/238 (86.55%), Query Frame = 1 Query: 1843 MAVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDP-SAVGSAQCELCTRLIKQVLPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGG--GDSSDRKSDQQREAL---SRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQKSLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRME 2538 MA+C GFVTPALSLRNCLAFVRAVLVPRA+AL PASRLLVTAVS IGK+RPGVVIDGLVLPLLC GDP SAVGSAQCELCTRLIKQ+LPK TLEA+LVGLCG D + Q A GW EGP GG G+ ++ + ++ +A SRCVWT+LT+PVMT ALN KPALSDRAIAALVRG+EAAAE+ LQKSLKFTTL+HSLVTRYGPQLKPHVPVLR AVGRCSTFMVKAVLAALQR+E Sbjct: 1 MAICDGFVTPALSLRNCLAFVRAVLVPRARALNAPASRLLVTAVSGIGKARPGVVIDGLVLPLLCGGDPASAVGSAQCELCTRLIKQILPKDTLEAVLVGLCGPAEDESAQTAGGWIEGPSGGSGGNGTNAAAGRRHDAAGSSSRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRLE 238
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A6H5KA87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA87_9PHAE) HSP 1 Score: 208 bits (529), Expect = 8.870e-59 Identity = 109/156 (69.87%), Postives = 124/156 (79.49%), Query Frame = 1 Query: 2089 LIKQVLPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALS-----RCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQKSLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRMEK 2541 L+ ++LPK TLEA+LVGLCG D + Q A GW GP GGG+ + + R + RCVWT+LT+PVMT ALN KPALSDRAIAALVRG+EAAAE+ LQKSLKFTTL+HSLVTRYGPQLKPHVPVLR AVGRCSTFMVKAVLAALQR+EK Sbjct: 9 LVWRILPKDTLEAVLVGLCGPTEDESAQTAGGWIGGPSGGGNGTGTNAAAGRRLYAAGSSLRCVWTELTVPVMTTALNLKPALSDRAIAALVRGVEAAAERAALQKSLKFTTLIHSLVTRYGPQLKPHVPVLRTAVGRCSTFMVKAVLAALQRLEK 164
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A836CB37_9STRA (FA_FANCE domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB37_9STRA) HSP 1 Score: 151 bits (382), Expect = 6.180e-38 Identity = 100/255 (39.22%), Postives = 126/255 (49.41%), Query Frame = 1 Query: 1846 AVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLL----CEGDPSAV--------------------GSAQCELCTRLIKQVLPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQKSLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRME 2538 AVC VTPAL LR C FVR L+PRA AL+ PA R LV+ V+ K RP V++GL++PLL GD SA GSAQCEL R + LP H L+ C RC W D T+ ++T+ L K L D A+AAL IEA AE+ + KSLKF TL+H+LV +YGPQ PH VLR A + +TFM K+ L+ALQR++ Sbjct: 1 AVCTKAVTPALGLRACTEFVRGALLPRAAALSAPAPRTLVSGVTAAAKQRPQAVVEGLLVPLLHGDAAAGDGSAXXXXXXXXXXXXXXSGGRMAPGSAQCELLLRTARSALPPHAAAPLVAAACDP-----------------------------------RCAWNDGTVALVTSLLGMKLVLDDSAVAALAGRIEAEAERAEQCKSLKFATLLHTLVLKYGPQAGPHAAVLRTAAEKNTTFMKKSALSALQRLK 220
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A7S2SSX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSX3_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.450e-28 Identity = 85/240 (35.42%), Postives = 125/240 (52.08%), Query Frame = 1 Query: 1828 GDDLVMAVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDPSAVGSAQCELCTRLIKQVLPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNS--KPALSDRAIAALVRGIEAAAEQPKLQKSLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRMEK 2541 GD ++M + F P++ C AF++ V++ +A L PA+R+ V+ +S++ K+RP + + +L LLC VGSAQCEL TR+IK LP LE LL GLC P G S CVW+D+TMP++T L + K ++S A +V +E + P L+ SLK LVH++++R+G K H LRA V + +FM K+ L AL R K Sbjct: 364 GDGVLMLLAQNFTQPSIGQHACSAFLQHVMLAKALDLKKPATRVFVSTLSQMAKARPEIFVQNFLLGLLCR-PAEQVGSAQCELGTRMIKLGLPVACLEQLLCGLC---------------RPPQAGSRS--------------CVWSDVTMPLVTGLLAALAKHSISSDTAAVVVDRLEMVVDTPALRSSLKLANLVHTMISRHGKHAKEHERALRAVVSKLDSFMAKSTLLALDRAVK 573
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A7R9Z4A9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4A9_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 2.350e-15 Identity = 73/247 (29.55%), Postives = 119/247 (48.18%), Query Frame = 1 Query: 1834 DLVMAVCGGFVTPALSLRNCLAFVRAVLVPRAQAL--TTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDPSAVGS-------AQCELCTRLIKQVLPKHTLEALLVGL-CGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQKSLKFTTLVHSLVTRYGPQLKPHVPV--LRAAVGRCSTFMVKAVLAALQRME 2538 +L+ ++ + +S A++R+ ++P L + PASR L++ S + + RP + L++P LC GS A C+L R++K K + LL GL CG D G GG S K VWTD ++P+MT+ +N + L D I+ L R ++ P ++KS+KF+TL H+LVT+YG QL+ V L + TFM K + + L++++ Sbjct: 239 ELITSLSKKCINQGISAIRATAYLRSFVLPLLSNLNGSKPASRTLISTTSWLARERPSETVKALLIPSLCVPIDVRKGSSNGGPNKALCDLVGRVVKGAKEKEPIAELLTGLVCG----------DPAGVKIISGGSCSSDKM----------VWTDESIPIMTSCINKRATLPDATISELSRQVQLLV--PNMRKSMKFSTLFHALVTKYGNQLRKLSMVGDLTQSAEMLETFMGKTITSVLRKLK 463
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: D0MYT1_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MYT1_PHYIT) HSP 1 Score: 85.1 bits (209), Expect = 2.890e-14 Identity = 64/225 (28.44%), Postives = 106/225 (47.11%), Query Frame = 1 Query: 1879 SLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDPSAVGSAQCELCTRLIKQV--LPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQK---SLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRME 2538 S R F+ ++P+ +A + SR+L+ R G S G ++D L+LPLL G+ AVG Q E TR+++ + +P L+ L+ V N++ PH + + + V LN+KP LS I LV EA E+P+ ++ SLKF T++ +L+++Y Q HV L A + ++ M K L +LQ+++ Sbjct: 91 SSRYAAIFLETSVLPKIRAADSVISRVLLQTALRFGSSYAGTLVDSLLLPLLVGGECDAVGPPQAEAITRILRSLDTVPADQLDGFLLKSLEAVTANDNLH-------PH-------------------LLSNESALLVFQNVLNTKPVLSVLTIERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCSGHVETLEAIATQLTSIMAKTTLRSLQKLK 289
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A833WJN1_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WJN1_PHYIN) HSP 1 Score: 85.1 bits (209), Expect = 2.060e-13 Identity = 66/241 (27.39%), Postives = 113/241 (46.89%), Query Frame = 1 Query: 1831 DDLVMAVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDPSAVGSAQCELCTRLIKQV--LPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQK---SLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRME 2538 D+ ++ + P LS + F+ ++P+ +A + SR+L+ R G S G ++D L+LPLL G+ AVG Q E TR+++ + +P L+ L+ V N++ PH + + + V LN+KP LS I LV EA E+P+ ++ SLKF T++ +L+++Y Q HV L A + ++ M K L +LQ+++ Sbjct: 288 DEALLQITRNVSIPMLSALSI--FLETSVLPKIRAADSVISRVLLQTALRFGSSYAGTLVDSLLLPLLVGGECDAVGPPQAEAITRILRSLDTVPADQLDGFLLKSLEAVTANDNLH-------PH-------------------LLSNESALLVFQNVLNTKPVLSVLTIERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCSGHVETLEAIATQLTSIMAKTTLRSLQKLK 500
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A662XSE2_9STRA (FA_FANCE domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSE2_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.860e-12 Identity = 64/245 (26.12%), Postives = 106/245 (43.27%), Query Frame = 1 Query: 1831 DDLVMAVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEGDP----SAVGSAQCELCTRLIKQ--VLPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPK---LQKSLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRME 2538 D+ + + V S R F+ L+P+ + T+ SR+L+ R G G ++D L+LPLL G S VG AQ E +R+++ +P L+ + N++ D R LS + + V LN+KP LS + V E A E+P+ L SLKF T++ +L+++Y Q H+ VL + ++ M K L +LQ+++ Sbjct: 67 DEALFQITSALVDANWSSRYAAIFIETSLLPKIRGATSVISRVLLQTALRFGSRYAGTLVDSLLLPLLVHGGDANIDSVVGPAQAEAISRVLRSPNTVPVDQLDGFIQRSLVLAASNSEDGTD-------------------DRHLLSN----ESALLVYQNILNTKPTLSPATVERFVSACEIALERPEGGQLCSSLKFATVIFTLISKYPQQCVGHLEVLETIATKLTSLMAKTTLRSLQKLK 288
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Match: A0A329T1M1_9STRA (FA_FANCE domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1M1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.440e-11 Identity = 67/245 (27.35%), Postives = 110/245 (44.90%), Query Frame = 1 Query: 1831 DDLVMAVCGGFVTPALSLRNCLAFVRAVLVPRAQALTTPASRLLVTAVSRIGKSRPGVVIDGLVLPLLCEG---DPS-AVGSAQCELCTRLIKQ--VLPKHTLEALLVGLCGTVIDNNDQAADGWGEGPHGGGDSSDRKSDQQREALSRCVWTDLTMPVMTAALNSKPALSDRAIAALVRGIEAAAEQPKLQK---SLKFTTLVHSLVTRYGPQLKPHVPVLRAAVGRCSTFMVKAVLAALQRME 2538 D+ + + V S R F+ ++P+ +A + SR+L+ R G S G ++D L+LPLL G DP+ AVG Q E TR+++ +P L+ L V N+ PH + + + V LN+KP LS + LV EA E+P+ ++ SLKF T++ +L+++Y Q HV L A + ++ M K L +LQ+++ Sbjct: 291 DEALSQITSALVDSNWSSRYAAIFLETSVLPKIRAAGSVISRVLLQTALRFGSSYAGSLVDSLLLPLLVGGEHDDPNNAVGPPQAEAITRILRSPDTIPADQLDKFLQKSLEAVTANDKMD-------PH-------------------LLSNESALLVFQNILNTKPVLSALTVERLVGACEAVLERPEAEQVRGSLKFATVIFTLISKYPQQCAGHVETLEAIATQLTSIMAKTTLRSLQKLK 509 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1635.4324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1635.4324.1 >prot_L-elsbetiae_contig1635.4324.1 ID=prot_L-elsbetiae_contig1635.4324.1|Name=mRNA_L-elsbetiae_contig1635.4324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=794bp MYVCGHKSRNTPNSWLVPLAPSPAFDAANSLNVAGVLDILSREELVLPVAback to top mRNA from alignment at L-elsbetiae_contig1635:9803..14623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1635.4324.1 ID=mRNA_L-elsbetiae_contig1635.4324.1|Name=mRNA_L-elsbetiae_contig1635.4324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4821bp|location=Sequence derived from alignment at L-elsbetiae_contig1635:9803..14623+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1635:9803..14623+ >mRNA_L-elsbetiae_contig1635.4324.1 ID=mRNA_L-elsbetiae_contig1635.4324.1|Name=mRNA_L-elsbetiae_contig1635.4324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4764bp|location=Sequence derived from alignment at L-elsbetiae_contig1635:9803..14623+ (Laminarionema elsbetiae ELsaHSoW15)back to top |