mRNA_L-elsbetiae_contig163.4301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig163.4301.1
Unique NamemRNA_L-elsbetiae_contig163.4301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig163.4301.1 vs. uniprot
Match: D8LJ78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ78_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.730e-31
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:  133 NNLEEVEPAAKKAAQKLTNFRAYLHKSSVAGCFVDLLEMTNEGVMTEAGLYPSSRYKKSRSMRQAGVGGSGSRSRPPTGSRG 378
            +N E+V+PA KKAAQKLTNFR YLHKSSVAGCFVDLL+MT+EGVMTEAGLYPSSRYK+SR+MRQ+G+G S SRSRPPTG  G
Sbjct:    7 SNPEDVQPATKKAAQKLTNFRGYLHKSSVAGCFVDLLQMTDEGVMTEAGLYPSSRYKQSRNMRQSGLGTS-SRSRPPTGLNG 87
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BLAST of mRNA_L-elsbetiae_contig163.4301.1 vs. uniprot
Match: A0A6H5JK95_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK95_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.460e-14
Identity = 51/92 (55.43%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   94 MRSIKALEASTNMNNLEEVEPAAKKAAQKLTNFRAYLHKSSVAGCFVDLLEMTNEGVMTEAGLYPSSRYKKSRSMRQAGVGGSG-SRSRPPT 366
            M+  +++EA    +N E+V+PA KKAAQKL NFR         GC       T  GVMTEAGLYPSSRYK+SR+MRQ+G+G S  SRSRPPT
Sbjct:    1 MKRFQSMEAGA-CSNPEDVQPATKKAAQKLANFR---------GC-----SSTASGVMTEAGLYPSSRYKQSRNMRQSGLGSSSRSRSRPPT 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig163.4301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ78_ECTSI1.730e-3180.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK95_9PHAE6.460e-1455.43Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig163contigL-elsbetiae_contig163:2625..5661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005060.1
Exons4
Model size435
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig163.4301.1prot_L-elsbetiae_contig163.4301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig163 2626..5661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.8534527-CDS-L-elsbetiae_contig163:2625..27981622815672.8534527-CDS-L-elsbetiae_contig163:2625..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 2626..2798 -
1691683029.0211675-CDS-L-elsbetiae_contig163:2625..27981691683029.0211675-CDS-L-elsbetiae_contig163:2625..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 2626..2798 -
1622815672.8649347-CDS-L-elsbetiae_contig163:3246..33101622815672.8649347-CDS-L-elsbetiae_contig163:3246..3310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 3247..3310 -
1691683029.0311117-CDS-L-elsbetiae_contig163:3246..33101691683029.0311117-CDS-L-elsbetiae_contig163:3246..3310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 3247..3310 -
1622815672.8781526-CDS-L-elsbetiae_contig163:3708..38221622815672.8781526-CDS-L-elsbetiae_contig163:3708..3822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 3709..3822 -
1691683029.0405345-CDS-L-elsbetiae_contig163:3708..38221691683029.0405345-CDS-L-elsbetiae_contig163:3708..3822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 3709..3822 -
1622815672.8902032-CDS-L-elsbetiae_contig163:5580..56611622815672.8902032-CDS-L-elsbetiae_contig163:5580..5661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 5581..5661 -
1691683029.0497217-CDS-L-elsbetiae_contig163:5580..56611691683029.0497217-CDS-L-elsbetiae_contig163:5580..5661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig163 5581..5661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig163.4301.1

>prot_L-elsbetiae_contig163.4301.1 ID=prot_L-elsbetiae_contig163.4301.1|Name=mRNA_L-elsbetiae_contig163.4301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
TNYQLPGPVITSHTRRYNMPGAGSSPRVQRTMRSIKALEASTNMNNLEEV
EPAAKKAAQKLTNFRAYLHKSSVAGCFVDLLEMTNEGVMTEAGLYPSSRY
KKSRSMRQAGVGGSGSRSRPPTGSRGLPNHSNSHALGHSSPNQI
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mRNA from alignment at L-elsbetiae_contig163:2625..5661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig163.4301.1 ID=mRNA_L-elsbetiae_contig163.4301.1|Name=mRNA_L-elsbetiae_contig163.4301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3037bp|location=Sequence derived from alignment at L-elsbetiae_contig163:2625..5661- (Laminarionema elsbetiae ELsaHSoW15)
ACCAACTACCAACTACCCGGGCCAGTTATAACTTCCCACACTAGACGGTA
CAATATGCCAGGAGCCGGAAGCAGTCCACGGGTGAGTCTGCAAAGTGCAT
CCAGCTGTGTTCTGGAAACAACTGCAGCACAAGGCTTCAACAGCAATAGT
CTAAGGTTACGCTTGTGTATCTAGATCTAGATAGTCTTAGATAGGTGTTC
TGTAAGATATTGTAGCATTTTGGACGCGTGCTCGCACAGCCAGGGACGTA
AAATGAGTACTTGCCGACACTGCAACCAGGGCCTCTGGGCGTGATCAAAC
CACGGCTCGGAGGTTCTCCATAAGTTTGACTATTCGGAAAGCAGCAAGCG
GCCTCTAAACTGTGCTCGGTTTTACGTACTAGTCTTCTGTCTAGATATAG
TCTAGGGTACGGAAAAGCCCCCCCCGCCCCCAATGGGAGTGGGGGGCAGA
ATCGTAAGGTATCCAACTTATCCGATAATGATGTAAGTTAAATTGTAGCA
GTAGGTAAGGAGATGATGAAGATGATGACGCCGGGGCGAAGAGCATATCT
TCAATGTCCAAGGAGGAGAACGTGGTGCGCCAAAGCAGATGTGTGCTGTT
TACTACACACAGCAATACAGCGCACGGGGAAGATACGAAACCCCGCGCAA
ACCGACCCATATGCCCTACACTACCCAACTTAGCGGTGCGAAGCACGAAG
CCAACCGTACCCCTACATAATTACCCAGCACTTGACAACCCAAACCAAGA
ACTCAAGCATAACTTTCAACGCTGCCAGCCAATCCAGCGCGGTGAAAAGA
CAAAACCCCGCGCCAACCGCGCCATACTCCACAACAACACTATTCAAACC
AACGCCAACGTAAAATAAGATCCAACAGACTGCGGAGCGCGCCTAGCACG
CACACCGGCGTCCCAACATAACCGAATCCAACCCAACTCCCGACGCGCTC
GAAAATAATCTTGTTTCGGAAACGTGGAATGTTATTTTTCCTCGGAAAAT
TCCATGGGTCGTAATTGAACGAATCCCTGCAGTGTCACTTCGTTGAACAT
CCACGAAGGTGTTTTACAAAGGAGTTGATCCCATGTAAAACTGACACGAT
ACGTGTTTCAATCGACGTGGCCTGCTGTTGACGTTGCGGAGTACACGTTC
ACGTTGTCCGCTGCAGCTGATTCGTGTGTACGTTACAGCAGACATGCCCT
CCTCCTCTGATCCCTCTAGCCGTGCTGGTGACACGCCACTGCCATGCACG
GAAGTGTTTGAAGGTAATGGTGGTGTTCTGAGCTCGTTCGTGTTGATCAA
ATGGTGGTGTTCAATCCGACACGGACGAGTGAGCCGTGGGAAAACACACA
CACACACACAAATCGTGCCTACTCCATTTCCTAGTAGTACGACGTACGAC
GTTTCTGTGAATGGTTAATTCGGGTGATGTACTACCTTGAACGTGTGTGA
CTCTGGAAATACCGCTCACAAGCGACCCGTACACTGCAGCCAGTAGAGCA
TAGACCACAACGGTTTCCTCGCATAGTCTATGGTCCAGGGTTGTGCTCAA
AAGGCCTCTCTCCAGTGGCCGTGTCCCGCGCCGGTGCTGATATTGTTTTT
GCGGAATGTAGTGTAGACTTAGACATATATATCTAGACTACATAAAGCCT
GTCCGAGCTTGGAGCATCTTCAAAGGTGGCGATACAACAGTGCAAAGAGA
TTCGAAGTTCAACGCCCTCCTGCCGGCGGCCCCTTATTTAGATATGGCCT
ATCATACATATGTAGCCCTCACGAACGAGCGTTTCTGAACGCCGGCTATC
TGAAAGTGTATCTTTGCTGTGTTTGCGCATCTGTCCCAGGTCCAGCGGAC
AATGAGGAGCATAAAGGCGCTCGAGGCGAGCACAAACATGAACAACCTCG
AAGAAGTGGAGCCAGCGGCGAAAAAGGCGGCGCAGAAGCTCACCAACTTC
AGGGTAAGCTGCGACGCGGCCCTCTGGTCGAGCTATCCCCCCAAAGAAAA
GTAGAAACGGACCAGGCATTGTTAAGGACGTGGTGTGTTTCTGCACAACG
ATATTTCAACGAAGAGTTACCTTGTTTACGCGAAACGCCGCCCGATGCAC
GAGCAGAAACAGTCGCCACGGCAAGCCAGTGGGTACATATATAACTATGT
ACTACTGTGTGTACATACGCACCACACATACAATAGGTACTACACACAGT
AGTACTAGGGTCAAGCATGTAGACTTGTGTATTGTAGTGTATTTTTGACT
GAATCTGCTATTTATTGTCAAATGGCAACGAAATGAAGCATACATGCCCG
TCTTCCTTCCTGCGCGCACGTCTTTTGATCGGGTTTTTCCCTGCTCGTCA
GGCCTACCTACACAAGTCATCGGTTGCCGGATGCTTCGTGGATCTGCTCG
AGATGACAAACGAAGGCGAGCTTTTTCTTCCATCCTCCAAAGCAACATAA
TTTGCCGAAATAGCTTAAGATACAGCAGTATTGTTGCGGCATGTCCTTTC
CCTTTTCCACACAGCACCAAGGGACGAGTAACGCGGGAGTATTGCAACAC
ACCTAAGGCTGTTGCGAGGGGAACACGGACAAGATATGTCAGGCGCGAAC
GTACATATGGCTGGAAAGCAGCAGGTCGTAAGGTCCAAGATAACGTGCAC
TTTCTTGGCACAGCGCACTTCGGACTTTAGCAACCAAGGAAGAACATTCC
CGTTTGTCACGGTTACAAGTGTGAAACACCACAACAGCAGTAGAAGATCC
AGACTGCTGTGTACGCTGTTGCCTACAACTCCTAGGACGGGGAGAAACAC
CCCGGGCCTATGTTTAAAACACAACACAAACCAAGCTCGTGTCCCTGACC
GAAAAATCCAAAGGAGTCATGACGGAGGCGGGTCTCTACCCATCCAGCCG
GTACAAGAAGTCACGAAGCATGCGACAGGCGGGGGTAGGCGGCAGCGGCT
CCCGTTCCCGACCTCCAACCGGCAGCCGCGGCCTCCCCAACCACAGCAAC
AGCCACGCGTTGGGCCATTCATCTCCCAATCAAATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig163:2625..5661-

>mRNA_L-elsbetiae_contig163.4301.1 ID=mRNA_L-elsbetiae_contig163.4301.1|Name=mRNA_L-elsbetiae_contig163.4301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig163:2625..5661- (Laminarionema elsbetiae ELsaHSoW15)
ACCAACTACCAACTACCCGGGCCAGTTATAACTTCCCACACTAGACGGTA
CAATATGCCAGGAGCCGGAAGCAGTCCACGGACCAACTACCAACTACCCG
GGCCAGTTATAACTTCCCACACTAGACGGTACAATATGCCAGGAGCCGGA
AGCAGTCCACGGGTCCAGCGGACAATGAGGAGCATAAAGGCGCTCGAGGC
GAGCACAAACATGAACAACCTCGAAGAAGTGGAGCCAGCGGCGAAAAAGG
CGGCGCAGAAGCTCACCAACTTCAGGGTCCAGCGGACAATGAGGAGCATA
AAGGCGCTCGAGGCGAGCACAAACATGAACAACCTCGAAGAAGTGGAGCC
AGCGGCGAAAAAGGCGGCGCAGAAGCTCACCAACTTCAGGGCCTACCTAC
ACAAGTCATCGGTTGCCGGATGCTTCGTGGATCTGCTCGAGATGACAAAC
GAAGGCCTACCTACACAAGTCATCGGTTGCCGGATGCTTCGTGGATCTGC
TCGAGATGACAAACGAAGGAGTCATGACGGAGGCGGGTCTCTACCCATCC
AGCCGGTACAAGAAGTCACGAAGCATGCGACAGGCGGGGGTAGGCGGCAG
CGGCTCCCGTTCCCGACCTCCAACCGGCAGCCGCGGCCTCCCCAACCACA
GCAACAGCCACGCGTTGGGCCATTCATCTCCCAATCAAATCGAGTCATGA
CGGAGGCGGGTCTCTACCCATCCAGCCGGTACAAGAAGTCACGAAGCATG
CGACAGGCGGGGGTAGGCGGCAGCGGCTCCCGTTCCCGACCTCCAACCGG
CAGCCGCGGCCTCCCCAACCACAGCAACAGCCACGCGTTGGGCCATTCAT
CTCCCAATCAAATC
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