mRNA_L-elsbetiae_contig16238.4266.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16238.4266.1
Unique NamemRNA_L-elsbetiae_contig16238.4266.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: D8LK76_ECTSI (Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (C-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK76_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 6.250e-72
Identity = 123/165 (74.55%), Postives = 131/165 (79.39%), Query Frame = 1
Query:    1 RVTVTRARNIVKTVQAFGERNAPKSIEPPPETDSSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAE--GEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            RVT  RAR+IVKTVQAFGERN+PK IEPPP+TDSSA+WFQAWSRKLVEASHRTPLVVGVFQNQP+EEIRRIV+ETGLDLVQLHGDEG+EACAECGVPALRVVHVPA   GEE                        +RAE VLAQ PPNFAAGVLLDTSV G KG
Sbjct:  159 RVTEKRARDIVKTVQAFGERNSPKHIEPPPQTDSSAEWFQAWSRKLVEASHRTPLVVGVFQNQPMEEIRRIVAETGLDLVQLHGDEGMEACAECGVPALRVVHVPAAAPGEERVESVLVGGERASPSAK-------SRAEEVLAQAPPNFAAGVLLDTSVKGVKG 316          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A835YVM1_9STRA (Indole-3-glycerol phosphate synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM1_9STRA)

HSP 1 Score: 145 bits (366), Expect = 8.420e-38
Identity = 80/166 (48.19%), Postives = 99/166 (59.64%), Query Frame = 1
Query:    1 RVTVTRARNIVKTVQAFGERNAPKSIEPPPETD---SSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            RV+V  AR IV  V+AFGER+  K++ PP        +A+WF  W+  L E S RTPLVVGVFQ+QP++ +R   +  GLDLVQLHGDEG +ACA CGVPALRVVHVP     E                         A+A+LA + P  AA VLLDTSV G++G
Sbjct:  360 RVSVEAAREIVAAVRAFGERSGVKALAPPXXXXXXAGAAEWFTRWAETLTEGSRRTPLVVGVFQDQPLDHVRETAAAAGLDLVQLHGDEGWDACAHCGVPALRVVHVPTSPSGEGEGDAA-----------------VTADAILAALRPGAAAAVLLDTSVGGARG 508          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A067CZ16_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZ16_SAPPC)

HSP 1 Score: 124 bits (310), Expect = 4.410e-30
Identity = 72/163 (44.17%), Postives = 92/163 (56.44%), Query Frame = 1
Query:    4 VTVTRARNIVKTVQAFGERNAPKSIEPPPET-DSSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            V +  A++IV+ ++ FGER++     P  ET   SA WFQA SR L  AS RTPLVVGVFQNQ  E I  +V+E GLDLVQLHGDEG E CA+  VPA+RVVH+P     +                          +A+L  + P +A  +LLDT+V G  G
Sbjct:  320 VEIQTAKDIVQAIRQFGERSSRHEFPPRIETKQGSAPWFQAQSRLLTLASARTPLVVGVFQNQSAEAINAVVAEVGLDLVQLHGDEGFEICADLIVPAIRVVHLPGGTTGDT----------------------VNMDAILEHIKPGYAMALLLDTTVKGQMG 460          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A485KLZ7_9STRA (Aste57867_9020 protein n=2 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLZ7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 8.290e-28
Identity = 69/168 (41.07%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    4 VTVTRARNIVKTVQAFGERNAPKSIE------PPPETDSSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            V+V  A++IV  V+ FGER  P  I+        P  +S   WFQ+ ++KL  AS RTPLVVGVFQNQ +  I  +V + GLDLVQLHGDEG E C +  VPA+RVVH+P                                EA+   V P +A  +LLDT+V G  G
Sbjct:  327 VSVEAAKSIVDVVRKFGERTTPVKIDVAPLESAQPSIESIGAWFQSHAKKLTAASARTPLVVGVFQNQSVAFINDMVDQVGLDLVQLHGDEGFEICRDLKVPAIRVVHLPGYNSA----------------------GSVNVEAIKEHVKPGYAVALLLDTAVKGQMG 472          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A1V9ZFW3_9STRA (N-(5'-phosphoribosyl)anthranilate isomerase indole-3-glycerol-phosphate synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFW3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.730e-27
Identity = 68/159 (42.77%), Postives = 86/159 (54.09%), Query Frame = 1
Query:   19 ARNIVKTVQAFGERNAPKSIEPPPET--DSSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            A+ +V  ++ FGER+A  +    P    D++A WFQ+  R L  A  RTPLVVGVFQN   EEI  IV E GLDLVQLHGDEG E CAE  VPA+RVVH+P     +                          EA++  + P +A  +LLDT+V G  G
Sbjct:  337 AKTVVSAIRRFGERSARHAFPARPAVVGDTTA-WFQSQGRLLAAACARTPLVVGVFQNHTAEEINAIVEEVGLDLVQLHGDEGYEICAELSVPAIRVVHLPGGATGDT----------------------VNLEAIVEHIKPGYAMALLLDTTVKGQMG 472          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A1W0A6C8_9STRA (N-(5'-phosphoribosyl)anthranilate isomerase indole-3-glycerol-phosphate synthase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6C8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 9.700e-27
Identity = 67/163 (41.10%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    4 VTVTRARNIVKTVQAFGERNAPKSIEPPPETDSSAD-WFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            +  T A++IV++++ FGER+      P    D S   WFQ  +++L +A  RTPLVVGVFQNQ  +EI  I  E GLDLVQLHGDEG E C    VPA+RVVH+P     +                          EA+L+ V P +A  +LLDT+V G  G
Sbjct:  322 INTTVAKSIVESIRKFGERSDRHVFAPDHTKDESTPAWFQRNAKQLSQACSRTPLVVGVFQNQSAQEINAIAQEVGLDLVQLHGDEGYEICESLVVPAIRVVHLPGFTSGDS----------------------VNIEAILSHVKPGYAIALLLDTAVKGQMG 462          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A024ULY2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULY2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 7.250e-26
Identity = 65/169 (38.46%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    4 VTVTRARNIVKTVQAFGERNAPKSIE-------PPPETDSSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            V +  A +IV+ V+ FGER++  +IE        P   D+ + WFQ+ ++KL  AS RTPLVVGVFQNQ +E +  +    GLDL+QLHGDEG E C +  VPA+RVVH+P                                EA+   V   +A  +LLDT+V G  G
Sbjct:  329 VDLDTAADIVQVVRKFGERSSRVTIELDTFPSSSPSSMDTISTWFQSHAKKLTAASARTPLVVGVFQNQSVEYMNHVAETVGLDLIQLHGDEGFEVCRDLVVPAIRVVHLPG----------------------FHTGGSVNVEAIKENVQAGYAVAILLDTAVKGQMG 475          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A6G0XDS0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDS0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.490e-25
Identity = 68/168 (40.48%), Postives = 88/168 (52.38%), Query Frame = 1
Query:    4 VTVTRARNIVKTVQAFGERNAPKSIEPPP------ETDSSADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFAAGVLLDTSVNGSKG 489
            V++  A+ IV  V+ FGER     +E  P        D+ + WFQ+ ++KL  AS RTPLVVGVFQNQ  + I  +V + GLDLVQLHGDEG E C E  VPA+RVVH+P  G E                           EA+   V   +A  +LLDT++ G  G
Sbjct:  327 VSIDNAKAIVDAVRKFGERTTRVKVEVDPLVPSTQSIDTISAWFQSHAKKLTLASARTPLVVGVFQNQSADYINAMVDQVGLDLVQLHGDEGFEICRELTVPAIRVVHLP--GFESGGS--------------------VNVEAIKEHVKAGYAIALLLDTAIKGQMG 472          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A7S2UZ74_9STRA (Phosphoribosylanthranilate isomerase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ74_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.330e-25
Identity = 59/129 (45.74%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  106 ADWFQAWSRKLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGEEEXXXXXXXXXXXXXXXXXXXXXXXARAEAVLAQVPPNFA--AGVLLDTSVNGSK 486
            ++WF AW+ +L + S RTPLVVGVFQ+QP+EE+ RI  E GLDLVQLHGDE  + C++  VP+LRVVH+ A GE                           AE VL Q        A +LLDT+VNG K
Sbjct:    7 SEWFGAWAVELAKRSRRTPLVVGVFQDQPLEEMCRIAEEVGLDLVQLHGDEPEDICSQLPVPSLRVVHLAASGE-------------------------VTAEEVLDQEGAQVGGPAALLLDTAVNGKK 110          
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Match: A0A7S2KFI5_9STRA (Phosphoribosylanthranilate isomerase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFI5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.400e-24
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 1
Query:    4 VTVTRARNIVKTVQAFGERNAPKSIEPPPETDSSADWFQAWSR-KLVEASHRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALRVVHVPAEGE 327
            V+V +A++IV  V+AFGER     I      +++A       + + +E + R PLVVGVFQN+P +EI  I +E GLD VQLHGDEG +AC+EC VPA+RVVH+ A+ +
Sbjct:    1 VSVEQAKDIVTAVRAFGERVGATKINVDGNNNNAAPLPSLVKKARAIEVASRRPLVVGVFQNKPTKEINAIAAEVGLDCVQLHGDEGFQACSECSVPAIRVVHMEADND 109          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16238.4266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK76_ECTSI6.250e-7274.55Bifunctional Indole-3-Glycerol Phosphate Synthase/... [more]
A0A835YVM1_9STRA8.420e-3848.19Indole-3-glycerol phosphate synthase-domain-contai... [more]
A0A067CZ16_SAPPC4.410e-3044.17Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A485KLZ7_9STRA8.290e-2841.07Aste57867_9020 protein n=2 Tax=Aphanomyces stellat... [more]
A0A1V9ZFW3_9STRA2.730e-2742.77N-(5'-phosphoribosyl)anthranilate isomerase indole... [more]
A0A1W0A6C8_9STRA9.700e-2741.10N-(5'-phosphoribosyl)anthranilate isomerase indole... [more]
A0A024ULY2_9STRA7.250e-2638.46Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XDS0_9STRA2.490e-2540.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2UZ74_9STRA4.330e-2545.74Phosphoribosylanthranilate isomerase (Fragment) n=... [more]
A0A7S2KFI5_9STRA1.400e-2447.71Phosphoribosylanthranilate isomerase (Fragment) n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16238contigL-elsbetiae_contig16238:272..2843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.8
Seed ortholog evalue5.7e-59
Seed eggNOG ortholog2880.D8LK76
Preferred nameTRP1
KEGG rclassRC00010,RC00944,RC00945,RC02148,RC02414
KEGG koko:K01656,ko:K01817,ko:K13501
KEGG ReactionR00985,R00986,R03508,R03509
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00023
Hectar predicted targeting categoryother localisation
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004049,GO:0004425,GO:0004640,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005950,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016829,GO:0016830,GO:0016831,GO:0016832,GO:0016833,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0032991,GO:0033984,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494
EggNOG free text desc.phosphoribosylanthranilate isomerase activity
EggNOG OGsCOG0134@1,COG0135@1,KOG4201@2759,KOG4202@2759
EC4.1.1.48,4.1.3.27,5.3.1.24
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16238.4266.1prot_L-elsbetiae_contig16238.4266.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16238 272..2843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.6121044-CDS-L-elsbetiae_contig16238:271..5591622815670.6121044-CDS-L-elsbetiae_contig16238:271..559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16238 272..559 -
1691683027.632778-CDS-L-elsbetiae_contig16238:271..5591691683027.632778-CDS-L-elsbetiae_contig16238:271..559Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16238 272..559 -
1622815670.6232665-CDS-L-elsbetiae_contig16238:1056..11641622815670.6232665-CDS-L-elsbetiae_contig16238:1056..1164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16238 1057..1164 -
1691683027.6487448-CDS-L-elsbetiae_contig16238:1056..11641691683027.6487448-CDS-L-elsbetiae_contig16238:1056..1164Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16238 1057..1164 -
1622815670.6342812-CDS-L-elsbetiae_contig16238:2750..28431622815670.6342812-CDS-L-elsbetiae_contig16238:2750..2843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16238 2751..2843 -
1691683027.6585746-CDS-L-elsbetiae_contig16238:2750..28431691683027.6585746-CDS-L-elsbetiae_contig16238:2750..2843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16238 2751..2843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16238.4266.1

>prot_L-elsbetiae_contig16238.4266.1 ID=prot_L-elsbetiae_contig16238.4266.1|Name=mRNA_L-elsbetiae_contig16238.4266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
RVTVTRARNIVKTVQAFGERNAPKSIEPPPETDSSADWFQAWSRKLVEAS
HRTPLVVGVFQNQPIEEIRRIVSETGLDLVQLHGDEGIEACAECGVPALR
VVHVPAEGEEEGAAAAAAGDGDPPLSFLLSSSAAARAEAVLAQVPPNFAA
GVLLDTSVNGSKG
back to top

mRNA from alignment at L-elsbetiae_contig16238:272..2843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16238.4266.1 ID=mRNA_L-elsbetiae_contig16238.4266.1|Name=mRNA_L-elsbetiae_contig16238.4266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2572bp|location=Sequence derived from alignment at L-elsbetiae_contig16238:272..2843- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTTACCGTCACTCGTGCGCGCAATATCGTGAAAACGGTCCAGGCGTT CGGGGAGCGAAATGCCCCCAAGTCCATCGAGCCGCCGCCGGAGGTGAGTG AGCGAGGAGTCAGGGCAGGCAGGGCTGGAGACGACACACACACACACACA CACACCTACATCAGTACATACATGGATGCCGCGAAGGGTTGAGTGCTTCT TGTCGGCTTGGGTTTAACGCGCGACAAACGTCTGCAGCAGCCTGGTGTGG TTGTTTTTGTTGTTGCGGTGGGTGTGTGTGTGGGTGGGTGGGTGGGTGGG TGGGTGGTTGTCTCTGTTGTTGTTGATGCCGCTGTTCGGTTGTTGTTGTT GTTGTTGTTGTCGGTGATGATTTTTTTGGCATTTGTGTATGCTTCGTATA TATTTATATAGACCTGCGCTGTCATTAGTGTTGTCGCAACGACCGAGAGA GAGAGATAATCTGCGTGGTCGCAGGCGAAACAACAGCAGCACTTGTAGCT GATCTCCCCTGGGTTGGGCATGCCCATGCCTTGAAATCGTACGAACTGCA TACCATAGCCAGCACAGCAACTACGGGGCACGATCTTCCTCTTTTTTCCG TTTGATGATTTAGGTATCGGCATCATGTTACCGTCTGCGTAGCCCCCCCC CCCCCCCCCGAATACGACAGGCGGGCCCCGTCCTTTATCTTCGTGAGGAT GCAAGGTCTATCTAACGGCTGCAGCATGCATGATCAATGAGCGCCTGCCT ACCTCCCACGCTGGAGTTTTCACCCTTCTCCCCATTTTCGCCCTCTGGGA GTACGGGTGTGTTGTGTGCGTGTTTTCGTCCCGTTTTTTCGGGCGTCTCT GTCCATTTTTCGTTGGGCCACACGTTTCGATGTGGTGTACTACACGTGTA GGCGATTTATCATGGGGTGTGTGGGGGGGGGCAGGGAAGGAGGGCGGAAG TTTTTCGTCAGCTTGTAGGCGGTGAAAAAGTCCCTATTACTCAAAAGTTG CGCTGTATATTTGTATATTTAGCGTCCGCAGAGTTTGCCCCTTGGAGGCG GGGGGGCGGGGGGGTCGTTGTTCGACGCCATCACGGAGACATTCAAGATG TCCTTCGGCCGGGGGGGGGAGGGGGGGGCATATGGCGGTTTGGGCTGTTA AAGTGTGTCTCATGTGTGTCTTTCGGTTGTTAAACGATCGATCGCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTTTGTTG GTGGTTTTGGTTGTGGTTGGTTGTGTTTTTTTTGTTCTGTTGTCTTTGGC ATCTCTCTCCNNNNNNNNNNGGGGGGGGAGTAGGGGGTTGGGGGTGTTAA AGGGGGGTCTCGTGGGTTTTTTCGGTTGTTAAAAGGATGCCCCCCCCCCC CCCCCCCCCCCCATATAGCTGCTCTCGCGTATTTGTTTTGATGCGGGTTG TGGTGTGTATGTATGTTGTCTTCGCATGAAAAGCCGTTCCGATCTCTCCA TCCATACCATACCTCTCAATGTCCGTACTAATCCAATACTTGATGCGGTC AGTTCCCTGGTCACAGGCTTTAACTTATACCTAAGAAAAGGTACACGTGC TGTTCGTTTTTATGCAAAAAATTGTACTGGTACATTGTACATTGTTTGTG CGGCGTTCGGTCCCTTTTTTTTTCTGCAGACTGATTCCAGCGCAGATTGG TTCCAGGCGTGGTCGAGAAAGCTCGTCGAGGCGAGCCACCGGACGCCCCT CGTTGTCGGCGTCTTCCAGAACCAGCCCATCGAAGAGGTGCGTGAGAGTC ACGCGCCGGCCTCGCGCGCTCGTGGTGCGGACTAATTCATGTTCCGGGAG GTTGTCTGGCTCGGGAGGAGAAATAAGGAGGACGGAGACGGAGAGGCGGA AATCGAATGCAATGAGCAGAGAGGGAGGCACGGAAGGAGTATTTTGTATG CGGAGAAGCGCACAAGGGGATAGCGAGGGAAAGAGGGAGGCATGGAGAGG GGCAGGGAGATATATATATATATATATATATACAGAGAGGGACAAAGAGA GAGAGGAGATACATTGTTATAGAGACAGATACAGAGATAAAATACAACAG GAGCTACATAAGAGGCAAGATATATCAAAACACAAAAAAAAAACTAGATG TGACGAGCAGCGACAACAATGATTAGCTCTCCGTACAACACGCTTCGTTT GCGCTGCTGCCTCGCCCCCCCCCCCCCCACCCCCCACCCCCCGCACGCAC GGGCACGCACGCGCGCACCGTTCCCCCGTCGCAGATCCGGCGAATAGTAT CGGAGACGGGTCTGGACCTCGTCCAGCTTCACGGGGACGAGGGAATAGAG GCCTGCGCCGAGTGCGGGGTGCCGGCCCTTCGCGTCGTGCACGTGCCGGC GGAGGGAGAGGAGGAGGGTGCCGCCGCCGCCGCCGCCGGCGACGGAGACC CGCCGTTGTCTTTTTTGTTGTCTTCTTCCGCCGCGGCGCGGGCCGAGGCG GTGCTGGCGCAGGTTCCTCCGAACTTTGCGGCCGGGGTTCTGCTCGACAC CTCCGTGAACGGGTCGAAGGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16238:272..2843-

>mRNA_L-elsbetiae_contig16238.4266.1 ID=mRNA_L-elsbetiae_contig16238.4266.1|Name=mRNA_L-elsbetiae_contig16238.4266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig16238:272..2843- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTTACCGTCACTCGTGCGCGCAATATCGTGAAAACGGTCCAGGCGTT
CGGGGAGCGAAATGCCCCCAAGTCCATCGAGCCGCCGCCGGAGAGGGTTA
CCGTCACTCGTGCGCGCAATATCGTGAAAACGGTCCAGGCGTTCGGGGAG
CGAAATGCCCCCAAGTCCATCGAGCCGCCGCCGGAGACTGATTCCAGCGC
AGATTGGTTCCAGGCGTGGTCGAGAAAGCTCGTCGAGGCGAGCCACCGGA
CGCCCCTCGTTGTCGGCGTCTTCCAGAACCAGCCCATCGAAGAGACTGAT
TCCAGCGCAGATTGGTTCCAGGCGTGGTCGAGAAAGCTCGTCGAGGCGAG
CCACCGGACGCCCCTCGTTGTCGGCGTCTTCCAGAACCAGCCCATCGAAG
AGATCCGGCGAATAGTATCGGAGACGGGTCTGGACCTCGTCCAGCTTCAC
GGGGACGAGGGAATAGAGGCCTGCGCCGAGTGCGGGGTGCCGGCCCTTCG
CGTCGTGCACGTGCCGGCGGAGGGAGAGGAGGAGGGTGCCGCCGCCGCCG
CCGCCGGCGACGGAGACCCGCCGTTGTCTTTTTTGTTGTCTTCTTCCGCC
GCGGCGCGGGCCGAGGCGGTGCTGGCGCAGGTTCCTCCGAACTTTGCGGC
CGGGGTTCTGCTCGACACCTCCGTGAACGGGTCGAAGGGTATCCGGCGAA
TAGTATCGGAGACGGGTCTGGACCTCGTCCAGCTTCACGGGGACGAGGGA
ATAGAGGCCTGCGCCGAGTGCGGGGTGCCGGCCCTTCGCGTCGTGCACGT
GCCGGCGGAGGGAGAGGAGGAGGGTGCCGCCGCCGCCGCCGCCGGCGACG
GAGACCCGCCGTTGTCTTTTTTGTTGTCTTCTTCCGCCGCGGCGCGGGCC
GAGGCGGTGCTGGCGCAGGTTCCTCCGAACTTTGCGGCCGGGGTTCTGCT
CGACACCTCCGTGAACGGGTCGAAGGGT
back to top