mRNA_L-elsbetiae_contig16225.4259.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16225.4259.1
Unique NamemRNA_L-elsbetiae_contig16225.4259.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16225.4259.1 vs. uniprot
Match: A0A2U7UDZ7_9VIRU (Ankyrin repeat domain containing protein n=1 Tax=Pandoravirus macleodensis TaxID=2107707 RepID=A0A2U7UDZ7_9VIRU)

HSP 1 Score: 57.4 bits (137), Expect = 1.990e-8
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 1 
Query:    1 VQVLKWARANGAPWNSEACTDAVRGGHLHILQWLRMSGCS 120
            + VLKWA ANG PW+ +AC DA  GGHL +L WL   G S
Sbjct:  101 MTVLKWAEANGCPWDYDACIDAASGGHLGVLLWLVKGGDS 140
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BLAST of mRNA_L-elsbetiae_contig16225.4259.1 vs. uniprot
Match: A0A836CII6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CII6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-8
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 VLKWARANGAPWNSEACTDAVRGGHLHILQWLRMSGCSWDR 129
            VL+ A+ NG P +++AC  AVRGG LH+LQ+LR  GC WD+
Sbjct:  118 VLRDAQTNGVPRDAQACRAAVRGGQLHVLQFLRHIGCRWDK 158
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BLAST of mRNA_L-elsbetiae_contig16225.4259.1 vs. uniprot
Match: S4W2I8_9VIRU (Ankyrin repeat domain containing protein n=1 Tax=Pandoravirus salinus TaxID=1349410 RepID=S4W2I8_9VIRU)

HSP 1 Score: 53.1 bits (126), Expect = 6.300e-7
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    7 VLKWARANGAPWNSEACTDAVRGGHLHIL 93
            V++WARANG PW++EAC  A RGGHL +L
Sbjct:   62 VMRWARANGCPWDAEACAGAARGGHLRLL 90
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BLAST of mRNA_L-elsbetiae_contig16225.4259.1 vs. uniprot
Match: A0A2V0P128_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P128_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 1.070e-5
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 VQVLKWARANGAPWNSEACTDAVRGGHLHILQWLR 105
            ++ L+ ARA G  W++  C++A RGGHL +LQWLR
Sbjct:  130 LEALQCARALGCEWSAHTCSEAARGGHLAVLQWLR 164
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16225.4259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2U7UDZ7_9VIRU1.990e-857.50Ankyrin repeat domain containing protein n=1 Tax=P... [more]
A0A836CII6_9STRA2.040e-856.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
S4W2I8_9VIRU6.300e-765.52Ankyrin repeat domain containing protein n=1 Tax=P... [more]
A0A2V0P128_9CHLO1.070e-551.43Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16225contigL-elsbetiae_contig16225:3284..3415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.0244336-CDS-L-elsbetiae_contig16225:3283..34151622815670.0244336-CDS-L-elsbetiae_contig16225:3283..3415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16225 3284..3415 -
1691683027.3005936-CDS-L-elsbetiae_contig16225:3283..34151691683027.3005936-CDS-L-elsbetiae_contig16225:3283..3415Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16225 3284..3415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16225.4259.1prot_L-elsbetiae_contig16225.4259.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16225 3284..3415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16225.4259.1

>prot_L-elsbetiae_contig16225.4259.1 ID=prot_L-elsbetiae_contig16225.4259.1|Name=mRNA_L-elsbetiae_contig16225.4259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=44bp
VQVLKWARANGAPWNSEACTDAVRGGHLHILQWLRMSGCSWDR*
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mRNA from alignment at L-elsbetiae_contig16225:3284..3415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16225.4259.1 ID=mRNA_L-elsbetiae_contig16225.4259.1|Name=mRNA_L-elsbetiae_contig16225.4259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=132bp|location=Sequence derived from alignment at L-elsbetiae_contig16225:3284..3415- (Laminarionema elsbetiae ELsaHSoW15)
GTGCAGGTGCTGAAGTGGGCCAGGGCGAACGGAGCCCCCTGGAACAGCGA
GGCTTGCACAGACGCGGTTCGGGGTGGGCACCTGCACATTCTTCAGTGGT
TAAGGATGAGCGGGTGCAGTTGGGATAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16225:3284..3415-

>mRNA_L-elsbetiae_contig16225.4259.1 ID=mRNA_L-elsbetiae_contig16225.4259.1|Name=mRNA_L-elsbetiae_contig16225.4259.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig16225:3284..3415- (Laminarionema elsbetiae ELsaHSoW15)
GTGCAGGTGCTGAAGTGGGCCAGGGCGAACGGAGCCCCCTGGAACAGCGA
GGCTTGCACAGACGCGGTTCGGGGTGGGCACCTGCACATTCTTCAGTGGT
TAAGGATGAGCGGGTGCAGTTGGGATAGGTGAGTGCAGGTGCTGAAGTGG
GCCAGGGCGAACGGAGCCCCCTGGAACAGCGAGGCTTGCACAGACGCGGT
TCGGGGTGGGCACCTGCACATTCTTCAGTGGTTAAGGATGAGCGGGTGCA
GTTGGGATAGGTGA
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