mRNA_L-elsbetiae_contig16189.4247.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16189.4247.1
Unique NamemRNA_L-elsbetiae_contig16189.4247.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16189.4247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16189contigL-elsbetiae_contig16189:1667..3200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1111
Cds size1110
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.644469-CDS-L-elsbetiae_contig16189:1666..22601622815668.644469-CDS-L-elsbetiae_contig16189:1666..2260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16189 1667..2260 +
1691683026.3517823-CDS-L-elsbetiae_contig16189:1666..22601691683026.3517823-CDS-L-elsbetiae_contig16189:1666..2260Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16189 1667..2260 +
1622815668.6583934-CDS-L-elsbetiae_contig16189:2684..32001622815668.6583934-CDS-L-elsbetiae_contig16189:2684..3200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16189 2685..3200 +
1691683026.3610337-CDS-L-elsbetiae_contig16189:2684..32001691683026.3610337-CDS-L-elsbetiae_contig16189:2684..3200Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16189 2685..3200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16189.4247.1prot_L-elsbetiae_contig16189.4247.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16189 1667..3200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16189.4247.1

>prot_L-elsbetiae_contig16189.4247.1 ID=prot_L-elsbetiae_contig16189.4247.1|Name=mRNA_L-elsbetiae_contig16189.4247.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=370bp
AAGRDFGLGAPVAYFDAAASVDARHDSDHSEHWESAEEGGEDWPSVAAMA
ARIENPAAAAAAAGPDATGSSPEDPVLEEAMVGSSAPPGKEEVMEEEEEE
KEEPQVPATGTPSAGGAPGSGAGADGQQSEAPHAAREAGREGKPSPTTPR
PSKASPAETQSSPPEEEEPTKAAGAAAAAMGGIFGRLFGRTLSKAKIKAP
APEAGKPLIEAGVSPTKSVADGNGALPSAPPSAPDAAVSAPVAGDSMPGT
SGDTTPVRGIDDSLQVFFADAPSDPIADISSPAANGSLPEASGDLTGPDL
AGSLPPAPAAEDIGVPSATVEVVGASPAVEDVPSAAAAVEDVDASPAVEG
VGVPSAAVKDVDASPAVKDP
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mRNA from alignment at L-elsbetiae_contig16189:1667..3200+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16189.4247.1 ID=mRNA_L-elsbetiae_contig16189.4247.1|Name=mRNA_L-elsbetiae_contig16189.4247.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1534bp|location=Sequence derived from alignment at L-elsbetiae_contig16189:1667..3200+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGACGAGACTTCGGGCTCGGCGCGCCGGTGGCGTACTTCGACGC
GGCTGCGTCGGTGGACGCGAGGCACGACAGCGACCATTCAGAGCACTGGG
AGAGCGCGGAGGAGGGGGGCGAGGACTGGCCGAGCGTGGCGGCGATGGCA
GCGAGGATAGAGAACCCTGCGGCTGCCGCCGCCGCCGCCGGGCCCGACGC
GACGGGGTCCTCGCCGGAAGACCCAGTTCTCGAAGAAGCGATGGTGGGGT
CGAGCGCTCCTCCAGGAAAGGAAGAGGTGATGGAGGAGGAGGAGGAGGAG
AAGGAGGAACCTCAGGTCCCAGCTACGGGAACCCCTTCTGCTGGAGGCGC
TCCGGGTTCCGGCGCCGGCGCCGACGGTCAGCAGAGTGAGGCCCCACATG
CGGCGCGGGAGGCCGGCCGCGAGGGAAAGCCGTCGCCGACCACTCCACGC
CCATCAAAGGCGAGTCCTGCCGAGACGCAATCGTCCCCCCCGGAGGAGGA
AGAGCCGACGAAGGCGGCGGGGGCAGCAGCGGCGGCGATGGGCGGTATCT
TCGGGCGCCTGTTCGGGAGGACACTCAGCAAGGCGAAGATCAAGGTGAGA
AGAGTCGAGTGGGATTTAAAAAAAGGGGGGCGTGTCAGCGTTATGTATAT
AGGAGTACATAAATAGTTTCGCCGCGTGTTGGAAAGGGGAGATATGTTTT
TTTTTTTTTTCCTCCACTGCGACTAAATAGCTAGACGACCCAACCGGGGT
GACAGGGTGGTGAAGGGAGGTCACTCCCGTTCGGGTGGCTTTTGCGGCCG
CAGTCGGCGTGTTTGTAGGCGCAGCTCTCTTTTCTGTACAGCGGCACACG
CCACGGCCACGCGCCCTGTGACCCATCCGCGTTCGGTTCCGTTTCCTCGC
CAAGGGGAGTAAACCCAACCCAACCGCGCGTTTTCTATTTTTTGTCTTGC
TCTCCTCAACCGCGACGCGTTTTTTTCCCACACCCAACTCTTCCCACCCT
TTTTGCGTGGTGCGCCAGGCGCCTGCCCCCGAAGCCGGCAAGCCGCTGAT
CGAGGCGGGCGTGTCGCCGACGAAGTCCGTAGCCGACGGCAACGGCGCGC
TGCCGAGTGCCCCGCCCAGCGCGCCTGATGCCGCCGTCTCGGCACCGGTC
GCCGGCGACTCGATGCCCGGGACGAGCGGAGATACCACTCCCGTGCGGGG
AATCGATGACTCGCTACAGGTTTTTTTCGCGGACGCGCCGTCGGACCCTA
TAGCCGACATCTCGTCGCCCGCCGCGAACGGCTCGCTGCCCGAGGCTAGC
GGCGACCTCACCGGGCCTGACCTTGCCGGCTCCCTGCCCCCTGCACCCGC
CGCAGAGGACATAGGCGTGCCGTCTGCCACCGTGGAGGTTGTCGGCGCTT
CTCCTGCGGTAGAAGACGTACCGTCGGCCGCCGCTGCTGTGGAGGATGTC
GACGCTTCTCCCGCCGTAGAAGGCGTGGGCGTGCCGTCTGCCGCTGTGAA
GGATGTCGACGCTTCTCCTGCCGTCAAAGACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16189:1667..3200+

>mRNA_L-elsbetiae_contig16189.4247.1 ID=mRNA_L-elsbetiae_contig16189.4247.1|Name=mRNA_L-elsbetiae_contig16189.4247.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2220bp|location=Sequence derived from alignment at L-elsbetiae_contig16189:1667..3200+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGCCGGACGAGACTTCGGGCTCGGCGCGCCGGTGGCGTACTTCGACGC
GGCTGCGTCGGTGGACGCGAGGCACGACAGCGACCATTCAGAGCACTGGG
AGAGCGCGGAGGAGGGGGGCGAGGACTGGCCGAGCGTGGCGGCGATGGCA
GCGAGGATAGAGAACCCTGCGGCTGCCGCCGCCGCCGCCGGGCCCGACGC
GACGGGGTCCTCGCCGGAAGACCCAGTTCTCGAAGAAGCGATGGTGGGGT
CGAGCGCTCCTCCAGGAAAGGAAGAGGTGATGGAGGAGGAGGAGGAGGAG
AAGGAGGAACCTCAGGTCCCAGCTACGGGAACCCCTTCTGCTGGAGGCGC
TCCGGGTTCCGGCGCCGGCGCCGACGGTCAGCAGAGTGAGGCCCCACATG
CGGCGCGGGAGGCCGGCCGCGAGGGAAAGCCGTCGCCGACCACTCCACGC
CCATCAAAGGCGAGTCCTGCCGAGACGCAATCGTCCCCCCCGGAGGAGGA
AGAGCCGACGAAGGCGGCGGGGGCAGCAGCGGCGGCGATGGGCGGTATCT
TCGGGCGCCTGTTCGGGAGGACACTCAGCAAGGCGAAGATCAAGGCCGCC
GGACGAGACTTCGGGCTCGGCGCGCCGGTGGCGTACTTCGACGCGGCTGC
GTCGGTGGACGCGAGGCACGACAGCGACCATTCAGAGCACTGGGAGAGCG
CGGAGGAGGGGGGCGAGGACTGGCCGAGCGTGGCGGCGATGGCAGCGAGG
ATAGAGAACCCTGCGGCTGCCGCCGCCGCCGCCGGGCCCGACGCGACGGG
GTCCTCGCCGGAAGACCCAGTTCTCGAAGAAGCGATGGTGGGGTCGAGCG
CTCCTCCAGGAAAGGAAGAGGTGATGGAGGAGGAGGAGGAGGAGAAGGAG
GAACCTCAGGTCCCAGCTACGGGAACCCCTTCTGCTGGAGGCGCTCCGGG
TTCCGGCGCCGGCGCCGACGGTCAGCAGAGTGAGGCCCCACATGCGGCGC
GGGAGGCCGGCCGCGAGGGAAAGCCGTCGCCGACCACTCCACGCCCATCA
AAGGCGAGTCCTGCCGAGACGCAATCGTCCCCCCCGGAGGAGGAAGAGCC
GACGAAGGCGGCGGGGGCAGCAGCGGCGGCGATGGGCGGTATCTTCGGGC
GCCTGTTCGGGAGGACACTCAGCAAGGCGAAGATCAAGGCGCCTGCCCCC
GAAGCCGGCAAGCCGCTGATCGAGGCGGGCGTGTCGCCGACGAAGTCCGT
AGCCGACGGCAACGGCGCGCTGCCGAGTGCCCCGCCCAGCGCGCCTGATG
CCGCCGTCTCGGCACCGGTCGCCGGCGACTCGATGCCCGGGACGAGCGGA
GATACCACTCCCGTGCGGGGAATCGATGACTCGCTACAGGTTTTTTTCGC
GGACGCGCCGTCGGACCCTATAGCCGACATCTCGTCGCCCGCCGCGAACG
GCTCGCTGCCCGAGGCTAGCGGCGACCTCACCGGGCCTGACCTTGCCGGC
TCCCTGCCCCCTGCACCCGCCGCAGAGGACATAGGCGTGCCGTCTGCCAC
CGTGGAGGTTGTCGGCGCTTCTCCTGCGGTAGAAGACGTACCGTCGGCCG
CCGCTGCTGTGGAGGATGTCGACGCTTCTCCCGCCGTAGAAGGCGTGGGC
GTGCCGTCTGCCGCTGTGAAGGATGTCGACGCTTCTCCTGCCGTCAAAGA
CCCCGCGCCTGCCCCCGAAGCCGGCAAGCCGCTGATCGAGGCGGGCGTGT
CGCCGACGAAGTCCGTAGCCGACGGCAACGGCGCGCTGCCGAGTGCCCCG
CCCAGCGCGCCTGATGCCGCCGTCTCGGCACCGGTCGCCGGCGACTCGAT
GCCCGGGACGAGCGGAGATACCACTCCCGTGCGGGGAATCGATGACTCGC
TACAGGTTTTTTTCGCGGACGCGCCGTCGGACCCTATAGCCGACATCTCG
TCGCCCGCCGCGAACGGCTCGCTGCCCGAGGCTAGCGGCGACCTCACCGG
GCCTGACCTTGCCGGCTCCCTGCCCCCTGCACCCGCCGCAGAGGACATAG
GCGTGCCGTCTGCCACCGTGGAGGTTGTCGGCGCTTCTCCTGCGGTAGAA
GACGTACCGTCGGCCGCCGCTGCTGTGGAGGATGTCGACGCTTCTCCCGC
CGTAGAAGGCGTGGGCGTGCCGTCTGCCGCTGTGAAGGATGTCGACGCTT
CTCCTGCCGTCAAAGACCCC
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