mRNA_L-elsbetiae_contig16005.4150.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16005.4150.1
Unique NamemRNA_L-elsbetiae_contig16005.4150.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16005.4150.1 vs. uniprot
Match: A0A6H5L2H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H7_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.780e-17
Identity = 53/77 (68.83%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 SKYKKLKKKLKDAKMLKKKMMGEVTGSGASGKDKKXXXXXXXKLSTKTKSMKLDGHASASSWRFHDSGGESSDSCSS 231
            SKYKKLK  LKDAK LKK +M E  GS  S  +KK   X   KLSTKTKSM LDGHA +SSWR HDSGGESSD CSS
Sbjct:    5 SKYKKLKXTLKDAKALKK-IMDESVGS-TSSPEKKKVKXKIKKLSTKTKSMNLDGHAGSSSWRIHDSGGESSDPCSS 79
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BLAST of mRNA_L-elsbetiae_contig16005.4150.1 vs. uniprot
Match: D8LJ38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ38_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.760e-9
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:  127 KLSTKTKSMKLDGHASASSWRFHDSGGESSDSCS 228
            KLSTKTKSMKLDGHAS+SSWR H SGGESSDSCS
Sbjct:   59 KLSTKTKSMKLDGHASSSSWRIHGSGGESSDSCS 92
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16005.4150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2H7_9PHAE9.780e-1768.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ38_ECTSI1.760e-991.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16005contigL-elsbetiae_contig16005:687..2594 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionExpressed unknown protein
Ec32 orthologEc-02_004620.1
Exons2
Model size339
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.0327952-CDS-L-elsbetiae_contig16005:686..7941622815661.0327952-CDS-L-elsbetiae_contig16005:686..794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16005 687..794 +
1691683021.5008125-CDS-L-elsbetiae_contig16005:686..7941691683021.5008125-CDS-L-elsbetiae_contig16005:686..794Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16005 687..794 +
1622815661.0454621-CDS-L-elsbetiae_contig16005:2363..25941622815661.0454621-CDS-L-elsbetiae_contig16005:2363..2594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16005 2364..2594 +
1691683021.5152009-CDS-L-elsbetiae_contig16005:2363..25941691683021.5152009-CDS-L-elsbetiae_contig16005:2363..2594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16005 2364..2594 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16005.4150.1prot_L-elsbetiae_contig16005.4150.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16005 687..2594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16005.4150.1

>prot_L-elsbetiae_contig16005.4150.1 ID=prot_L-elsbetiae_contig16005.4150.1|Name=mRNA_L-elsbetiae_contig16005.4150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
SKYKKLKKKLKDAKMLKKKMMGEVTGSGASGKDKKKAKKKIKKLSTKTKS
MKLDGHASASSWRFHDSGGESSDSCSSQSSDSDWEGSSCSSSSSSSSSDG
SDGGGSDGGGSD*
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mRNA from alignment at L-elsbetiae_contig16005:687..2594+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16005.4150.1 ID=mRNA_L-elsbetiae_contig16005.4150.1|Name=mRNA_L-elsbetiae_contig16005.4150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1908bp|location=Sequence derived from alignment at L-elsbetiae_contig16005:687..2594+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGTACAAAAAGCTCAAGAAGAAACTGAAAGATGCCAAGATGCTCAA
GAAGAAAATGATGGGCGAAGTTACCGGCAGCGGGGCCTCCGGAAAGGACA
AGAAAAAGGTATTTATGCTTGTATGACCACGCCTCATCACTCTCTCACCA
AGTTGATATTTTTGTATGTTGAAGCATCCGCAACAACACTTCAAGGTTGC
TGCCGCAGTATCGGACATATTCCATGGGAACCCGCACTTTTTCTGGAAAG
GCGCCTCGCACGAGTGAAGGAACATCAAGAGCATCGGCGGTTCAATGTTC
TATATTTTCCGCTGAGGCTGGGTCTTGTCGAAGCAATCAAAATCACGAAT
CGAAATCATAATTCGATTGATGTCTGGAAAGAGCCAACAAACATCCGTTG
TGATTAGTGGCATCACGAATGACCCGGTCGTTTCGAGGCCGACCGCGCGG
GATATTCACGACTTGAATCGTATTTTGAAAAAAGAAGAAAACACTTAATT
TCAATTCGATTTGGCGAGCAGCAACCAAAGATAGAACACTTCCCCCAGTT
TGCTGGGCTGTTGGGGTTGGGAGAACTATGCCCGCATGCTCCCGGCGTGT
GCGTGCGCCTGTGGCTACTGTCGTTGATACTCTGGACGAAAATGTACGGT
TTTGGAAAGTAAGCACGCAAAGGGTGCGAACGCAAGAATCGAGAGGTCCA
GACTTGCTCTGTGGCCGTCAATATCTCATCAGGAGCAGAGTCTAGACTCA
CACCCAGCAGATGGTCATCACCACTGCTGTAGACCATACAAAGGAATGCG
GGTTGGACCATGAGCCCCGCTCACTCTCAGAGTTTCTTCGCCTGCTTAAG
TTCTGCCTTGACAGCTTTTGAGCCGGCTGTGCTTGGTAAACATCATCGTC
GTGCATCTCCTATCGGGTGCTCCGCGCTTTTTTGCCGACGTGGTCTGCAT
GTCGAAGTTCATGATTGTTTCCCCGCAGGATGCGGGCTCCTGGGGGCATG
CAACATTTAGGCTTTGACTAGACATCACACTTCCGCAAACCGAGGTTTCG
AAAGAGTTCGAGTACTGGCCGTGCGAACGCAAAATAATAGGGTTCAAACC
GCTTCTTTGCCGACATATATTTGATATTTTGCGGAGCTTGCATCTCAGCA
ACCGTTTTAGTTCACAACGTGCGTTCCAGCCCATCCCTGGGACTGCGGTC
TCGACCATGAACATCCCTGATTCTCAGGGGTGGACAAAGCCTTTGATACA
CGCGCAATCGACCTTTATGTCGGCCACATTTGCCTTGCCTTGCCATGCTG
CGAATCTGGAGGTTTCTCCGCTATATGTAAGTTGATTTCGATTTCGATTT
TGCGCGTTGCTCAATAAGACACTCGAGGGCTATTCGGTCGGAATTCGTTG
GCCCTTGCGGACTTCAACCGAATTCTGATTTCGATTTATGATTCCGATTG
CTTCGATAAGACCCGGTCTGAGCCAGCGGGGTCTGCGTCCGTAGCCGATC
GTTCATAAAGGCGCGGATGTACATATATACATACTTTACGAGATAACTCG
TAACGACCAACGCCAATAACGCCGTTCGTCTGCAGTAAACTTAGACCACA
TATTATTATCACGTCTGTCTTTATAGAATCCTGCTGAATTCTAAGGTTAC
GACGCCCGCTGCTGGTATGTACTACAGGCGAAGAAAAAGATCAAGAAGCT
CTCCACCAAGACGAAATCCATGAAACTAGACGGACACGCGAGCGCCTCCA
GCTGGCGCTTCCACGACTCGGGGGGCGAGTCGAGTGACTCCTGCTCGAGC
CAGAGCTCCGACTCTGATTGGGAAGGTTCCTCGTGTTCTAGTTCTAGTTC
TAGTTCTAGTAGTGATGGCTCGGACGGTGGTGGCTCAGACGGCGGAGGTT
CTGATTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16005:687..2594+

>mRNA_L-elsbetiae_contig16005.4150.1 ID=mRNA_L-elsbetiae_contig16005.4150.1|Name=mRNA_L-elsbetiae_contig16005.4150.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig16005:687..2594+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAAGTACAAAAAGCTCAAGAAGAAACTGAAAGATGCCAAGATGCTCAA
GAAGAAAATGATGGGCGAAGTTACCGGCAGCGGGGCCTCCGGAAAGGACA
AGAAAAAGAGCAAGTACAAAAAGCTCAAGAAGAAACTGAAAGATGCCAAG
ATGCTCAAGAAGAAAATGATGGGCGAAGTTACCGGCAGCGGGGCCTCCGG
AAAGGACAAGAAAAAGGCGAAGAAAAAGATCAAGAAGCTCTCCACCAAGA
CGAAATCCATGAAACTAGACGGACACGCGAGCGCCTCCAGCTGGCGCTTC
CACGACTCGGGGGGCGAGTCGAGTGACTCCTGCTCGAGCCAGAGCTCCGA
CTCTGATTGGGAAGGTTCCTCGTGTTCTAGTTCTAGTTCTAGTTCTAGTA
GTGATGGCTCGGACGGTGGTGGCTCAGACGGCGGAGGTTCTGATTAAGCG
AAGAAAAAGATCAAGAAGCTCTCCACCAAGACGAAATCCATGAAACTAGA
CGGACACGCGAGCGCCTCCAGCTGGCGCTTCCACGACTCGGGGGGCGAGT
CGAGTGACTCCTGCTCGAGCCAGAGCTCCGACTCTGATTGGGAAGGTTCC
TCGTGTTCTAGTTCTAGTTCTAGTTCTAGTAGTGATGGCTCGGACGGTGG
TGGCTCAGACGGCGGAGGTTCTGATTAA
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