mRNA_L-elsbetiae_contig160.4144.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig160.4144.1
Unique NamemRNA_L-elsbetiae_contig160.4144.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A6H5JNC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNC3_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 2.020e-75
Identity = 231/368 (62.77%), Postives = 259/368 (70.38%), Query Frame = 1 
Query:   37 AADDSKPVHVMELLKQFEFLSIGLGGKIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFRNRKAEMEGLKQAQRQPMKEEXXXXXXXXXXXXXXXDNADFWVPTGGAEVEAMDEVGDKSDPXXXXXXXXXRKGAAGGL------APRGGKSKARGVNKAGAQTEKTGEGSGKGDKT-RXXXXXXXXXXXXXXQENGAXXXXXXXXXXXXXXXAKKSKQQAGGKAGKLATKSGKPGPLSDDTPAASNTVAKDAATPTASXXXXXXXXXXXXXPKKKAKGGETP-EGKKDAGEASLVEAKSAAKRKHKVSEEPASNGKKKRKA 1116
            A D SKPVHVM+L+KQF+FLSIGL GKIHCALT RDLPLN+ AV QHLNSKKLKKEREWYNADFS+YEP +VAHKTNPKLLFCTLTR ELNRIPK+VEAHV+GKR+RNRKAEMEGLKQAQRQP+ E+                 A+FWVPTGGAE  AMDE G+    XXXXXXXXX              APR    K +   + G Q +K+G+  GK DKT RXXXXXXXXXXXXXX     XXXXXXXXXXXXXXX                         SDDTPA S TV +DAA  ++ XXXXXXXXXXXXXPKK ++GGETP +GK   G A  V A+ +AKRKHKVS+EP S+GKKKRKA
Sbjct:   16 ADDSSKPVHVMDLIKQFDFLSIGLRGKIHCALTNRDLPLNSAAVHQHLNSKKLKKEREWYNADFSKYEPFVVAHKTNPKLLFCTLTRIELNRIPKEVEAHVNGKRYRNRKAEMEGLKQAQRQPLGEDTEEEDEEEH-------GAEFWVPTGGAE--AMDEDGESXXXXXXXXXXXXXXXXXXXXXXXVQRAPRRA-DKDQSATREGRQ-KKSGK-EGKADKTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDTPAVSKTVVRDAALASSPXXXXXXXXXXXXXPKK-SEGGETPPKGKGGVGSAPPVAAQPSAKRKHKVSDEPTSSGKKKRKA 370
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: D7G730_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G730_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.260e-74
Identity = 187/323 (57.89%), Postives = 209/323 (64.71%), Query Frame = 1 
Query:    1 MANEGKDPAAAD---AADDSKPVHVMELLKQFEFLSIGLGGKIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFRNRKAEMEGLKQAQRQPMKEEXXXXXXXXXXXXXXXDNADFWVPTGGAEVEAMDEVGDKSDPXXXXXXXXXRKGAAGGL------APRGGKSKARGVNKAGAQTEKTGEGSGKGDKTRXXXXXXXXXXXXXXQENGAXXXXXXXXXXXXXXX---------AKKSKQQAGGKAGKLATKSGKPGPLSDDTPAASNTVAKDAA 915
            MA +GK  A  +   A D SKPVHVM+L+KQF+FLSIGL GKIHCALT RDLPLN+ AV QHLNSKKLKKEREWYNADFS+YEP +VAHKTNPKLLFCTLTR ELNRIPK+VEAHV+GKR+ NRKAEMEGLKQAQRQP+ E+               D A+ WVPTGGAE  AMDE G+    XXXXXXXXX              APR  + K +   + G Q  KT    GK DKT+              QE+G XXXXXXXXXX                KSKQ+ G  A KLA KS KP P SDDTPA S TV +DAA
Sbjct:    1 MAKQGKGSAPKEMPGADDSSKPVHVMDLIKQFDFLSIGLTGKIHCALTNRDLPLNSTAVHQHLNSKKLKKEREWYNADFSKYEPFVVAHKTNPKLLFCTLTRIELNRIPKEVEAHVNGKRYGNRKAEMEGLKQAQRQPLGEDSEEEDQEE-------DGAEIWVPTGGAE--AMDEDGESDQXXXXXXXXXXXXXXXXXXXXXXKRAPRR-EDKDQSAAREGRQ--KTSGKKGKADKTKRKAEGG--------QEDGGXXXXXXXXXXGGQGAKGQADKKKGCAKSKQRGGKGAAKLAAKSPKPSPRSDDTPAVSKTVVRDAA 303
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A835YV33_9STRA (Surfeit locus protein 2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV33_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.170e-27
Identity = 61/119 (51.26%), Postives = 82/119 (68.91%), Query Frame = 1 
Query:   55 PVHVMELLKQFEFLSIGLGGKIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFRNRKAEMEGLKQAQRQPMK 411
            P  V  ++ Q +FLS+   GK HC +T  D+P    A++ HL SKK  K+R+WY+ DFS+YEP IVA+K +PKLLFC LT K LNRIP+++E HV+GKRF+   AE E   QA++Q  K
Sbjct:   34 PPEVQAIIDQHDFLSLNEHGKAHCNVTNLDIPARVDALKTHLASKKFIKQRDWYSYDFSKYEPHIVANKKDPKLLFCKLTMKPLNRIPEEIETHVNGKRFKRLVAEAEAA-QARKQANK 151
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A7R9UEL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEL5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.370e-23
Identity = 55/118 (46.61%), Postives = 81/118 (68.64%), Query Frame = 1 
Query:   22 PAAADAADDSKPVHVMELLKQFEFLSIGLGG-KIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFRNRKAE 372
            P +AD ++D     V +L+ +   L + LG  K+ C+LT+ ++P +  AVQ +L SK  +K++EWY+ADFS+YEP +VAHK + + LFC +TRK LNRIPK+V+ H  GKRF+  K E
Sbjct:   14 PMSADISED-----VRKLVAETACLDLDLGRRKVVCSLTRHEMPPSAPAVQAYLRSKAFRKQKEWYSADFSKYEPYVVAHKKDGRKLFCNVTRKSLNRIPKEVQRHWEGKRFQRLKVE 126
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A7S2V5T7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5T7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.590e-23
Identity = 65/171 (38.01%), Postives = 102/171 (59.65%), Query Frame = 1 
Query:   40 ADDSKPVHVMELLKQF-EFLSIGLG---GKIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFRNRKAEMEGLKQAQRQPMKEEXXXXXXXXXXXXXXXDNADFWVPTGGAEVEAMDEVGDKSDP 540
            A D + + + +L++Q  + LS+ +     ++HC++T  D+P ++ +VQ HL SKK KK++EWY  D+SE+EP IV HK + +LLFCTLTR+ LN+IP QV+ HV GKRF   +AE E +  A++   K +               +   FWVP      ++ +EVG  ++P
Sbjct:    8 AKDGENMSLAQLIEQNKDILSLVVREGKSRVHCSVTGHDIPPSSNSVQAHLKSKKFKKQKEWYKQDYSEFEPYIVPHKFDSRLLFCTLTRRPLNKIPNQVKKHVEGKRFIRLRAEKEKIL-AEKGSKKNKLAEGLPEGEKSDTKMEEDAFWVPP-----DSDEEVGVLNEP 172
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: F0X0C8_9STRA (Uncharacterized protein AlNc14C476G11866 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0C8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.010e-19
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 1 
Query:  115 KIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRF 354
            ++HC LTK D+      + QHL SK L K + WYN DFS+Y P I+ H+  PK L+C +T+  LNRIP+QVE HVSGKR+
Sbjct:   32 RVHCTLTKHDMVPKETVILQHLRSKALLKAKNWYNYDFSKYRPYIIPHRRKPKCLYCNVTQTTLNRIPEQVEKHVSGKRY 111
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A484DXM0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DXM0_BRELC)

HSP 1 Score: 93.2 bits (230), Expect = 9.220e-18
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:   55 PVHVMELLKQFEFLSIGLGGK-------IHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFRNRK 366
            P  V  LL Q EFL +    K       I C +T+ +L      ++QHL SKK  K R+WYN D+S+YEP IV H+  PK L+C +T   LNRIP ++E HV GKR++  K
Sbjct:    4 PPDVQHLLDQHEFLKVVESSKGDSKHLRIKCEITQHELVPCVDVIEQHLKSKKFVKARDWYNHDYSQYEPYIVPHRKLPKQLYCNVTGTVLNRIPFELEKHVQGKRYKRLK 114
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A1V9ZPX0_9STRA (Cytochrome c oxidase assembly protein COX20, mitochondrial (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZPX0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 6.440e-16
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 1 
Query:   46 DSKPVHVMELLKQFEFLSI-GLGG----KIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRF 354
            DS    +++ ++  + +SI G  G    ++ C+ T  ++P     +  H+NSK+ KK  +WYN DFS+YEP IVAH+  PK L+C +T   LNRIP +VE H+ GK+F
Sbjct:  182 DSAVKALVDTIESLDIISIDGENGTKVIRVKCSTTGHEMPPRVDVINAHINSKRFKKATKWYNHDFSQYEPYIVAHRRKPKCLYCNVTGIVLNRIPSEVEKHMKGKKF 289
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: D8LW92_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LW92_BLAHO)

HSP 1 Score: 84.0 bits (206), Expect = 8.890e-16
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:  112 GKIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFR 357
            G+IHC LT  D+  +   VQ+++ +KK    + WYN D+S+YEP I+ H+++PK LFC +T   LN+IP+ VE  V+ K+F+
Sbjct:   21 GRIHCKLTNHDIVADMSEVQKYIKTKKYLHAKNWYNYDYSKYEPYIIPHRSDPKKLFCIVTMTSLNKIPEVVERVVNSKKFK 102
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Match: A0A196SJP5_BLAHN (Surfeit locus protein 2 n=2 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SJP5_BLAHN)

HSP 1 Score: 81.6 bits (200), Expect = 6.400e-14
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:  112 GKIHCALTKRDLPLNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRKELNRIPKQVEAHVSGKRFR 357
            GK+HC +T  D+      V++H+ S K    + WYN D+S+Y+P I+ H+++PK LFC +T+  +N+IP+ VE  V+ K+F+
Sbjct:   21 GKVHCNVTNHDIVAKMSEVEKHMKSAKYLHAKNWYNYDYSKYKPYIIEHQSDPKKLFCIVTKTSVNKIPEAVERMVNSKKFK 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig160.4144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JNC3_9PHAE2.020e-7562.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G730_ECTSI2.260e-7457.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV33_9STRA1.170e-2751.26Surfeit locus protein 2-domain-containing protein ... [more]
A0A7R9UEL5_9STRA1.370e-2346.61Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2V5T7_9STRA1.590e-2338.01Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0X0C8_9STRA3.010e-1952.50Uncharacterized protein AlNc14C476G11866 n=1 Tax=A... [more]
A0A484DXM0_BRELC9.220e-1844.14Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A1V9ZPX0_9STRA6.440e-1640.74Cytochrome c oxidase assembly protein COX20, mitoc... [more]
D8LW92_BLAHO8.890e-1643.90Uncharacterized protein n=1 Tax=Blastocystis homin... [more]
A0A196SJP5_BLAHN6.400e-1440.24Surfeit locus protein 2 n=2 Tax=Blastocystis sp. s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig160contigL-elsbetiae_contig160:17294..20540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.8
Seed ortholog evalue3.8e-66
Seed eggNOG ortholog2880.D7G730
Preferred nameSurf2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0016020,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071944
EggNOG free text desc.Surfeit locus protein 2 (SURF2)
EggNOG OGs2A8IF@1,2QW1X@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSurfeit locus 2
Ec32 orthologEc-01_011240.1
Exons4
Model size1675
Cds size1119
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig160.4144.1prot_L-elsbetiae_contig160.4144.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig160 17294..19984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.1659992-CDS-L-elsbetiae_contig160:17293..175051622815660.1659992-CDS-L-elsbetiae_contig160:17293..17505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 17294..17505 +
1691683020.8244302-CDS-L-elsbetiae_contig160:17293..175051691683020.8244302-CDS-L-elsbetiae_contig160:17293..17505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 17294..17505 +
1622815660.1810658-CDS-L-elsbetiae_contig160:18354..186221622815660.1810658-CDS-L-elsbetiae_contig160:18354..18622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 18355..18622 +
1691683020.8362281-CDS-L-elsbetiae_contig160:18354..186221691683020.8362281-CDS-L-elsbetiae_contig160:18354..18622Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 18355..18622 +
1622815660.1941106-CDS-L-elsbetiae_contig160:19019..196101622815660.1941106-CDS-L-elsbetiae_contig160:19019..19610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 19020..19610 +
1691683020.8462684-CDS-L-elsbetiae_contig160:19019..196101691683020.8462684-CDS-L-elsbetiae_contig160:19019..19610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 19020..19610 +
1622815660.2085583-CDS-L-elsbetiae_contig160:19936..199841622815660.2085583-CDS-L-elsbetiae_contig160:19936..19984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 19937..19984 +
1691683020.8559566-CDS-L-elsbetiae_contig160:19936..199841691683020.8559566-CDS-L-elsbetiae_contig160:19936..19984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 19937..19984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.2221944-UTR-L-elsbetiae_contig160:19984..205401622815660.2221944-UTR-L-elsbetiae_contig160:19984..20540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig160 19985..20540 +
1691683020.8649518-UTR-L-elsbetiae_contig160:19984..205401691683020.8649518-UTR-L-elsbetiae_contig160:19984..20540Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig160 19985..20540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig160.4144.1

>prot_L-elsbetiae_contig160.4144.1 ID=prot_L-elsbetiae_contig160.4144.1|Name=mRNA_L-elsbetiae_contig160.4144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=373bp
MANEGKDPAAADAADDSKPVHVMELLKQFEFLSIGLGGKIHCALTKRDLP
LNTVAVQQHLNSKKLKKEREWYNADFSEYEPLIVAHKTNPKLLFCTLTRK
ELNRIPKQVEAHVSGKRFRNRKAEMEGLKQAQRQPMKEESEEEEEEDEEE
EGEEDNADFWVPTGGAEVEAMDEVGDKSDPEQEEEEAEERKGAAGGLAPR
GGKSKARGVNKAGAQTEKTGEGSGKGDKTRKSLKGKRKEDGDGEQENGAS
GANGTKGKAGKKGGAKKSKQQAGGKAGKLATKSGKPGPLSDDTPAASNTV
AKDAATPTASPSPSPKVKNKAKSPKKKAKGGETPEGKKDAGEASLVEAKS
AAKRKHKVSEEPASNGKKKRKA*
back to top

mRNA from alignment at L-elsbetiae_contig160:17294..20540+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig160.4144.1 ID=mRNA_L-elsbetiae_contig160.4144.1|Name=mRNA_L-elsbetiae_contig160.4144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3247bp|location=Sequence derived from alignment at L-elsbetiae_contig160:17294..20540+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACGAAGGTAAAGACCCCGCTGCAGCAGATGCCGCGGATGATTC
GAAGCCTGTCCATGTGATGGAGCTGCTGAAGCAGTTCGAATTCTTATCTA
TTGGACTGGGAGGCAAAATCCACTGTGCGCTCACCAAGAGAGATCTGCCA
CTCAACACCGTCGCCGTCCAGCAGCACCTCAACAGCAAAAAGCTCAAGAA
AGAGAGAGAGTGGTGAGTCTACCCGTTGACGAGATCTCTACATGTGTACC
GTTTCTGGGTGCCTGATGGCGTGTTGATTGCGGCTGTAGCAGCTCGAGAT
GATGGGTTTATGGTCGCTCAGTGGCTGGGTGACCAGCAAATCAAATTCTC
CCTGTACTCGAGATATTATGAAGTCTCTTCATGCATCAACACACGTAAGA
GTACATAACAGACATACATACAGACATACATACAGACATACAGACATACA
TATATGAGCAGGCTTATACGGCTACCGCTCCTGTGCTGCACGTGATGTTA
TCTCCAATGAGCCTAAATACACCAGTGAAAGGAAACAGTGTGCCTCCTTT
GGAATCTCCGAAGTCAGGTACCGCGTGCCGAGCGTACTAGCCTCGTCGAG
AGACACACCACCCTTTAGGATTGGCTGTTTCAGGGCGGCAGAGTCTCCCT
TTATTGCCATATTGCCATACTCTGTAACAAGGAGCCGATAGGGGGATGTG
AATAAGCGAAGAAAAGGGGAAGGGGCCACGGGAAGTGGCGAGGGCAGTGA
CGGCAGCATGTAATAACATGCAACATGTAGCCGCCCACGCCTCCGTACTC
CGTACAACAATACCTCTACAACAAACACCTCCTCGCAGCCACCTTCTTCT
ACAAAGTCGTTTAACTCCATCATTTTGCCAAGAGTCCAGAGTGTTGGTGT
ACCGGCTTTCACGAAAGTTGCGGAGCCTGGTGGTATTTATGAACTACTAC
CTACATATGGTACTTTTACAACGTGGACTTGCTTTTTAGTCATTGAACCT
CTCGGCGCTTGCCCTCTCTGGCCCACACACCCTGTGCGTCTCCGCATTCC
CACCCCAACAGGTACAATGCCGACTTCAGCGAGTACGAACCGTTGATCGT
TGCCCACAAGACGAATCCGAAGCTGCTGTTCTGCACGCTGACGCGCAAGG
AGCTCAACCGTATCCCCAAGCAAGTGGAGGCGCACGTCAGCGGCAAACGG
TTCCGCAACAGAAAGGCGGAGATGGAAGGCTTGAAGCAGGCGCAGAGGCA
ACCGATGAAGGAGGAAAGCGAGGAGGAGGAGGAGGAGGATGAGGAAGAAG
AAGGAGAAGAGGACAACGCGGATTTCTGGGTGAGATAATGAAGCGCCTTT
GAAGCGATGGGTCGTCCGAGCGGGCGAAATACTGTACCCCCTTGTTGTGC
AATCGCCGTTCGATTGAGTTAGTCGTTGACCAAGCCTACACCTTTTTGGC
ATACTTTTTCATGTCGCAAGATCAATGTGTGCCTGTCTAGACAGTGGGTC
GATGGTGACGATGGATCTGATGGGGAAACAGCAGTAGCCCACGGTACCAC
GGTAGCCTCTCTGAATCCAGGCAGGCTACTGCTTGTACTGGTGCGTTTTT
CGAGTAGAGACCGCGGCTCTTGACTTGTTATTTCCGCTGCAACCATTGCG
CCGGTTGGGTCGAACCCTCGCCTCAGCATGTTGTTCGTGCTTTTGTTGGT
TAATTGTTGTGGTGAATCGACGACAGGTGCCGACCGGTGGAGCCGAAGTG
GAAGCTATGGACGAAGTCGGCGATAAATCTGACCCGGAACAAGAGGAGGA
GGAGGCAGAAGAGAGAAAGGGGGCTGCAGGGGGGCTTGCACCACGAGGGG
GCAAGAGCAAGGCGCGAGGCGTCAACAAAGCAGGCGCACAAACAGAGAAA
ACTGGCGAGGGCAGTGGGAAAGGCGACAAGACCAGAAAGTCGTTGAAAGG
AAAGCGGAAGGAGGACGGAGACGGCGAGCAGGAGAACGGCGCATCTGGAG
CGAATGGGACCAAGGGCAAAGCCGGAAAGAAGGGGGGCGCAAAAAAAAGC
AAGCAACAGGCGGGGGGGAAAGCGGGCAAGCTGGCGACAAAGAGCGGAAA
ACCGGGCCCCTTGTCGGATGATACGCCAGCGGCCTCGAACACGGTTGCGA
AGGATGCGGCCACCCCCACCGCGTCGCCCTCGCCGAGCCCTAAGGTGAAG
AACAAAGCGAAAAGCCCCAAGAAGAAGGCCAAGGGGGGAGAAACGCCGGA
AGGGAAAAAGGATGCTGGAGAAGCGAGCCTGGTGGAGGCGAAGTCAGCAG
CCAAGCGGAAACACAAGGTGGGGTGGGCGTTGGTGACGAGCGAGAGACCG
CTGTTGGGGAGTACAATGTACGGTGGCATGCGTCATTTTCTTGGTGTGTT
CTCGGACGTCTTGATTCCAGCAGCAGTCTTTTTTGCAGCTATAAATAGCT
GAGAGGCCCCGGCAGAGGTCTGCGGGCTGACAAGCGAGAGGCTGCTGTTA
GAGGGTGAAATGCACGATGCCGTCAATTGCTTGGTAGGTTCTCGGGCGTC
TTCATTCCAACAGTCTTGTCTGCATTTTTGAAGCGCTGACGCCGGAGCAA
CGCTGCCTGCAACCACACACCCTATATGCCTACGCCCGCACAGGTATCGG
AAGAGCCTGCATCCAATGGCAAGAAAAAGCGAAAAGCCTGATTGACACCA
TTGGCGAGGGTTTTGTTGTACGGGCCGGCCGCAAAACCGACAGCTGTCCC
AACCTAGTGCAGAACCTATGATCGCTTGGCTGTTGAGTTGGATGCATTGA
CTCTGAATCGTGGCAACGAGCAGGTAGTGTTTCAAGGTCTCGCGGTTGTC
TAAGGGGGGCCAGCACTGGCGTTTTATGGAGAATATGTGCCAGGTTGACG
TTTGCAAATGAGGGTTCGTGCACCATACTGTATCGTAGTGGTCCGAAGGG
GGGGAGCTGTAATATGGTGAGTTATAAATTCAGCTTGCGGCTGTTTTTTT
CGGTGTTACCGGGTGTTGTCCCAATTTGTGTTAATTGTTTTATAACTCCC
TTTCGCGGCTTGTGCTTGCACGATTGTTCGCGACTGGATAGTTCGCACCT
GCCAACCACATAGACTTTGGTAAACTCAAATAGACGTCACGCCTCTGAAG
AGTTTCCACAATAATCCATCTGGCTTTCTGTTGTGAGATTTAGAAGTGCG
CAAACCCGTGGCCCCGAACGCCTTCAGGTCATCCATATGTATGTAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig160:17294..20540+

>mRNA_L-elsbetiae_contig160.4144.1 ID=mRNA_L-elsbetiae_contig160.4144.1|Name=mRNA_L-elsbetiae_contig160.4144.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2238bp|location=Sequence derived from alignment at L-elsbetiae_contig160:17294..20540+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACGAAGGTAAAGACCCCGCTGCAGCAGATGCCGCGGATGATTC
GAAGCCTGTCCATGTGATGGAGCTGCTGAAGCAGTTCGAATTCTTATCTA
TTGGACTGGGAGGCAAAATCCACTGTGCGCTCACCAAGAGAGATCTGCCA
CTCAACACCGTCGCCGTCCAGCAGCACCTCAACAGCAAAAAGCTCAAGAA
AGAGAGAGAGTGATGGCGAACGAAGGTAAAGACCCCGCTGCAGCAGATGC
CGCGGATGATTCGAAGCCTGTCCATGTGATGGAGCTGCTGAAGCAGTTCG
AATTCTTATCTATTGGACTGGGAGGCAAAATCCACTGTGCGCTCACCAAG
AGAGATCTGCCACTCAACACCGTCGCCGTCCAGCAGCACCTCAACAGCAA
AAAGCTCAAGAAAGAGAGAGAGTGGTACAATGCCGACTTCAGCGAGTACG
AACCGTTGATCGTTGCCCACAAGACGAATCCGAAGCTGCTGTTCTGCACG
CTGACGCGCAAGGAGCTCAACCGTATCCCCAAGCAAGTGGAGGCGCACGT
CAGCGGCAAACGGTTCCGCAACAGAAAGGCGGAGATGGAAGGCTTGAAGC
AGGCGCAGAGGCAACCGATGAAGGAGGAAAGCGAGGAGGAGGAGGAGGAG
GATGAGGAAGAAGAAGGAGAAGAGGACAACGCGGATTTCTGGGTACAATG
CCGACTTCAGCGAGTACGAACCGTTGATCGTTGCCCACAAGACGAATCCG
AAGCTGCTGTTCTGCACGCTGACGCGCAAGGAGCTCAACCGTATCCCCAA
GCAAGTGGAGGCGCACGTCAGCGGCAAACGGTTCCGCAACAGAAAGGCGG
AGATGGAAGGCTTGAAGCAGGCGCAGAGGCAACCGATGAAGGAGGAAAGC
GAGGAGGAGGAGGAGGAGGATGAGGAAGAAGAAGGAGAAGAGGACAACGC
GGATTTCTGGGTGCCGACCGGTGGAGCCGAAGTGGAAGCTATGGACGAAG
TCGGCGATAAATCTGACCCGGAACAAGAGGAGGAGGAGGCAGAAGAGAGA
AAGGGGGCTGCAGGGGGGCTTGCACCACGAGGGGGCAAGAGCAAGGCGCG
AGGCGTCAACAAAGCAGGCGCACAAACAGAGAAAACTGGCGAGGGCAGTG
GGAAAGGCGACAAGACCAGAAAGTCGTTGAAAGGAAAGCGGAAGGAGGAC
GGAGACGGCGAGCAGGAGAACGGCGCATCTGGAGCGAATGGGACCAAGGG
CAAAGCCGGAAAGAAGGGGGGCGCAAAAAAAAGCAAGCAACAGGCGGGGG
GGAAAGCGGGCAAGCTGGCGACAAAGAGCGGAAAACCGGGCCCCTTGTCG
GATGATACGCCAGCGGCCTCGAACACGGTTGCGAAGGATGCGGCCACCCC
CACCGCGTCGCCCTCGCCGAGCCCTAAGGTGAAGAACAAAGCGAAAAGCC
CCAAGAAGAAGGCCAAGGGGGGAGAAACGCCGGAAGGGAAAAAGGATGCT
GGAGAAGCGAGCCTGGTGGAGGCGAAGTCAGCAGCCAAGCGGAAACACAA
GGTGCCGACCGGTGGAGCCGAAGTGGAAGCTATGGACGAAGTCGGCGATA
AATCTGACCCGGAACAAGAGGAGGAGGAGGCAGAAGAGAGAAAGGGGGCT
GCAGGGGGGCTTGCACCACGAGGGGGCAAGAGCAAGGCGCGAGGCGTCAA
CAAAGCAGGCGCACAAACAGAGAAAACTGGCGAGGGCAGTGGGAAAGGCG
ACAAGACCAGAAAGTCGTTGAAAGGAAAGCGGAAGGAGGACGGAGACGGC
GAGCAGGAGAACGGCGCATCTGGAGCGAATGGGACCAAGGGCAAAGCCGG
AAAGAAGGGGGGCGCAAAAAAAAGCAAGCAACAGGCGGGGGGGAAAGCGG
GCAAGCTGGCGACAAAGAGCGGAAAACCGGGCCCCTTGTCGGATGATACG
CCAGCGGCCTCGAACACGGTTGCGAAGGATGCGGCCACCCCCACCGCGTC
GCCCTCGCCGAGCCCTAAGGTGAAGAACAAAGCGAAAAGCCCCAAGAAGA
AGGCCAAGGGGGGAGAAACGCCGGAAGGGAAAAAGGATGCTGGAGAAGCG
AGCCTGGTGGAGGCGAAGTCAGCAGCCAAGCGGAAACACAAGGTATCGGA
AGAGCCTGCATCCAATGGCAAGAAAAAGCGAAAAGCCTGAGTATCGGAAG
AGCCTGCATCCAATGGCAAGAAAAAGCGAAAAGCCTGA
back to top