mRNA_L-elsbetiae_contig16.4136.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16.4136.1 vs. uniprot
Match: D7FM59_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM59_ECTSI) HSP 1 Score: 1184 bits (3064), Expect = 0.000e+0 Identity = 764/1444 (52.91%), Postives = 891/1444 (61.70%), Query Frame = 1
Query: 1339 PFLDDPADPVMIAHRCAMERPQSPRRDYLMRCAEKQLLPVPVINRALKLDPSTDLRKEPFSGMDG---VRRGL--EADQEDQIAKLTGAEGKRVAIHRHGSIVLRHYYLGATRVKCLESAIATVPVALREVELVDSGLDDLASEALLGVLLGRAGTISKLNLARNRMGMKGAIALARYIAHKDCDLRMLRLDGNKAGDQPVTVVLKALVRHQPPVSHLGLSDNRLTLKTMQGCAGPLLTGGLSVLSLDLGWNHLNQQAVEEFSDALAWNKTVTMVNLEFNNSGDGVHALAEALQNNQTLTRLDLTANQASIQRTARENATPGECSLSSQDDGHVRWSGAVALSEVVATSAGLRSLVLRENNIGTAAGLQMGVALARKPGAPCLVDIQGCTCFSDKTDVWSGINARARAARAARLAAVRNRNQAIRARKKMKANKKNKQAANNPGEAKKPGA---SSTRRKKAPPAAQRTQAPLPPPTRPDEQLYWLDLTVDRKWDLRLNRPFDRAVGSEILRVFNFSSGARLVGNLRVPGGKQRTMVFVRREGLLLKEERAAIATAAVSSSLRGRQVGSLP----PAIAFTTSQNSKQTSKILDPWGTTAGNKKAGGRTAPQREADHPLARWLNEWNECRVRGWEGDVPPVAGLSSREETVRLLAQLPKEGTLQLSYTAGKLLCPKQSLLPDAFPEEIPGIPHSTSAANTPAQKTATNR----------------GGVESGCTPESPSTAEAEGGRRRDSGSEELGRCNTADGCETASGGGSGGG------------------------------FGGLVYMLRSLGSPIQMCDMVECLSRRTWLTDQQLCAVSAAFSDEPKMSEPRCRVFLALLPNIRHNCLKTLGEHLSRRVKRLQGIPPPDLSVGAPRK----------------------GGQARRWQRGAPALKTEEERQAE-EDEEARRRARVLDDGWTEGPLFQNVDDDAVGVLAGCSASTFRRRAAVFIVVSALGLEGYLTPLEAARLGGVVKGA-AYFNPFAPQGHYNLDMKMPGDRDVFRALLGLDKVNRAHVGMHGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRARAKLLKKS--KGXXXXXXXXXXXXXXXXXXNSAASKQKQPPSAQTIDKASPEARAESASXXXXXXXXXXXXXXXXXXXXXXXAKKKKTQPQRSTTKP--TGTPG-LIKRYPTMPTVSRISFDFLHYIRPPTQATPVPQESFEQLLHFLTSWR-CRRTVRCHGGDADSGPKYDNVKDGDVNA-------------GNGDGGSKPVPRAARDGLAVNLLRHFCHVFYFDCNQVVDLLQIFPGEDDTLEREPTVVQGQPAPSSKEAVQRAEEDKGSSCREEAFIAVFCRITDESNLDLCLGMLTNREVSRCEARLGPVALFMPTKPEGDYKLDLRAFADRQIVTLLL 5367
PFLDDP DPVMIAHR M+RP SPRRDYLMRCAE+QLLPVPVINRAL++DP + +P +G G RG EA++ + A++T +E +A +G VELVDSGLD ASE LLGVLL RAGTI KL+L+ NR+G++GA L+R IAHK C LR L+LDGNKAGD V VLKAL R+QPPV+HLGLSDN LTLK MQ CAGPLLTGGLS+LSLDLGWNHLNQQA+EE SDALAWNK+VT +NLEFNNSG+GVHALA TAN HVRW G IGTAAGLQM +ALA KPG PCLVDI+GCTCFSDKTDVWSG+ AR AARAARLA VR RN AIRARKK++ +K Q+++ G KK GA S+ TRPDE LYWLDLTVDRKWDLRLNRPFDRAVG E+LR FNFSSG L G LRVPGG R + F RRE L + AT SS RGR+ G + PA+ K S + G G KAGG TA QREADHPLA+WLNEW E + RGWEGDVPPV GL+ REE +LLAQLP EGT++L+Y AG LL K+SLL A PG +T+ + +A N+ GG+ + +S A EGGR R C ++GGG+G G F ++YMLRSLGSPIQMC+MVECLSRRTWL+D QL ++ AFSDEP+MSEPRCRVFLALLPNIRHN LK LG+HLS+RVKRLQGIPPPD S GAP++ G RW+R A + +EER+ + E EEA RRA++LDDGW GP + D VGVLAGCSASTFRR GLEG LTPLE RLG VV+G+ AYFNPFAPQGHYNLDM +P DR+VFRALLGLDKVNRAHVGM GLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRAR KL K+ K XXXXXXXXXXXXX N AA+ + + +A+T + AR + A + + + R + KP +GTPG +KR+PTMPT SRISFDFLHYIRP AT P+ESF+QL+ FL++W C +G D + K + DVN+ G+ DGG+ + + L VN LR+ CHVFYF+CNQVVDLL++FPGEDD E EP G A + KEA GSSCREE F+AV CRITDESNLDLCLG+LT+REVSRCEARLGPVALFMPT+P+G+YKLDLRAF DRQI TLLL
Sbjct: 2 PFLDDPHDPVMIAHRM-MKRPASPRRDYLMRCAERQLLPVPVINRALRIDPQPAMA-DPMTGDAGEVHTARGKPGEAEETNIGAEVTLSECTDIAFPINGG--------------------EEDDTKKANVELVDSGLDGPASETLLGVLLERAGTIIKLDLSGNRIGLQGASGLSRLIAHKRCALRSLKLDGNKAGDHAVITVLKALARYQPPVTHLGLSDNGLTLKVMQECAGPLLTGGLSLLSLDLGWNHLNQQAIEEVSDALAWNKSVTKMNLEFNNSGEGVHALAXXXXXXXXXXXXXXTAN-------------------------HVRWEGXXXXXXXXXXXXXXXXXXXXXXPIGTAAGLQMSIALAEKPGDPCLVDIKGCTCFSDKTDVWSGMKARKGAARAARLALVRARNAAIRARKKLREKEKRDQSSSRTG-GKKSGAELDSTGAXXXXXXXXXXXXXXXXXXTRPDEHLYWLDLTVDRKWDLRLNRPFDRAVGREVLRTFNFSSGGSLAGILRVPGGAPRQVTFRRREKL---QPAPGDATGNGLSSRRGRKSGVVGDGRGPAVG-----RGKAISNVAVSKGRXKG--KAGGGTARQREADHPLAKWLNEWTERKERGWEGDVPPVQGLTVREEVNKLLAQLPAEGTIKLAYKAGTLLSAKRSLLVMA-----PGPVKTTNTFEQQRRGSAANKVLLLPGSGSDGRYSTGGGLVAQGIEDSRPVA-TEGGRGR---------------CTNSAGGGTGLGDEERRTQGMPATAIETKTTTITLCRAADRAFESVIYMLRSLGSPIQMCEMVECLSRRTWLSDNQLYSLLDAFSDEPRMSEPRCRVFLALLPNIRHNTLKALGQHLSQRVKRLQGIPPPDFSAGAPKRVTAGAXXXXXXXXXXTQREDTGGPPLMRWERDAAMARMDEERKEQAEAEEAARRAKILDDGWKGGPFLDGLGSDFVGVLAGCSASTFRR----------FGLEGRLTPLEEERLGSVVEGSSAYFNPFAPQGHYNLDMTLPSDREVFRALLGLDKVNRAHVGMKGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRARTKLNKRGAKKTXXXXXXXXXXXXXAKKMTNKAAAGKTKAGNAKTSSRGINNARGAKGT-----------------------APQTEKRLPRESVKPAGSGTPGGSVKRFPTMPTASRISFDFLHYIRPSPGATSTPKESFDQLVQFLSNWMSCGNANGGNGADDNDNDKVNGGSAVDVNSSNXXXXXXXXXXDGHDDGGAV---KRKKGRLFVNFLRNLCHVFYFNCNQVVDLLRVFPGEDD--EHEPAKENGNEAGTGKEA--------GSSCREEVFVAVVCRITDESNLDLCLGVLTDREVSRCEARLGPVALFMPTQPDGEYKLDLRAFGDRQIATLLL 1320
BLAST of mRNA_L-elsbetiae_contig16.4136.1 vs. uniprot
Match: A0A6H5L1G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G1_9PHAE) HSP 1 Score: 392 bits (1007), Expect = 1.240e-115 Identity = 265/634 (41.80%), Postives = 311/634 (49.05%), Query Frame = 1
Query: 3580 FGGLVYMLRSLGSPIQMCDMVECLSRRTWLTDQQLCAVSAAFSDEPKMSEPRCRVFLALLPNIRHNCLKTLGEHLSRRVKRLQGIPPPDLSVGAPRK----------------------GGQARRWQRGAPALKTEEERQAE-EDEEARRRARVLDDGWTEGPLFQNVDDDAVGVLAGCSASTFRRRAAVFIVVSALGLEGYLTPLEAARLGGVVKGA-AYFNPFAPQGHYNLDMKMPGDRDVFRALLGLDKVNRAHVGMHGLLDPSQHGNSHHLRNFRLGGGRPVKFGLLSRRARAKLLKKSKGXXXXXXXXXXXXXXXXXXNSAASKQKQPPSAQTIDKASPEARAESASXXXXXXXXXXXXXXXXXXXXXXXAKKKKTQPQRSTTKPTGTPGLIKRYP---TMPTVSRISFDFLHYIRPPTQATPVPQESFEQLLHFLTSWR-CRRTVRCHGGDADSGPKYDNVKDGDVNAGNGDGGSKPVPRAARDG----------LAVNLLRHFCHVFYFDCNQVVDLLQIFPGEDDTLEREPTVVQGQPAPSSKEAVQRAEEDKGSSCREEAFIAVFCRITDESNLDLCLGMLTNREVSRCEARLGPVALFMPTKPEGDYKLDLRAFADRQIVTLLL 5367
F +++MLRSLGSPIQ P+MSEPRCRVFLALLPNIRHN LK LGEHLS+RVKRLQGIPPPD S AP++ G RW+R A + +EER+ + E EEA RRA++LDDGW GP + +D VGVLAGC+ASTFRR GLE LTPLE RLG VV+G+ AYFNPFAPQGHYNLDM +P DR+VFRALLGLDK ++ GN A+ + + AR E +P KR P P SRISFDFLHYIRP AT P+E F++L+ FL+ W C +G + DVNA D + VN LR+ CHVFYF CNQVVDLL++FPGEDD E E +G A + EA GSSCREE F+AV CRITDESNLD+CLG LT+REVSRCEARLGPVALFMPT+P+G+YKLDLRAF DRQI TLLL
Sbjct: 104 FESVIFMLRSLGSPIQ-----------------------------PRMSEPRCRVFLALLPNIRHNTLKALGEHLSQRVKRLQGIPPPDFSAVAPKRVTAGAAXXXXXXXXXXXREGTGGPPLMRWERDAAMARMDEERKEQAEAEEAARRAKILDDGWKGGPFLDGLGNDIVGVLAGCAASTFRR----------FGLEDCLTPLEEERLGSVVEGSSAYFNPFAPQGHYNLDMTLPSDREVFRALLGLDKAKAKKTTSKAPAGKTKTGN----------------------------------------------------------------AKPSSRDNKNARGEKGK----------------------------------------SPQTEKRLPLESVKPAASRISFDFLHYIRPSPGATSTPKECFDELVQFLSKWMSCGNANGGNGXXXXXXXXVNGASAIDVNAXXXXXXXXXXXXXXHDDSGAVKRKKGRVIVNFLRNLCHVFYFSCNQVVDLLRVFPGEDD--EHESGKEEGNEAGTGNEA--------GSSCREEVFVAVVCRITDESNLDICLGALTDREVSRCEARLGPVALFMPTQPDGEYKLDLRAFGDRQIATLLL 584
BLAST of mRNA_L-elsbetiae_contig16.4136.1 vs. uniprot
Match: A0A6H5L754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L754_9PHAE) HSP 1 Score: 283 bits (723), Expect = 5.310e-81 Identity = 221/563 (39.25%), Postives = 257/563 (45.65%), Query Frame = 1
Query: 1390 MERPQSPRRDYLMRCAEKQLLPVPVINRALKLDPSTDLRKEPFSGMDGVRRGLEADQEDQIAKLTGAEGKRVAIHRHGSIVLRHYYLGATRVKCLESAIATVPVALREVELVDSGLDDLASEALLGVLLGRAGTISKLNLARNRMGMKGAIALARYIAHK---------------------DCDLRMLRLDGNKAGDQPVTVVLKALVRHQPPVSHLGLSDNRLTLKTMQGCAGPLLTGGLSVLSLDLGWNHLNQQAVEEFSDALAWNKTVTMVNLEFNNSGDGVHALAEALQNNQTLTRLDLTANQASIQRTARENATPGECSLSSQDDGHVRWSGAVALSEVVATSAGLRSLVLRENNIGTAAGLQMGVALARKPGAPCLVDIQGCTCFSDKTDVWSGINARARAARAARLAAVRNRNQAIRARKKMKANKKNKQAANNPGEAKKPGASSTRRKKAPPAAQRTQAPLPPPTRPDEQLYWLDLTVDRKWDLRLNRPFDRAVGSEILRVFNFSSGARLVGNLRVPGGKQRTMVFVRREGLLLKEERAAIATAAVSSSLRGRQV 3015
M+RP SPRRDYLMRCAE+QLLPVPVINRAL++DP T + +P +G ++ G G+ E + DSGLD ASE LLGVLL RAGTISKL+L+ NR+G KGA L+R IAHK +C LR L+LDGNKAGD+ V VLKAL R+QPPVSHLGLSDN LTLK MQ NN+TLT ++LTANQ VRW GAVALSE + + +R+LVLR+N IGTAAGLQM +ALA K G PCLVDI KK K Q + GAS K AP TRPDE L+WLDLTVDRKWDLRLNRPFDRAVG E+LR FNFS+G L G LRV GG R + F RRE L + + AT SS RGR+V
Sbjct: 2 MKRPASPRRDYLMRCAERQLLPVPVINRALRIDPQTAMA-DPMTG-----------DAREVHTTGGKTGEA-----------------------------------EETNIGDSGLDGPASETLLGVLLERAGTISKLDLSGNRIGPKGASGLSRLIAHKREFVWLARVFFTLTLSMSDSCECALRSLKLDGNKAGDRAVMTVLKALARYQPPVSHLGLSDNGLTLKVMQ---------------------------------------------------------------NNKTLTNVNLTANQ-------------------------VRWEGAVALSEALVANTTIRNLVLRDNPIGTAAGLQMSIALAEKHGDPCLVDI-----------------------------------------KKTSGKKSGAQLDST-------GAS----KGAPQPXXXXXXXXXXXTRPDEHLFWLDLTVDRKWDLRLNRPFDRAVGREVLRTFNFSTGGSLAGILRVSGGAPRQVTFRRREKL---QPASGDATRTGLSSGRGRKV 374
BLAST of mRNA_L-elsbetiae_contig16.4136.1 vs. uniprot
Match: A0A5D6XWV5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWV5_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 8.670e-9 Identity = 55/187 (29.41%), Postives = 92/187 (49.20%), Query Frame = 1
Query: 1639 HYYLGATRVKCLESAIATVPVALREVELVDSGLDDLASEALLG-VLLGRAGTISKLNLARNRMGMKGAIALARYIAHKDCDLRMLRLDGNKAGDQPVTVVLKALVRHQPPVSHLGLSDNRLTLKTMQGCAGPLLTGGLSVLSLDLGWNHLNQQAVEEFSDALAWNKTVTMVNLEFNNSGDGVHALAE 2196
+YY G R + A+ +PV + + L + G+ S A+LG V L +S LN + NR+G KG + L + LR L L N GDQ V ++++ L+ ++ + HL L N++ G LL + SL+L WN++ + + + + N T+T ++L N G+ +A AE
Sbjct: 327 NYYFGDQRAEAFGDALQLLPVHVTNLSLKNVGISGGGSSAILGGVALHH---LSALNFSENRIGAKGTLKLFTSLRDPHAHLRTLDLGNNHLGDQAVKLLIECLL-NRCTLEHLDLRRNQIFHAAR--AVGELLRITTPLKSLNLSWNNIRGEPAQHLARCMMENLTLTHLDLSDNTLGNNGNADAE 507
BLAST of mRNA_L-elsbetiae_contig16.4136.1 vs. uniprot
Match: A0A482ST86_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482ST86_9ARCH) HSP 1 Score: 66.2 bits (160), Expect = 9.180e-7 Identity = 58/218 (26.61%), Postives = 102/218 (46.79%), Query Frame = 1
Query: 1633 LRHYYLGATRVKCLESAIATVPVALREVELVDSGLDDLASEALLGVLLGRAGTISKLNLARNRMGMKGAIALARYIAHKDCDLRMLRLDGNKAGDQPVTVVLKALVRHQPPVSHLGLSDNRLTLKTMQGCAGPLLTGGLSVLS-----------LDLGWNHLNQQAVEEFSDALAWNKTVTMVNLEFNNSGDGVHA---LAEALQNNQTLTRLDLTAN 2244
L HY +G + L + +P L + L D+ L D + + L+ ++ ++ +L+L+RN++ + + ALA Y++ DC L+ L L D ++ L ++ + L LS N L + TGG ++ L LGWN + + + A+A+N T+T L+ NN+G G A L +A+ N+TL L ++ N
Sbjct: 357 LSHYSMGDKMGRVLAECLGDLP-CLESINLNDNNLTDDSLQYLIEAIISIP-SVHELDLSRNKIDGQSSEALAGYVSRADCPLKKLVLQVADVDDGECDHFVQCLCSNEQ-LLELDLSSNLLGTTETKAIEEGGRTGGEALADFIQSKSCRLQVLKLGWNSIRGNSAASLAKAVAFNNTITF--LDLNNNGLGYQAGELLGDAIMENRTLRTLLVSGN 569 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16.4136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16.4136.1 >prot_L-elsbetiae_contig16.4136.1 ID=prot_L-elsbetiae_contig16.4136.1|Name=mRNA_L-elsbetiae_contig16.4136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1991bp MQQGSVQQQRQCQGGSESQKHDSPAEIHDDDSMLSEASPLAAPGCPRTSTback to top mRNA from alignment at L-elsbetiae_contig16:37662..56465- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16.4136.1 ID=mRNA_L-elsbetiae_contig16.4136.1|Name=mRNA_L-elsbetiae_contig16.4136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=18804bp|location=Sequence derived from alignment at L-elsbetiae_contig16:37662..56465- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16:37662..56465- >mRNA_L-elsbetiae_contig16.4136.1 ID=mRNA_L-elsbetiae_contig16.4136.1|Name=mRNA_L-elsbetiae_contig16.4136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=11946bp|location=Sequence derived from alignment at L-elsbetiae_contig16:37662..56465- (Laminarionema elsbetiae ELsaHSoW15)back to top |