mRNA_L-elsbetiae_contig15998.4131.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15998.4131.1
Unique NamemRNA_L-elsbetiae_contig15998.4131.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15998.4131.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15998contigL-elsbetiae_contig15998:215..1256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1042
Cds size537
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.6573107-UTR-L-elsbetiae_contig15998:214..7191622815658.6573107-UTR-L-elsbetiae_contig15998:214..719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15998 215..719 +
1691683019.8289127-UTR-L-elsbetiae_contig15998:214..7191691683019.8289127-UTR-L-elsbetiae_contig15998:214..719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15998 215..719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.6803749-CDS-L-elsbetiae_contig15998:719..12561622815658.6803749-CDS-L-elsbetiae_contig15998:719..1256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15998 720..1256 +
1691683019.840406-CDS-L-elsbetiae_contig15998:719..12561691683019.840406-CDS-L-elsbetiae_contig15998:719..1256Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15998 720..1256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15998.4131.1prot_L-elsbetiae_contig15998.4131.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15998 720..1256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15998.4131.1

>prot_L-elsbetiae_contig15998.4131.1 ID=prot_L-elsbetiae_contig15998.4131.1|Name=mRNA_L-elsbetiae_contig15998.4131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MHVFLFFFGGGVFHLSRKRKQPNTESRKGVDPQRHVETDAETAMNASPTT
HPANHLHTTKTHDLSLQQRQLGSSVPAAEGGKEAAKNTSIAVVPATKRAG
ATGQFLPVPCAGRWSGRTLFALLLWAKFRQVQSTYIPSGGSCRPPTKISI
SNYVDAALCDAAQPRVSKFTPPPPPQAY*
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mRNA from alignment at L-elsbetiae_contig15998:215..1256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15998.4131.1 ID=mRNA_L-elsbetiae_contig15998.4131.1|Name=mRNA_L-elsbetiae_contig15998.4131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1042bp|location=Sequence derived from alignment at L-elsbetiae_contig15998:215..1256+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCAGCACTCGCGCACGTATTGGTCTCCCCGCTTCGGTTTCCATTG
AATTTCCCCCGCCCGCATATACCAGGATACAACAGCAGTATGCCCTTTCC
GCGAGTTCAGTCGACCGACCGCTCGCTTCTCTTTTCGTGCGAGCGGGATG
GAAGACACACACAGACAAACAGACGCCCGAATAAACCCGCAACACAACAC
TGGCATTATTGTTTGAGAAATCAAACAGTACCTAGCAGTGGGGGGACCAG
GCGACCAGCAACACACACACAACACACCCACTTACCCACCCGCACAACGA
ATATTAGTAAACTGGGAACACGCTGACGACAAGAGCCAAAGAAAGAGCGG
AGACAACAACTAAAATACCCGAGCGCACTACGGCATGAATATCACACCAG
CACAAACAAGACACAAAAAATAACTACTTCGACGAAGCACGCCGCTCCAA
CATTAATGACAGCAAACAGCAACAAGAGCAAGAAGCCACCAGACCCCAAG
TCAACATGCATGTTTTTTTGTTTTTTTTTGGGGGGGGAGTCTTCCACCTC
TCGAGAAAGAGGAAGCAGCCCAACACAGAAAGTCGCAAGGGGGTCGATCC
TCAACGGCACGTGGAGACAGACGCTGAAACAGCAATGAATGCATCCCCTA
CTACGCACCCCGCTAACCACCTACATACAACCAAAACACACGACCTTTCT
CTCCAACAGAGACAACTCGGGAGCAGCGTTCCTGCAGCAGAAGGAGGGAA
GGAAGCGGCGAAAAACACAAGCATCGCCGTGGTTCCAGCAACCAAACGCG
CAGGAGCTACTGGACAATTTCTGCCTGTCCCCTGCGCGGGTCGGTGGTCA
GGAAGAACACTATTCGCTCTACTGCTTTGGGCGAAATTTAGGCAGGTACA
GAGTACCTATATACCGAGTGGCGGTTCGTGCCGCCCGCCGACCAAGATAA
GCATAAGCAATTACGTGGATGCTGCTCTGTGCGATGCAGCACAGCCACGA
GTCTCAAAATTCACCCCCCCCCCCCCCCCCCAAGCTTACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15998:215..1256+

>mRNA_L-elsbetiae_contig15998.4131.1 ID=mRNA_L-elsbetiae_contig15998.4131.1|Name=mRNA_L-elsbetiae_contig15998.4131.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig15998:215..1256+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGTTTTTTTGTTTTTTTTTGGGGGGGGAGTCTTCCACCTCTCGAG
AAAGAGGAAGCAGCCCAACACAGAAAGTCGCAAGGGGGTCGATCCTCAAC
GGCACGTGGAGACAGACGCTGAAACAGCAATGAATGCATCCCCTACTACG
CACCCCGCTAACCACCTACATACAACCAAAACACACGACCTTTCTCTCCA
ACAGAGACAACTCGGGAGCAGCGTTCCTGCAGCAGAAGGAGGGAAGGAAG
CGGCGAAAAACACAAGCATCGCCGTGGTTCCAGCAACCAAACGCGCAGGA
GCTACTGGACAATTTCTGCCTGTCCCCTGCGCGGGTCGGTGGTCAGGAAG
AACACTATTCGCTCTACTGCTTTGGGCGAAATTTAGGCAGGTACAGAGTA
CCTATATACCGAGTGGCGGTTCGTGCCGCCCGCCGACCAAGATAAGCATA
AGCAATTACGTGGATGCTGCTCTGTGCGATGCAGCACAGCCACGAGTCTC
AAAATTCACCCCCCCCCCCCCCCCCCAAGCTTACTGAATGCATGTTTTTT
TGTTTTTTTTTGGGGGGGGAGTCTTCCACCTCTCGAGAAAGAGGAAGCAG
CCCAACACAGAAAGTCGCAAGGGGGTCGATCCTCAACGGCACGTGGAGAC
AGACGCTGAAACAGCAATGAATGCATCCCCTACTACGCACCCCGCTAACC
ACCTACATACAACCAAAACACACGACCTTTCTCTCCAACAGAGACAACTC
GGGAGCAGCGTTCCTGCAGCAGAAGGAGGGAAGGAAGCGGCGAAAAACAC
AAGCATCGCCGTGGTTCCAGCAACCAAACGCGCAGGAGCTACTGGACAAT
TTCTGCCTGTCCCCTGCGCGGGTCGGTGGTCAGGAAGAACACTATTCGCT
CTACTGCTTTGGGCGAAATTTAGGCAGGTACAGAGTACCTATATACCGAG
TGGCGGTTCGTGCCGCCCGCCGACCAAGATAAGCATAAGCAATTACGTGG
ATGCTGCTCTGTGCGATGCAGCACAGCCACGAGTCTCAAAATTCACCCCC
CCCCCCCCCCCCCAAGCTTACTGA
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