mRNA_L-elsbetiae_contig15832.4053.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15832.4053.1
Unique NamemRNA_L-elsbetiae_contig15832.4053.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15832.4053.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.900e-41
Identity = 64/119 (53.78%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:  361 RAACGKALHGKQVPGVG-LPLCFACGRPGSRDGCMKKWRHVGSTPLWGDLGVWSSTAVAGDAWVHERDLQADPLQVGECICCRPDCVGTMYDNFKLRHRKEGEGSMLKMVVGQSSPMGR 714
            RA+CGK +HGK+    G L  CFAC RPGSRDGC   W+HV  +  W +LG WS+T   G+ W HERDL  DPL+ GECIC R DCV  +Y  +K R ++E +G++  MV+GQ SPMGR
Sbjct:    6 RASCGKVVHGKEPAAAGELRRCFACDRPGSRDGCSTNWQHVVDSEYWAELGEWSATV--GEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
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BLAST of mRNA_L-elsbetiae_contig15832.4053.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 9.450e-39
Identity = 57/89 (64.04%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:  355 GIRAACGKALHGKQVPGVGLPLCFACGRPGSRDGCMKKWRHVGSTPLWGDLGVWSSTAVAGDAWVHERDLQADPLQVGECICCRPDCVG 621
            G   +CG+A+HGK+ PG GL LCFACGRPGSRDGC  +W+HVG T  W ++G WS  A+ G  W HERDLQ DPL+VGECIC RPDC G
Sbjct:    4 GFLGSCGRAVHGKEAPGGGLGLCFACGRPGSRDGCSSRWKHVGQTTYWAEVGEWS--AMVGQEWPHERDLQGDPLKVGECICTRPDCAG 90
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BLAST of mRNA_L-elsbetiae_contig15832.4053.1 vs. uniprot
Match: D7FTC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-20
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:  376 KALHGKQVPGVGLPLCFACGRPGSRDGCMKKWRHVGSTPLWGDLGVWSSTAVAGDAWVHERDLQADPLQVGECICCRPDCVGTMY 630
            +A+HGK+ PG G  LCFACGRPGSRDGC  +W+HVG    W +LG WS  A+ G+ W HERD             CRP   G ++
Sbjct:    7 RAVHGKEAPGGGPGLCFACGRPGSRDGCSSRWKHVGQGTYWAELGEWS--AIVGEEWPHERDT------------CRPSQSGRVH 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15832.4053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE2.900e-4153.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE39_9PHAE9.450e-3964.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC1_ECTSI1.430e-2048.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15832contigL-elsbetiae_contig15832:1656..2401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_000310.1
Exons1
Model size746
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15832.4053.1prot_L-elsbetiae_contig15832.4053.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15832 2004..2396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.5468855-UTR-L-elsbetiae_contig15832:1655..20031622815650.5468855-UTR-L-elsbetiae_contig15832:1655..2003Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15832 1656..2003 +
1691683014.6853118-UTR-L-elsbetiae_contig15832:1655..20031691683014.6853118-UTR-L-elsbetiae_contig15832:1655..2003Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15832 1656..2003 +
1622815650.5799966-UTR-L-elsbetiae_contig15832:2396..24011622815650.5799966-UTR-L-elsbetiae_contig15832:2396..2401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15832 2397..2401 +
1691683014.70786-UTR-L-elsbetiae_contig15832:2396..24011691683014.70786-UTR-L-elsbetiae_contig15832:2396..2401Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15832 2397..2401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.5664854-CDS-L-elsbetiae_contig15832:2003..23961622815650.5664854-CDS-L-elsbetiae_contig15832:2003..2396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15832 2004..2396 +
1691683014.6969445-CDS-L-elsbetiae_contig15832:2003..23961691683014.6969445-CDS-L-elsbetiae_contig15832:2003..2396Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15832 2004..2396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15832.4053.1

>prot_L-elsbetiae_contig15832.4053.1 ID=prot_L-elsbetiae_contig15832.4053.1|Name=mRNA_L-elsbetiae_contig15832.4053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MGGIRAACGKALHGKQVPGVGLPLCFACGRPGSRDGCMKKWRHVGSTPLW
GDLGVWSSTAVAGDAWVHERDLQADPLQVGECICCRPDCVGTMYDNFKLR
HRKEGEGSMLKMVVGQSSPMGRYPSTGSQV*
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mRNA from alignment at L-elsbetiae_contig15832:1656..2401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15832.4053.1 ID=mRNA_L-elsbetiae_contig15832.4053.1|Name=mRNA_L-elsbetiae_contig15832.4053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=746bp|location=Sequence derived from alignment at L-elsbetiae_contig15832:1656..2401+ (Laminarionema elsbetiae ELsaHSoW15)
TCGTCGCCAGGCACCATCAAGCCCCGGTGAACTATCGTCATACTCATATT
GCAGCTACTCGTGCAAGTTTTCGCCGGTAAAAAGCTTTACCAGCGTCTAC
TCGGTGCTGCCTCGCATCAAGGAGCCGCCAGATGCTGCTGACCAGGCCCG
GCACCCTCAACCGGCTCGATTAGTGGCCAGTGATAACATCTTCGGCTTTC
TCTGGATGTTCTGCGTAGCTTAGATGCTGAGGTTGCTTCAGCTCTGATTT
CGTCTTGGGTCATTCACTGTGGCGTTTGAAATCGGCTGCAGCTGCACACG
GACGTTGAACGTGTTTCCCCCCCAGAACACAGCTTTCACGCTGCTGTTAT
GGGGGGTATTCGCGCCGCCTGTGGGAAAGCATTGCACGGGAAACAAGTGC
CGGGAGTGGGGCTTCCGTTATGCTTTGCCTGTGGCCGCCCCGGGAGTCGT
GATGGATGCATGAAAAAATGGAGGCACGTAGGCAGCACACCACTTTGGGG
AGATCTGGGCGTTTGGTCTTCGACAGCAGTAGCCGGGGACGCGTGGGTTC
ATGAGCGTGACCTCCAAGCAGACCCTTTGCAGGTGGGAGAATGCATCTGC
TGCCGGCCTGACTGCGTAGGTACGATGTACGACAACTTTAAACTGCGCCA
CCGGAAGGAAGGGGAAGGCTCGATGTTGAAGATGGTCGTCGGGCAGTCCT
CGCCGATGGGCCGGTACCCGTCGACGGGCTCCCAGGTATGACTCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15832:1656..2401+

>mRNA_L-elsbetiae_contig15832.4053.1 ID=mRNA_L-elsbetiae_contig15832.4053.1|Name=mRNA_L-elsbetiae_contig15832.4053.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig15832:1656..2401+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGGTATTCGCGCCGCCTGTGGGAAAGCATTGCACGGGAAACAAGT
GCCGGGAGTGGGGCTTCCGTTATGCTTTGCCTGTGGCCGCCCCGGGAGTC
GTGATGGATGCATGAAAAAATGGAGGCACGTAGGCAGCACACCACTTTGG
GGAGATCTGGGCGTTTGGTCTTCGACAGCAGTAGCCGGGGACGCGTGGGT
TCATGAGCGTGACCTCCAAGCAGACCCTTTGCAGGTGGGAGAATGCATCT
GCTGCCGGCCTGACTGCGTAGGTACGATGTACGACAACTTTAAACTGCGC
CACCGGAAGGAAGGGGAAGGCTCGATGTTGAAGATGGTCGTCGGGCAGTC
CTCGCCGATGGGCCGGTACCCGTCGACGGGCTCCCAGGTATGAATGGGGG
GTATTCGCGCCGCCTGTGGGAAAGCATTGCACGGGAAACAAGTGCCGGGA
GTGGGGCTTCCGTTATGCTTTGCCTGTGGCCGCCCCGGGAGTCGTGATGG
ATGCATGAAAAAATGGAGGCACGTAGGCAGCACACCACTTTGGGGAGATC
TGGGCGTTTGGTCTTCGACAGCAGTAGCCGGGGACGCGTGGGTTCATGAG
CGTGACCTCCAAGCAGACCCTTTGCAGGTGGGAGAATGCATCTGCTGCCG
GCCTGACTGCGTAGGTACGATGTACGACAACTTTAAACTGCGCCACCGGA
AGGAAGGGGAAGGCTCGATGTTGAAGATGGTCGTCGGGCAGTCCTCGCCG
ATGGGCCGGTACCCGTCGACGGGCTCCCAGGTATGA
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