mRNA_L-elsbetiae_contig15826.4051.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15826.4051.1
Unique NamemRNA_L-elsbetiae_contig15826.4051.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15826.4051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15826contigL-elsbetiae_contig15826:1943..2372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15826.4051.1prot_L-elsbetiae_contig15826.4051.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15826 1955..2296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.244361-UTR-L-elsbetiae_contig15826:1942..19541622815650.244361-UTR-L-elsbetiae_contig15826:1942..1954Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15826 1943..1954 +
1691683014.4721289-UTR-L-elsbetiae_contig15826:1942..19541691683014.4721289-UTR-L-elsbetiae_contig15826:1942..1954Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15826 1943..1954 +
1622815650.2719734-UTR-L-elsbetiae_contig15826:2296..23721622815650.2719734-UTR-L-elsbetiae_contig15826:2296..2372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15826 2297..2372 +
1691683014.4896948-UTR-L-elsbetiae_contig15826:2296..23721691683014.4896948-UTR-L-elsbetiae_contig15826:2296..2372Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15826 2297..2372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.2603216-CDS-L-elsbetiae_contig15826:1954..22961622815650.2603216-CDS-L-elsbetiae_contig15826:1954..2296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15826 1955..2296 +
1691683014.4810727-CDS-L-elsbetiae_contig15826:1954..22961691683014.4810727-CDS-L-elsbetiae_contig15826:1954..2296Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15826 1955..2296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15826.4051.1

>prot_L-elsbetiae_contig15826.4051.1 ID=prot_L-elsbetiae_contig15826.4051.1|Name=mRNA_L-elsbetiae_contig15826.4051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=114bp
MWDKVWGWVMGGVGLGVRVTVTVRVTEPLSYYFLYYRQELQEFFFAQTVP
ILSGSENNSSVPQTAAVAVAAPRHEATQNDRARHLLRVEAPCLVGYCSEK
VRQGVIIKKHCFQ*
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mRNA from alignment at L-elsbetiae_contig15826:1943..2372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15826.4051.1 ID=mRNA_L-elsbetiae_contig15826.4051.1|Name=mRNA_L-elsbetiae_contig15826.4051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=430bp|location=Sequence derived from alignment at L-elsbetiae_contig15826:1943..2372+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGAAGAAATAATGTGGGATAAAGTATGGGGATGGGTAATGGGGGGGGT
CGGCTTGGGGGTTAGGGTTACGGTCACGGTTAGGGTTACGGAGCCCCTGT
CGTACTATTTCCTATATTATAGACAGGAATTGCAGGAATTCTTCTTCGCC
CAGACGGTACCCATCTTATCCGGTAGCGAAAATAACAGTTCGGTTCCACA
GACGGCGGCGGTGGCGGTGGCGGCGCCAAGACACGAGGCAACACAGAACG
ACCGTGCGAGGCATTTGCTTCGTGTAGAGGCGCCGTGTCTCGTCGGGTAT
TGTAGCGAGAAAGTCCGACAAGGCGTCATCATAAAAAAGCATTGTTTTCA
GTAAATGACAGCTGGTGTATATGTACTCGCTCTACTCGGCGGCGACAACA
TGTGCGCATCACCAACCGGAAGAGGTTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15826:1943..2372+

>mRNA_L-elsbetiae_contig15826.4051.1 ID=mRNA_L-elsbetiae_contig15826.4051.1|Name=mRNA_L-elsbetiae_contig15826.4051.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=684bp|location=Sequence derived from alignment at L-elsbetiae_contig15826:1943..2372+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGGATAAAGTATGGGGATGGGTAATGGGGGGGGTCGGCTTGGGGGT
TAGGGTTACGGTCACGGTTAGGGTTACGGAGCCCCTGTCGTACTATTTCC
TATATTATAGACAGGAATTGCAGGAATTCTTCTTCGCCCAGACGGTACCC
ATCTTATCCGGTAGCGAAAATAACAGTTCGGTTCCACAGACGGCGGCGGT
GGCGGTGGCGGCGCCAAGACACGAGGCAACACAGAACGACCGTGCGAGGC
ATTTGCTTCGTGTAGAGGCGCCGTGTCTCGTCGGGTATTGTAGCGAGAAA
GTCCGACAAGGCGTCATCATAAAAAAGCATTGTTTTCAGTAAATGTGGGA
TAAAGTATGGGGATGGGTAATGGGGGGGGTCGGCTTGGGGGTTAGGGTTA
CGGTCACGGTTAGGGTTACGGAGCCCCTGTCGTACTATTTCCTATATTAT
AGACAGGAATTGCAGGAATTCTTCTTCGCCCAGACGGTACCCATCTTATC
CGGTAGCGAAAATAACAGTTCGGTTCCACAGACGGCGGCGGTGGCGGTGG
CGGCGCCAAGACACGAGGCAACACAGAACGACCGTGCGAGGCATTTGCTT
CGTGTAGAGGCGCCGTGTCTCGTCGGGTATTGTAGCGAGAAAGTCCGACA
AGGCGTCATCATAAAAAAGCATTGTTTTCAGTAA
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