mRNA_L-elsbetiae_contig1577.4025.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1577.4025.1
Unique NamemRNA_L-elsbetiae_contig1577.4025.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.040e-8
Identity = 37/70 (52.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    1 GETCPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAG--NCCILGPGGILANSDDCSVTGAAPCIVD 204
            G+ C  GIPGI S  G  CC   CG+CGG GC    GG G  NCC    G I    + CSVT AAPCIVD
Sbjct:  727 GDVCSNGIPGIQS--GITCCLAECGECGGPGCAEFGGGLGQDNCC---QGRIEEYGELCSVTLAAPCIVD 791          
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: D7FIC5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC5_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.080e-8
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:    4 ETCPGGIPGIVSDDGGVCCDIACGQCGGRGCQ---NAPGGAGNCCILGPGGILANSDDCSVTGAAPCIV 201
            ETC  G+ GI   +G VCC +ACGQCGG+GC    +A G +G+ C    GGI A+ + C  T  APCI+
Sbjct:  446 ETCSNGLEGI-DGNGVVCCPLACGQCGGKGCYTSGSANGLSGDSCC--GGGIKASDEYCDETNEAPCII 511          
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.350e-7
Identity = 35/69 (50.72%), Postives = 38/69 (55.07%), Query Frame = 1
Query:    4 ETCPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAG--NCCILGPGGILANSDDCSVTGAAPCIVD 204
            +TC  GIPGI S  G  CC   CG CGG GC    GG G  NCC      I    + CSVT AAPC+VD
Sbjct: 2226 DTCSNGIPGIQS--GNACCLAECGGCGGSGCAQLGGGLGEDNCC---QSEIEDFGELCSVTMAAPCVVD 2289          
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.320e-7
Identity = 32/67 (47.76%), Postives = 37/67 (55.22%), Query Frame = 1
Query:    7 TCPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAG-NCCILGPGGILANSDDCSVTGAAPCIVD 204
            TC  GI GI      +CCD ACG CGG GC N  G  G +CC      I   +D CSVT  APC++D
Sbjct:  176 TCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEE---IAVVNDLCSVTNEAPCVMD 239          
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.390e-7
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1
Query:    4 ETCPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAG----NCCILGPGGILANSDDCSVTGAAPCIV 201
             TC  G+ GI ++ G VCC +ACGQCGG GC  +    G    +CC    GG+ A+ + C  T  APCI+
Sbjct:  191 RTCSNGLEGIDAN-GVVCCPLACGQCGGTGCNTSGAAFGLDGSSCC---GGGVKASDEYCDETNEAPCII 256          
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 3.080e-6
Identity = 33/69 (47.83%), Postives = 37/69 (53.62%), Query Frame = 1
Query:    4 ETCPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAG--NCCILGPGGILANSDDCSVTGAAPCIVD 204
            + C  GIPGI +  G  CC   CG CGGRGC    GG G  +CC      I      CSVT AAPC+VD
Sbjct: 1990 DLCSNGIPGIQT--GNACCLAECGTCGGRGCAEYGGGLGEDSCC---QSEIEDFGQLCSVTMAAPCVVD 2053          
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Match: A0A7R9YY20_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YY20_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.980e-6
Identity = 30/65 (46.15%), Postives = 36/65 (55.38%), Query Frame = 1
Query:   10 CPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAGNCCILGPGGILANSDD-CSVTGAAPCIV 201
            C  GI G+ S    VCC  +CGQCGG GC   PGG+ NCC     G +A+SD  CS      CI+
Sbjct:  253 CYNGIEGVSSSGVEVCCASSCGQCGGSGCWQFPGGSANCCT----GAIASSDIVCSEFTDVGCIM 313          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1577.4025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JJ37_9PHAE2.040e-852.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIC5_ECTSI5.080e-847.83Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FJ68_ECTSI1.350e-750.72WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K7R2_9PHAE3.320e-747.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC43_9PHAE8.390e-742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG29_9PHAE3.080e-647.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9YY20_9STRA3.980e-646.15Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1577contigL-elsbetiae_contig1577:23756..23974 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue7e-09
Seed eggNOG ortholog2880.D7FHN6
KEGG koko:K19720
KEGG Pathwayko04611,ko04926,ko04933,ko04974,ko05146,map04611,map04926,map04933,map04974,map05146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536
Exons1
Model size220
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.800822-CDS-L-elsbetiae_contig1577:23755..239741622815647.800822-CDS-L-elsbetiae_contig1577:23755..23974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1577 23756..23974 +
1691683012.912718-CDS-L-elsbetiae_contig1577:23755..239741691683012.912718-CDS-L-elsbetiae_contig1577:23755..23974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1577 23756..23974 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1577.4025.1prot_L-elsbetiae_contig1577.4025.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1577 23756..23974 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1577.4025.1

>prot_L-elsbetiae_contig1577.4025.1 ID=prot_L-elsbetiae_contig1577.4025.1|Name=mRNA_L-elsbetiae_contig1577.4025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
GETCPGGIPGIVSDDGGVCCDIACGQCGGRGCQNAPGGAGNCCILGPGGI
LANSDDCSVTGAAPCIVDQGKI*
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mRNA from alignment at L-elsbetiae_contig1577:23756..23974+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1577.4025.1 ID=mRNA_L-elsbetiae_contig1577.4025.1|Name=mRNA_L-elsbetiae_contig1577.4025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=219bp|location=Sequence derived from alignment at L-elsbetiae_contig1577:23756..23974+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGAGACGTGCCCCGGCGGCATCCCCGGTATCGTGTCCGACGACGGGGG AGTGTGCTGCGACATCGCGTGTGGTCAGTGCGGGGGCCGCGGCTGTCAAA ACGCCCCCGGGGGGGCCGGCAACTGCTGCATCCTCGGGCCGGGCGGCATC CTCGCCAACTCGGACGACTGCTCCGTGACTGGGGCTGCCCCGTGCATCGT TGACCAGGGTAAGATTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1577:23756..23974+

>mRNA_L-elsbetiae_contig1577.4025.1 ID=mRNA_L-elsbetiae_contig1577.4025.1|Name=mRNA_L-elsbetiae_contig1577.4025.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1577:23756..23974+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGAGACGTGCCCCGGCGGCATCCCCGGTATCGTGTCCGACGACGGGGG
AGTGTGCTGCGACATCGCGTGTGGTCAGTGCGGGGGCCGCGGCTGTCAAA
ACGCCCCCGGGGGGGCCGGCAACTGCTGCATCCTCGGGCCGGGCGGCATC
CTCGCCAACTCGGACGACTGCTCCGTGACTGGGGCTGCCCCGTGCATCGT
TGACCAGGGTAAGATTTAGGGTGAGACGTGCCCCGGCGGCATCCCCGGTA
TCGTGTCCGACGACGGGGGAGTGTGCTGCGACATCGCGTGTGGTCAGTGC
GGGGGCCGCGGCTGTCAAAACGCCCCCGGGGGGGCCGGCAACTGCTGCAT
CCTCGGGCCGGGCGGCATCCTCGCCAACTCGGACGACTGCTCCGTGACTG
GGGCTGCCCCGTGCATCGTTGACCAGGGTAAGATTTAG
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