mRNA_L-elsbetiae_contig1572.3996.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1572.3996.1
Unique NamemRNA_L-elsbetiae_contig1572.3996.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1572.3996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1572contigL-elsbetiae_contig1572:6979..7453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size475
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1572.3996.1prot_L-elsbetiae_contig1572.3996.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1572 7054..7410 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.5410898-UTR-L-elsbetiae_contig1572:6978..70531622815645.5410898-UTR-L-elsbetiae_contig1572:6978..7053Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1572 6979..7053 +
1691683011.4279273-UTR-L-elsbetiae_contig1572:6978..70531691683011.4279273-UTR-L-elsbetiae_contig1572:6978..7053Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1572 6979..7053 +
1622815645.5672855-UTR-L-elsbetiae_contig1572:7410..74531622815645.5672855-UTR-L-elsbetiae_contig1572:7410..7453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1572 7411..7453 +
1691683011.449028-UTR-L-elsbetiae_contig1572:7410..74531691683011.449028-UTR-L-elsbetiae_contig1572:7410..7453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1572 7411..7453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.5536363-CDS-L-elsbetiae_contig1572:7053..74101622815645.5536363-CDS-L-elsbetiae_contig1572:7053..7410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1572 7054..7410 +
1691683011.4392242-CDS-L-elsbetiae_contig1572:7053..74101691683011.4392242-CDS-L-elsbetiae_contig1572:7053..7410Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1572 7054..7410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1572.3996.1

>prot_L-elsbetiae_contig1572.3996.1 ID=prot_L-elsbetiae_contig1572.3996.1|Name=mRNA_L-elsbetiae_contig1572.3996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MRGTTAAIISVKNSKQTAVCERLIEIGRGSFPSSGTKNMSTYAIRKKRRS
SLPTVSYARYHPPQNTTPGDDVSRHRTEEYPVPPGPQNITPPLEVVDGSA
CFFLLPLFCSRALITYCH*
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mRNA from alignment at L-elsbetiae_contig1572:6979..7453+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1572.3996.1 ID=mRNA_L-elsbetiae_contig1572.3996.1|Name=mRNA_L-elsbetiae_contig1572.3996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=475bp|location=Sequence derived from alignment at L-elsbetiae_contig1572:6979..7453+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCCGTAAGCGCGGGGCGCAGCAGTAGGTGCTACTCCTGAAGAGCCTT
GGTCGCTGAGGGAGCTAGAGCTGTGATGAGAGGTACGACAGCTGCCATAA
TTTCGGTAAAAAACAGCAAACAAACGGCTGTGTGCGAAAGGTTGATTGAG
ATCGGGCGGGGCTCTTTTCCATCCTCGGGAACGAAGAATATGTCAACGTA
CGCAATACGCAAAAAACGTAGAAGTAGTCTACCTACCGTTTCCTATGCAA
GATACCACCCCCCACAGAATACCACCCCTGGTGATGATGTTTCCAGGCAC
AGAACAGAGGAGTATCCAGTACCACCCGGGCCACAGAACATAACACCCCC
CCTTGAGGTTGTGGACGGATCTGCTTGTTTTTTTCTCCTCCCGTTGTTTT
GCTCTCGTGCCCTTATTACTTATTGCCATTAGTCTTGATCTCCTACGATA
AGGAAGGGTGATGTCGACCGCGAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1572:6979..7453+

>mRNA_L-elsbetiae_contig1572.3996.1 ID=mRNA_L-elsbetiae_contig1572.3996.1|Name=mRNA_L-elsbetiae_contig1572.3996.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig1572:6979..7453+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGGTACGACAGCTGCCATAATTTCGGTAAAAAACAGCAAACAAAC
GGCTGTGTGCGAAAGGTTGATTGAGATCGGGCGGGGCTCTTTTCCATCCT
CGGGAACGAAGAATATGTCAACGTACGCAATACGCAAAAAACGTAGAAGT
AGTCTACCTACCGTTTCCTATGCAAGATACCACCCCCCACAGAATACCAC
CCCTGGTGATGATGTTTCCAGGCACAGAACAGAGGAGTATCCAGTACCAC
CCGGGCCACAGAACATAACACCCCCCCTTGAGGTTGTGGACGGATCTGCT
TGTTTTTTTCTCCTCCCGTTGTTTTGCTCTCGTGCCCTTATTACTTATTG
CCATTAGATGAGAGGTACGACAGCTGCCATAATTTCGGTAAAAAACAGCA
AACAAACGGCTGTGTGCGAAAGGTTGATTGAGATCGGGCGGGGCTCTTTT
CCATCCTCGGGAACGAAGAATATGTCAACGTACGCAATACGCAAAAAACG
TAGAAGTAGTCTACCTACCGTTTCCTATGCAAGATACCACCCCCCACAGA
ATACCACCCCTGGTGATGATGTTTCCAGGCACAGAACAGAGGAGTATCCA
GTACCACCCGGGCCACAGAACATAACACCCCCCCTTGAGGTTGTGGACGG
ATCTGCTTGTTTTTTTCTCCTCCCGTTGTTTTGCTCTCGTGCCCTTATTA
CTTATTGCCATTAG
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