mRNA_L-elsbetiae_contig15670.3968.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15670.3968.1
Unique NamemRNA_L-elsbetiae_contig15670.3968.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15670.3968.1 vs. uniprot
Match: A0A6H5JJQ2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJQ2_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.300e-41
Identity = 122/211 (57.82%), Postives = 140/211 (66.35%), Query Frame = 1 
Query:   31 RESVATFKRAIAAVGTSDPGMWVCYAAFLQGQLKACE--EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARLKEVLARAVVIHLSPSSAEDGGSLAMWKGLAPTTXXXXXXXIAARKERGGASLRATRGVSTSAGELEAAERRRTEDARGTLSAGLADICLALGEPEEAHVALRSVTRALARRPGRWLPRAALERRLAAVSGGDQGTA 657
            +ES+ TF+ A+ AVG S P MWV YA+FL+G+L+ACE  +                       XXXXXXXLAARL+EVLAR+V IHL+  +A +              XXXXXXXIAARKERGGASL ATRGVS  A  LEA  RRR ED+R  LSAGLAD+CLALGEPEEA  ALR+ T  L RRPG WL RAALERRLAA+ GGD G A
Sbjct:  246 QESLDTFELAVEAVGASQPDMWVRYASFLRGRLEACEGAKGRKRGGGAVDGGKGGEMVGASAPXXXXXXXLAARLREVLARSVEIHLAGGAAPNDPXX--------XXXXXXXXXIAARKERGGASLLATRGVSAPAEGLEAPSRRREEDSREALSAGLADVCLALGEPEEALAALRAATGVLPRRPGPWLRRAALERRLAAL-GGDPGQA 447
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15670.3968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJQ2_9PHAE5.300e-4157.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15670contigL-elsbetiae_contig15670:2643..3360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue7.1e-34
Seed eggNOG ortholog2880.D8LSS2
KEGG koko:K14557
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.snoRNA binding
EggNOG OGsCOG5191@1,KOG2396@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size718
Cds size717
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.804026-CDS-L-elsbetiae_contig15670:2642..33591622815642.804026-CDS-L-elsbetiae_contig15670:2642..3359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15670 2643..3359 +
1691683009.6269448-CDS-L-elsbetiae_contig15670:2642..33591691683009.6269448-CDS-L-elsbetiae_contig15670:2642..3359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15670 2643..3359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15670.3968.1prot_L-elsbetiae_contig15670.3968.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15670 2643..3359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15670.3968.1

>prot_L-elsbetiae_contig15670.3968.1 ID=prot_L-elsbetiae_contig15670.3968.1|Name=mRNA_L-elsbetiae_contig15670.3968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=239bp
GGAEGLGPAGRESVATFKRAIAAVGTSDPGMWVCYAAFLQGQLKACEEEE
ERKSGGGKKRKKSSSMVRSSAPAAAAASLAARLKEVLARAVVIHLSPSSA
EDGGSLAMWKGLAPTTTTVVTAAIAARKERGGASLRATRGVSTSAGELEA
AERRRTEDARGTLSAGLADICLALGEPEEAHVALRSVTRALARRPGRWLP
RAALERRLAAVSGGDQGTAVVAAGAAGNVAGGGASRLAS
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mRNA from alignment at L-elsbetiae_contig15670:2643..3360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15670.3968.1 ID=mRNA_L-elsbetiae_contig15670.3968.1|Name=mRNA_L-elsbetiae_contig15670.3968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig15670:2643..3360+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGCCGAAGGCCTGGGGCCGGCGGGGCGAGAAAGCGTGGCCACGTT
TAAGCGCGCCATTGCGGCGGTTGGGACCTCTGACCCTGGCATGTGGGTGT
GCTACGCGGCCTTCTTGCAAGGACAGCTGAAAGCCTGCGAGGAGGAAGAA
GAGAGAAAGAGCGGCGGGGGCAAGAAGCGTAAGAAAAGCAGCTCGATGGT
TCGATCGTCGGCGCCCGCCGCCGCCGCCGCTTCCCTCGCGGCTCGGCTCA
AGGAGGTGCTCGCGCGAGCGGTGGTTATCCACCTGTCTCCTTCCAGCGCA
GAAGATGGCGGCTCCTTGGCGATGTGGAAAGGCCTTGCCCCGACCACCAC
AACCGTAGTCACGGCCGCGATCGCCGCCCGCAAGGAAAGAGGAGGCGCGT
CGCTGCGGGCGACGAGGGGGGTGTCGACTTCCGCCGGGGAGCTCGAGGCG
GCAGAGCGGCGTCGGACCGAGGACGCCCGCGGGACCCTGTCCGCGGGCCT
GGCGGACATCTGCCTCGCGCTGGGGGAGCCTGAGGAAGCCCACGTGGCGC
TTCGGTCGGTGACGCGAGCCCTCGCACGGCGGCCGGGCCGGTGGCTGCCC
CGCGCTGCACTGGAGCGGCGTCTCGCGGCGGTGAGCGGCGGCGACCAGGG
AACCGCGGTGGTGGCGGCTGGAGCGGCGGGCAATGTCGCTGGTGGCGGGG
CGTCGAGACTTGCGAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15670:2643..3360+

>mRNA_L-elsbetiae_contig15670.3968.1 ID=mRNA_L-elsbetiae_contig15670.3968.1|Name=mRNA_L-elsbetiae_contig15670.3968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1434bp|location=Sequence derived from alignment at L-elsbetiae_contig15670:2643..3360+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGCCGAAGGCCTGGGGCCGGCGGGGCGAGAAAGCGTGGCCACGTT
TAAGCGCGCCATTGCGGCGGTTGGGACCTCTGACCCTGGCATGTGGGTGT
GCTACGCGGCCTTCTTGCAAGGACAGCTGAAAGCCTGCGAGGAGGAAGAA
GAGAGAAAGAGCGGCGGGGGCAAGAAGCGTAAGAAAAGCAGCTCGATGGT
TCGATCGTCGGCGCCCGCCGCCGCCGCCGCTTCCCTCGCGGCTCGGCTCA
AGGAGGTGCTCGCGCGAGCGGTGGTTATCCACCTGTCTCCTTCCAGCGCA
GAAGATGGCGGCTCCTTGGCGATGTGGAAAGGCCTTGCCCCGACCACCAC
AACCGTAGTCACGGCCGCGATCGCCGCCCGCAAGGAAAGAGGAGGCGCGT
CGCTGCGGGCGACGAGGGGGGTGTCGACTTCCGCCGGGGAGCTCGAGGCG
GCAGAGCGGCGTCGGACCGAGGACGCCCGCGGGACCCTGTCCGCGGGCCT
GGCGGACATCTGCCTCGCGCTGGGGGAGCCTGAGGAAGCCCACGTGGCGC
TTCGGTCGGTGACGCGAGCCCTCGCACGGCGGCCGGGCCGGTGGCTGCCC
CGCGCTGCACTGGAGCGGCGTCTCGCGGCGGTGAGCGGCGGCGACCAGGG
AACCGCGGTGGTGGCGGCTGGAGCGGCGGGCAATGTCGCTGGTGGCGGGG
CGTCGAGACTTGCGAGCGGCGGCGCCGAAGGCCTGGGGCCGGCGGGGCGA
GAAAGCGTGGCCACGTTTAAGCGCGCCATTGCGGCGGTTGGGACCTCTGA
CCCTGGCATGTGGGTGTGCTACGCGGCCTTCTTGCAAGGACAGCTGAAAG
CCTGCGAGGAGGAAGAAGAGAGAAAGAGCGGCGGGGGCAAGAAGCGTAAG
AAAAGCAGCTCGATGGTTCGATCGTCGGCGCCCGCCGCCGCCGCCGCTTC
CCTCGCGGCTCGGCTCAAGGAGGTGCTCGCGCGAGCGGTGGTTATCCACC
TGTCTCCTTCCAGCGCAGAAGATGGCGGCTCCTTGGCGATGTGGAAAGGC
CTTGCCCCGACCACCACAACCGTAGTCACGGCCGCGATCGCCGCCCGCAA
GGAAAGAGGAGGCGCGTCGCTGCGGGCGACGAGGGGGGTGTCGACTTCCG
CCGGGGAGCTCGAGGCGGCAGAGCGGCGTCGGACCGAGGACGCCCGCGGG
ACCCTGTCCGCGGGCCTGGCGGACATCTGCCTCGCGCTGGGGGAGCCTGA
GGAAGCCCACGTGGCGCTTCGGTCGGTGACGCGAGCCCTCGCACGGCGGC
CGGGCCGGTGGCTGCCCCGCGCTGCACTGGAGCGGCGTCTCGCGGCGGTG
AGCGGCGGCGACCAGGGAACCGCGGTGGTGGCGGCTGGAGCGGCGGGCAA
TGTCGCTGGTGGCGGGGCGTCGAGACTTGCGAGC
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