mRNA_L-elsbetiae_contig1564.3947.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1564.3947.1
Unique NamemRNA_L-elsbetiae_contig1564.3947.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1564.3947.1 vs. uniprot
Match: A0A6H5KY04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY04_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.840e-22
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 2 
Query:   53 RDLSSQMFSCVLGLLEGRACAGDLLEVLAGFLEALPGDTEYELDVLVSAARLVHRALAVTPPAALAVALAD 265
            R+LSS+M SC++ LL+G A AGDLL VLAGFLE LPGDT++EL +LVSAARLVH  LA+TPPAA AVALAD
Sbjct:  795 RELSSRMLSCMVSLLDGEAFAGDLLGVLAGFLETLPGDTDHELGILVSAARLVHLTLALTPPAARAVALAD 865
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BLAST of mRNA_L-elsbetiae_contig1564.3947.1 vs. uniprot
Match: D7FVV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVV4_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.730e-21
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 2 
Query:   38 VLKELRDLSSQMFSCVLGLLEGRACAGDLLEVLAGFLEALPGDTEYELDVLVSAARLVHRALAVTPPAALAVALAD 265
            +L+  R+LSS+M SC++GLL+G A AGDLL VLAGFLE LPGDT++EL +LVSAARLVH  LA+TP AA  VALAD
Sbjct:  311 LLEVRRELSSRMLSCMVGLLDGEAFAGDLLGVLAGFLETLPGDTDHELGILVSAARLVHLTLALTPLAARTVALAD 386
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1564.3947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY04_9PHAE5.840e-2273.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVV4_ECTSI2.730e-2168.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1564contigL-elsbetiae_contig1564:4257..4781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.1438563-CDS-L-elsbetiae_contig1564:4256..43541622815641.1438563-CDS-L-elsbetiae_contig1564:4256..4354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 4257..4354 -
1691683008.7159166-CDS-L-elsbetiae_contig1564:4256..43541691683008.7159166-CDS-L-elsbetiae_contig1564:4256..4354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 4257..4354 -
1622815641.1540756-CDS-L-elsbetiae_contig1564:4612..47811622815641.1540756-CDS-L-elsbetiae_contig1564:4612..4781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 4613..4781 -
1691683008.726175-CDS-L-elsbetiae_contig1564:4612..47811691683008.726175-CDS-L-elsbetiae_contig1564:4612..4781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1564 4613..4781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1564.3947.1prot_L-elsbetiae_contig1564.3947.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1564 4257..4781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1564.3947.1

>prot_L-elsbetiae_contig1564.3947.1 ID=prot_L-elsbetiae_contig1564.3947.1|Name=mRNA_L-elsbetiae_contig1564.3947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
RRRRRRCRRWRGGAERAAGPFIADVFVRAGLAGGPGVRRRPARGSGRFPR
GAARRYGVRARCSRERGEAGPPRPGRNSAGGPRGGLGR*
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mRNA from alignment at L-elsbetiae_contig1564:4257..4781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1564.3947.1 ID=mRNA_L-elsbetiae_contig1564.3947.1|Name=mRNA_L-elsbetiae_contig1564.3947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=525bp|location=Sequence derived from alignment at L-elsbetiae_contig1564:4257..4781- (Laminarionema elsbetiae ELsaHSoW15)
CGACGGCGACGACGGCGATGCCGACGGTGGCGAGGCGGTGCTGAAAGAGC
TGCGGGACCTTTCATCGCAGATGTTTTCGTGCGTGCTGGGCTTGCTGGAG
GGCCGGGCGTGCGCCGGCGACCTGCTCGAGGTTCTGGCCGGTTTCCTCGA
GGCGCTGCCCGGAGATACGGTGAGCCGAAAAAAACACGGGAGGTGGGGGT
TTTGTGTGGGTTGAGAGGGTTCGGTTGCGCGTCTCACCTGCCGATCGGTG
GTCGGAAAAAGCGCGTTACAGATGTTTTTTTTTTGTTAATCTTCACATCT
GTTGCCAGCACTTCAGACAATCTGCACACGCACGGAACTCAAACGAAGCG
CGTGCCTTGGGGTCGCGACCTCCACTCCAACCATCCATTACATAAAGATA
TGATATCGTATTTGTTTTCCCCTCCAGGAGTACGAGCTCGATGTTCTCGT
GAGCGCGGCGAGGCTGGTCCACCGCGCCCTGGCCGTAACTCCGCCGGCGG
CCCTCGCGGTGGCCTTGGCCGATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1564:4257..4781-

>mRNA_L-elsbetiae_contig1564.3947.1 ID=mRNA_L-elsbetiae_contig1564.3947.1|Name=mRNA_L-elsbetiae_contig1564.3947.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1564:4257..4781- (Laminarionema elsbetiae ELsaHSoW15)
CGACGGCGACGACGGCGATGCCGACGGTGGCGAGGCGGTGCTGAAAGAGC
TGCGGGACCTTTCATCGCAGATGTTTTCGTGCGTGCTGGGCTTGCTGGAG
GGCCGGGCGTGCGCCGGCGACCTGCTCGAGGTTCTGGCCGGTTTCCTCGA
GGCGCTGCCCGGAGATACGCGACGGCGACGACGGCGATGCCGACGGTGGC
GAGGCGGTGCTGAAAGAGCTGCGGGACCTTTCATCGCAGATGTTTTCGTG
CGTGCTGGGCTTGCTGGAGGGCCGGGCGTGCGCCGGCGACCTGCTCGAGG
TTCTGGCCGGTTTCCTCGAGGCGCTGCCCGGAGATACGGAGTACGAGCTC
GATGTTCTCGTGAGCGCGGCGAGGCTGGTCCACCGCGCCCTGGCCGTAAC
TCCGCCGGCGGCCCTCGCGGTGGCCTTGGCCGATGAGAGTACGAGCTCGA
TGTTCTCGTGAGCGCGGCGAGGCTGGTCCACCGCGCCCTGGCCGTAACTC
CGCCGGCGGCCCTCGCGGTGGCCTTGGCCGATGA
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