mRNA_L-elsbetiae_contig1559.3914.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1559.3914.1 vs. uniprot
Match: D8LSN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN4_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.150e-87 Identity = 437/1006 (43.44%), Postives = 508/1006 (50.50%), Query Frame = 1 Query: 1 TSEEERGRVQVVGKSEVKASRSMGPSPYGTLVRSSSQEHPADGVGGGGLARGSSGRGGGPRTLPHSHSMGSEGSSVVSDKFTYTNPMHKGEIKKTSSPNEYGDDLAQHYEG--GDPTTMSDNSSELPHNITSNPLFSNDSYRTGASASSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSWRSGVTAGSGRDGGGGMTSGSFDSERGGEADR-----SSSFDS-------GDGSGYQGYTRGGXXXXXTS--MSVFSDASSRMPFGLSPVAERVAGRGESSDMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDAESMFRPPSPGSVSRPLQPLLAQQSPLSVASGFGSRSNSFAMSSRSNS----YASPKPVSAPGLAGGGA-----------QKGIPISTESLKAIKVVRGG-DAEREAVXXXXXXXXXKVGRSMSQEYSSSAYQLSPMAEHPEYGSSQGTAAGISDSDLGSYGGGGGDKIVISRSASMSPRTLARRRQEREIRYGSSGSDLSGYSGIASRXXXXXXXXXXXXXXX-SDAGLTSGSTLTSFNEGSATGSPGAGACVCRGDDGAQVNPMVAAAETGGSIFQGSDGASDASADAAAGRG----SSGGLSALDRRVKSASVAPTNSPGFERGASRGAVGXXXXXXXXXTVDEDGDEFFDATAPARDTQAAAAAVEEQSATPARSXXX----------------------------------GETASTAGRGRGGAKSLRFSSRGRATGRGGXXXXXXXXXXXXXAPGEVKTEARLTAAXXXXXXXXXXXGRQVDEDVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNRLGVGGTGGEVKSVLKTAGSFRNTAN-PRSVSFA-DSDLDSRLGRDDDNGGGGMLA-LRQHLADPSQPSGSYRRQESDESSGFSNESLSPSVMAST--------HQSSFDSGSTYTAASVASYATSMTGTDSDGG 2766 T EEE+G VGKSE+ AS SMGPSP+ LVRS+SQE A + R SS G P+++ +HS+GSE SS VS+KF YTNPMHK E KK S PNEYGDDLA+HYEG GD MSD SSELPH T NPLFS++S R XXXXXXXXXXXXXXXXXXXXXXXXXX S V + TS + E+ SSSFDS G+ + GG + +SV S+ SSRMPFGLSPVAER RGES +T DDAES+FRPPSPGSVSRPLQPLLAQQSP+S SGF S+SNSFAMSSRS+S +ASPK AGGGA +KGI S ESLKAIK+ GG DAEREAVXXXXXXXXX V RS+SQE + SS+GTAA + +LGS G +KI S +S+SP LAR+ E RYGSS S+L G XXXXXX SDA LTS STL+SFN S + + R + +P A+A GGS+F SD SDASADAAAG G S G SALDRRVKSA+VAP+ + A GA TVDEDGDEF+DAT+ A + XXX G T G + + R RA G A GEV TEA+L AA GR V +DVR XXXXXXXXX SNR G + E+KS LK SFR+TA PRSVSFA DS + LRQHLADPS+PSGSYRRQESD SS S ESLSPS S+ Q+SFD+ ST++A SV+SYAT+ T + + GG Sbjct: 556 TIEEEQGLH--VGKSEMTASHSMGPSPHHALVRSTSQEAAA-------VTRPSSS--GKPKSVHRTHSIGSETSSAVSEKFVYTNPMHKHE-KKLSPPNEYGDDLAKHYEGEVGD---MSDISSELPHK-TDNPLFSSNSNRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGHLTESDATVEVDSYGASMSDAASTSLASSQSNTSESPLIDQAYSSSFDSDVDHHGGGEVAAEGSSLVGGRNPRGSGGVLSVTSETSSRMPFGLSPVAERTDSRGESPGLTTNSSSTTGGASTVYLARAGADGPRGVPWSYSGPDGGGSYSMASADAAGAAGAEDDDAESVFRPPSPGSVSRPLQPLLAQQSPMSCVSGFTSKSNSFAMSSRSSSMASSFASPK-------AGGGAAAASRLPPVGLRKGI--SNESLKAIKIASGGGDAEREAVXXXXXXXXXXVARSLSQE------------DRRTEASSEGTAA-TGEDELGSLG---MEKIPRSSVSSLSP--LARQHNEWRARYGSSQSELKFAEGXXXXXXXXXXAASSRMASGTSDARLTSASTLSSFNGESIVSAMPSEDARARSSGATRASPDPASAAGGGSVFGQSDNGSDASADAAAGHGDASISKGLASALDRRVKSAAVAPSPTHSRSGRAGTGAT------KSESTVDEDGDEFYDATSTADGAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVLDDTRGLDQASIVAAE-ECRDRAIEAG------TAAAGAAVASGEVTTEAQLMAAGAVAAAKATK-GRAVPDDVRRKAIQAGAXXXXXXXXXDVGPPGGGGV----SNRWSTGTSAVELKSALKKESSFRSTAEKPRSVSFAYDSXXXXXXXXXXXXXXSSRMGGLRQHLADPSRPSGSYRRQESD-SSSLSGESLSPSYQGSSATGGGDSVSQASFDTDSTFSAVSVSSYATATTTSTAYGG 1499
BLAST of mRNA_L-elsbetiae_contig1559.3914.1 vs. uniprot
Match: A0A6H5JJJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ8_9PHAE) HSP 1 Score: 286 bits (731), Expect = 5.310e-76 Identity = 330/711 (46.41%), Postives = 388/711 (54.57%), Query Frame = 1 Query: 1 TSEEERGRVQVVGKSEVKASRSMGPSPYGTLVRSSSQEHPADGVGGGGLARGSSGRGGGPRTLPHSHSMGSEGSSVVSDKFTYTNPMHKGEIKKTSSPNEYGDDLAQHYEG--GDPTTMSDNSSELPHNITSNPLFSNDSYRTGASASSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSSWRSGVTAGSGR-----DGGGGMTSGSFDSERGGEADRS----------SSFDS-------GDGSGYQGYTRGGXXXXXTS--MSVFSDASSRMPFGLSPVAERVAGRGESSDMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDD--AESMFRPPSPGSVSRPLQPLLAQQSPLSVASGFGSRSNSFAMSSRSNS----YASPKP--------VSAPGLAGGGAQKGIPISTESLKAIKVVRGG-DAEREAVXXXXXXXXXKVGRSMSQEYSSSAYQLSPMAEHPEYGSSQGTAAGISDSDLGSYGGGGGDKIVISRSASMSPRTLARRRQEREIRYGSSGSDLS-GYSGIASRXXXXXXXXXXXXXXXSDAGLTSGSTLTSFNEGSATGSPGAGACVCRGDDGAQVNPMVAAAETGGSIFQGSDGASDASADAAAGRGSSGG----LSALDRRVKSASVAPTNSPGFERGASRGAVGXXXXXXXXXTVDEDGDEFFDATAPA 1995 T EEE+G VGKSE+ AS SMGPSP+ +L+RS+SQE G + R SS G P+ + +HS+GSE +S VS+KF YTNPMHK E KK S PNEYGDDLAQHYEG GD MSD SSELPH+ T NPLFS+DS R G SSPT XXXXXXXXXXXXXXXXXXXXXXXX A SG G M+ + S +++ S SSFDS G+ + GG + +S+ S+ SSRMPFGLSPVAER RGES +T XXXXXX AES+FRPPSPGSVSRPLQPLLAQQSP+S SGF S+SNSFAMSSRS+S +ASPK +A L G +KGI S ESLKAIK+ GG DAEREAVXXXXXXXXXKV RS+SQE P E S+GTAA + + +LGS G +KI S +S+SP LAR+ E RYGSS S+L G X SDA LTS STL+SFN S + + + + +P A+ GG +F SD SDASADAAAG G + G SALDRRVKSA+VAP+ A GA TVDE GDEF+DAT+ A Sbjct: 316 TIEEEQGLR--VGKSEMTASHSMGPSPHHSLIRSTSQEA-------GAVTRSSSS--GRPKIVHRTHSIGSETNSAVSEKFVYTNPMHKHE-KKLSPPNEYGDDLAQHYEGELGD---MSDISSELPHDKTDNPLFSSDSNRDGGG-SSPTSVAEAARXXXXXXXXXXXXXXXXXXXXXXXXXXCXXXXHLAESGAIVEVDSHGASMSDAASTSLASSQSNTSESPLIDQAYSSSFDSDVDQRGGGEVAAEGSPLVGGRNSRGSGGVLSIASETSSRMPFGLSPVAERTDSRGESPGLTTNSSSTTGGVSTVYLARAGADGPRGVPWSYGGPDGRGSYSMASDAAXXXXXXXXXXAESVFRPPSPGSVSRPLQPLLAQQSPMSCVSGFTSKSNSFAMSSRSSSMASSFASPKAGXXXXXXXAAASRLPPVGLRKGI--SNESLKAIKITSGGGDAEREAVXXXXXXXXXKVARSLSQE--------DPRTE----AGSEGTAA-MGEDELGSLG---VEKIPKSSVSSLSP--LARQHNEWRARYGSSQSELKFPEGGXXXXXRGSLAASSRMASGMSDARLTSASTLSSFNGESIVSAMPSADARAQSSGATRASPDPASPAGGGGVFGQSDTGSDASADAAAGHGDASGSKGLASALDRRVKSAAVAPSPKRSRSGRAGTGAT------KSESTVDEGGDEFYDATSTA 984 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1559.3914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1559.3914.1 >prot_L-elsbetiae_contig1559.3914.1 ID=prot_L-elsbetiae_contig1559.3914.1|Name=mRNA_L-elsbetiae_contig1559.3914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1084bp TSEEERGRVQVVGKSEVKASRSMGPSPYGTLVRSSSQEHPADGVGGGGLAback to top mRNA from alignment at L-elsbetiae_contig1559:154..7406+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1559.3914.1 ID=mRNA_L-elsbetiae_contig1559.3914.1|Name=mRNA_L-elsbetiae_contig1559.3914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7253bp|location=Sequence derived from alignment at L-elsbetiae_contig1559:154..7406+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1559:154..7406+ >mRNA_L-elsbetiae_contig1559.3914.1 ID=mRNA_L-elsbetiae_contig1559.3914.1|Name=mRNA_L-elsbetiae_contig1559.3914.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6504bp|location=Sequence derived from alignment at L-elsbetiae_contig1559:154..7406+ (Laminarionema elsbetiae ELsaHSoW15)back to top |