mRNA_L-elsbetiae_contig15517.3880.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15517.3880.1
Unique NamemRNA_L-elsbetiae_contig15517.3880.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A161YJS8_9PEZI (Ankyrin repeat protein (Fragment) n=1 Tax=Colletotrichum tofieldiae TaxID=708197 RepID=A0A161YJS8_9PEZI)

HSP 1 Score: 79.7 bits (195), Expect = 7.380e-15
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:   82 STPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANM 366
            STPL +AA  G  G  E+LLN+GAD  M N  + TPLH AV  G    V  LL+ AGT ++A+D +G TP+ LA  +  TE+ + L+A GA+ N+
Sbjct: 1229 STPLHLAAVCGHIGAMEILLNNGADTKMKNNERKTPLHLAVIGGDSDAVIKLLEAAGTELDARDDEGATPLVLAAHYYETEIQQLLVAFGADVNV 1323
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A7R8WQV0_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WQV0_9CRUS)

HSP 1 Score: 75.1 bits (183), Expect = 2.800e-13
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:   85 TPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMAPD 375
            TPL VA +   H V EVLL +GADPN+ +  + +PLH A +         LL   G  VNAKD +G TP+++A+++ R  ++E LLA GA+ N+A +
Sbjct:  296 TPLFVATDWNRHSVVEVLLANGADPNIASEVERSPLHQAESAE----TAELLIQKGAEVNAKDRRGKTPLFVAIENNRHSVVEVLLANGADPNIASE 388
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A7R8X366_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8X366_9CRUS)

HSP 1 Score: 70.5 bits (171), Expect = 5.880e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:   85 TPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMA 369
            TPL+VA E   H V EVLL +G D N+ N ++ +PLH A +         LL   G  VNAKD +G+TP+++A       ++E LLA GA+ ++A
Sbjct:   25 TPLLVATENNHHSVVEVLLANGGDLNIANEDERSPLHQAESAE----TAELLIQKGAEVNAKDRRGMTPLFVATDWNHYSVVEVLLANGADPSIA 115
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A6H5ID49_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5ID49_9HYME)

HSP 1 Score: 68.2 bits (165), Expect = 7.820e-11
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:   73 EIQSTPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALL------QHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMA 369
            E   TPL VA    G  VA++LL  GADPN+PN   VTPLH    + H   +T +       ++    ++ +D  G TP+ LAV H   ++++ LL RGA+ N A
Sbjct:  180 ETDDTPLHVALASNGLEVAQLLLQRGADPNLPNRAGVTPLHIVCDRAHSDELTDMFFELSYQKYQTLKIDVQDQWGRTPLLLAVAHDLGDLMKLLLRRGADPNTA 284
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A7R8ZMZ3_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZMZ3_9CRUS)

HSP 1 Score: 68.2 bits (165), Expect = 7.980e-11
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 1 
Query:   67 FGEIQSTPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMA 369
            FGE   TPL VA +   H + EVLL  GADPN+ + ++ +PLH   +      +  LL     +VNA+D    TP+++A    R  ++E LLA GA+ N+A
Sbjct:  474 FGE---TPLFVATQNDHHSIIEVLLAHGADPNITDSSETSPLHIVKSAE----IAQLLIEKNADVNARDRNNETPLFIAAIKNRHPVIEALLAGGADPNIA 567
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A7R8WJS6_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WJS6_9CRUS)

HSP 1 Score: 68.2 bits (165), Expect = 7.980e-11
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   82 STPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMA 369
            +TPL VA     H V EVLL +GADP + N ++ +PLH A +         LL   G  VNAKD +G TP+++A   +R  ++E LLA GA+  +A
Sbjct:  249 NTPLFVATGYDCHTVVEVLLANGADPKIANEDERSPLHEARSAK----TAELLIQKGAEVNAKDRRGKTPLFVATDCKRHSVVEVLLANGAHPKIA 340
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A6H5IYP4_9HYME (Glutaminase (Fragment) n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IYP4_9HYME)

HSP 1 Score: 68.2 bits (165), Expect = 8.380e-11
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:   85 TPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGH-----YGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMA 369
            TPL +A   G   VA++LL +GADP    ++ +TPLH    + H        + ++L    + VNA+D KG TP++ AV H +  M+E LL RGAN N+A
Sbjct: 2516 TPLHLALSSGSKQVAKLLLKNGADPASAILHGLTPLHIICGRFHNLDHDLAEIFSMLNDDVSQVNAQDNKGRTPLHNAVNHGKKNMIELLLTRGANPNLA 2615
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A6H5IWJ9_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5IWJ9_9HYME)

HSP 1 Score: 67.4 bits (163), Expect = 1.440e-10
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:   40 VGFAQLNLPFG---EIQST-----PLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHA-AVTQGHYGCVTALL------QHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMAPD 375
            VGF +  L  G   ++Q T     PL+ A +     VAE+LL  GADPN  + N +TPLH  +  + +Y  +  LL      +H    ++A+D  G TP++ A+ +    ++E LL RGA+ N+A +
Sbjct:  161 VGFVKKFLDCGVDPDLQLTKESRVPLVAALDASHRNVAELLLRHGADPNKADTNGLTPLHVISCKRDNYVSIATLLFETSGERHRRVQIDAQDVDGKTPLHFAIHYGNANLVEFLLRRGADLNLADE 287
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: UPI000C71C736 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71C736)

HSP 1 Score: 66.6 bits (161), Expect = 2.320e-10
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = 1 
Query:   58 NLPFGEIQSTPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALL------QHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANM 366
            NLP GEI  TPL++A +     VAE+LL  GA  N+PN N +TPLH        G             H    VN+ D  G TP++ A+ +   + +E LL RGA++N+
Sbjct:  136 NLPAGEIDDTPLLLALDWRHKKVAELLLRRGAHWNLPNKNGLTPLHVTCQTNDGGNFMEFFFNINDHLHHQVQVNSSDKFGDTPLHFAMFYGNKKKVELLLRRGADSNL 244
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BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Match: A0A3D4MDI5_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D4MDI5_9PROT)

HSP 1 Score: 65.9 bits (159), Expect = 4.740e-10
Identity = 32/97 (32.99%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:   85 TPLIVAAERGGHGVAEVLLNSGADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYLAVQHRRTEMLEGLLARGANANMAPD 375
            TPL+ AA  G    A +LL++GA+PN+P+   +TPLHAA  +   G +  L+     +++     G + ++ AV H+  E +  L   GA+A++  D
Sbjct:  180 TPLMAAARAGAEEAARILLHAGANPNIPDAQNMTPLHAAAERNDAGMIYTLVCEGHADIDRSANAGYSALHTAVIHKSAEAMRALCDLGADAHLKDD 276
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15517.3880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A161YJS8_9PEZI7.380e-1546.32Ankyrin repeat protein (Fragment) n=1 Tax=Colletot... [more]
A0A7R8WQV0_9CRUS2.800e-1342.27Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A7R8X366_9CRUS5.880e-1341.05Hypothetical protein (Fragment) n=1 Tax=Cyprideis ... [more]
A0A6H5ID49_9HYME7.820e-1138.10Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A7R8ZMZ3_9CRUS7.980e-1138.61Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A7R8WJS6_9CRUS7.980e-1141.67Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A6H5IYP4_9HYME8.380e-1140.00Glutaminase (Fragment) n=1 Tax=Trichogramma brassi... [more]
A0A6H5IWJ9_9HYME1.440e-1033.86Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
UPI000C71C7362.320e-1037.61serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A3D4MDI5_9PROT4.740e-1032.99Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15517contigL-elsbetiae_contig15517:2090..2464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score66.2
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog27679.XP_003942666.1
Preferred nameTRPA1
KEGG koko:K04984
KEGG TC1.A.4.6.1,1.A.4.6.2,1.A.4.6.3,1.A.4.6.5
KEGG Pathwayko04750,map04750
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0002791,GO:0002793,GO:0003008,GO:0003012,GO:0003674,GO:0004888,GO:0005034,GO:0005215,GO:0005216,GO:0005217,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006936,GO:0006939,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007204,GO:0007600,GO:0007606,GO:0008150,GO:0008324,GO:0009266,GO:0009408,GO:0009409,GO:0009410,GO:0009581,GO:0009582,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009719,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010243,GO:0010646,GO:0010647,GO:0010817,GO:0014070,GO:0014074,GO:0014832,GO:0014848,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015278,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016324,GO:0019233,GO:0019722,GO:0019725,GO:0019932,GO:0022607,GO:0022803,GO:0022832,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030424,GO:0031000,GO:0031224,GO:0031226,GO:0031644,GO:0031646,GO:0032024,GO:0032421,GO:0032501,GO:0032879,GO:0032880,GO:0033554,GO:0033555,GO:0034220,GO:0034605,GO:0035556,GO:0035690,GO:0035774,GO:0036270,GO:0038023,GO:0042221,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042802,GO:0042995,GO:0043005,GO:0043269,GO:0043270,GO:0043279,GO:0043933,GO:0044057,GO:0044070,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0046677,GO:0046873,GO:0046883,GO:0046887,GO:0048265,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050951,GO:0050954,GO:0050955,GO:0050966,GO:0050968,GO:0050974,GO:0050982,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051209,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051259,GO:0051260,GO:0051262,GO:0051282,GO:0051283,GO:0051289,GO:0051480,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051930,GO:0051931,GO:0051969,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060089,GO:0060341,GO:0060401,GO:0060402,GO:0061178,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070417,GO:0070588,GO:0070838,GO:0070887,GO:0071241,GO:0071244,GO:0071310,GO:0071312,GO:0071313,GO:0071407,GO:0071415,GO:0071417,GO:0071466,GO:0071495,GO:0071840,GO:0071944,GO:0072347,GO:0072503,GO:0072507,GO:0072511,GO:0090087,GO:0090276,GO:0090277,GO:0097458,GO:0097553,GO:0097603,GO:0097604,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098862,GO:0098900,GO:0098908,GO:0099094,GO:0099604,GO:0120025,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903522,GO:1903530,GO:1903532,GO:1903793,GO:1904058,GO:1904951,GO:1990760
EggNOG free text desc.Transient receptor potential cation channel subfamily A member 1
EggNOG OGs35KDU@314146,38G7Q@33154,3BCDU@33208,3D0P6@33213,3J72R@40674,4896E@7711,491BV@7742,4M8KS@9443,COG0666@1,KOG0510@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-25_002160.1
COG Functional cat.S
Best tax levelPrimates
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.1888165-CDS-L-elsbetiae_contig15517:2089..24641622815634.1888165-CDS-L-elsbetiae_contig15517:2089..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15517 2090..2464 -
1691683004.3054066-CDS-L-elsbetiae_contig15517:2089..24641691683004.3054066-CDS-L-elsbetiae_contig15517:2089..2464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15517 2090..2464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15517.3880.1prot_L-elsbetiae_contig15517.3880.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15517 2090..2464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15517.3880.1

>prot_L-elsbetiae_contig15517.3880.1 ID=prot_L-elsbetiae_contig15517.3880.1|Name=mRNA_L-elsbetiae_contig15517.3880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MLVSYLQAMLAHDVGFAQLNLPFGEIQSTPLIVAAERGGHGVAEVLLNSG
ADPNMPNMNQVTPLHAAVTQGHYGCVTALLQHAGTNVNAKDWKGLTPIYL
AVQHRRTEMLEGLLARGANANMAPD
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mRNA from alignment at L-elsbetiae_contig15517:2090..2464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15517.3880.1 ID=mRNA_L-elsbetiae_contig15517.3880.1|Name=mRNA_L-elsbetiae_contig15517.3880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig15517:2090..2464- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGTATCGTACCTACAAGCTATGCTTGCACACGATGTGGGTTTCGC
CCAGCTCAACCTGCCCTTCGGCGAGATACAGAGCACACCGCTGATCGTCG
CGGCTGAGAGGGGGGGGCACGGTGTGGCCGAGGTGCTGCTGAACTCTGGC
GCAGATCCGAATATGCCGAATATGAATCAGGTCACACCCCTCCACGCGGC
TGTCACCCAAGGCCACTATGGGTGCGTGACGGCTCTCCTGCAGCACGCAG
GCACAAACGTAAACGCGAAAGATTGGAAAGGTCTTACTCCAATTTACCTG
GCTGTTCAGCATCGCCGCACCGAGATGCTGGAGGGGCTCCTGGCCCGAGG
AGCAAACGCGAACATGGCACCCGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15517:2090..2464-

>mRNA_L-elsbetiae_contig15517.3880.1 ID=mRNA_L-elsbetiae_contig15517.3880.1|Name=mRNA_L-elsbetiae_contig15517.3880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig15517:2090..2464- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGTATCGTACCTACAAGCTATGCTTGCACACGATGTGGGTTTCGC
CCAGCTCAACCTGCCCTTCGGCGAGATACAGAGCACACCGCTGATCGTCG
CGGCTGAGAGGGGGGGGCACGGTGTGGCCGAGGTGCTGCTGAACTCTGGC
GCAGATCCGAATATGCCGAATATGAATCAGGTCACACCCCTCCACGCGGC
TGTCACCCAAGGCCACTATGGGTGCGTGACGGCTCTCCTGCAGCACGCAG
GCACAAACGTAAACGCGAAAGATTGGAAAGGTCTTACTCCAATTTACCTG
GCTGTTCAGCATCGCCGCACCGAGATGCTGGAGGGGCTCCTGGCCCGAGG
AGCAAACGCGAACATGGCACCCGATATGTTGGTATCGTACCTACAAGCTA
TGCTTGCACACGATGTGGGTTTCGCCCAGCTCAACCTGCCCTTCGGCGAG
ATACAGAGCACACCGCTGATCGTCGCGGCTGAGAGGGGGGGGCACGGTGT
GGCCGAGGTGCTGCTGAACTCTGGCGCAGATCCGAATATGCCGAATATGA
ATCAGGTCACACCCCTCCACGCGGCTGTCACCCAAGGCCACTATGGGTGC
GTGACGGCTCTCCTGCAGCACGCAGGCACAAACGTAAACGCGAAAGATTG
GAAAGGTCTTACTCCAATTTACCTGGCTGTTCAGCATCGCCGCACCGAGA
TGCTGGAGGGGCTCCTGGCCCGAGGAGCAAACGCGAACATGGCACCCGAT
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