mRNA_L-elsbetiae_contig15500.3872.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15500.3872.1
Unique NamemRNA_L-elsbetiae_contig15500.3872.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15500.3872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15500contigL-elsbetiae_contig15500:1931..3517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15500.3872.1prot_L-elsbetiae_contig15500.3872.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15500 1986..3506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.3218281-UTR-L-elsbetiae_contig15500:1930..19851622815633.3218281-UTR-L-elsbetiae_contig15500:1930..1985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15500 1931..1985 -
1691683003.7984588-UTR-L-elsbetiae_contig15500:1930..19851691683003.7984588-UTR-L-elsbetiae_contig15500:1930..1985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15500 1931..1985 -
1622815633.368029-UTR-L-elsbetiae_contig15500:3506..35171622815633.368029-UTR-L-elsbetiae_contig15500:3506..3517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15500 3507..3517 -
1691683003.8338926-UTR-L-elsbetiae_contig15500:3506..35171691683003.8338926-UTR-L-elsbetiae_contig15500:3506..3517Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15500 3507..3517 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.3413246-CDS-L-elsbetiae_contig15500:1985..19981622815633.3413246-CDS-L-elsbetiae_contig15500:1985..1998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15500 1986..1998 -
1691683003.8072736-CDS-L-elsbetiae_contig15500:1985..19981691683003.8072736-CDS-L-elsbetiae_contig15500:1985..1998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15500 1986..1998 -
1622815633.3543355-CDS-L-elsbetiae_contig15500:3306..35061622815633.3543355-CDS-L-elsbetiae_contig15500:3306..3506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15500 3307..3506 -
1691683003.822573-CDS-L-elsbetiae_contig15500:3306..35061691683003.822573-CDS-L-elsbetiae_contig15500:3306..3506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15500 3307..3506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15500.3872.1

>prot_L-elsbetiae_contig15500.3872.1 ID=prot_L-elsbetiae_contig15500.3872.1|Name=mRNA_L-elsbetiae_contig15500.3872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
MLVTQHRASTTQETAHAAHSWSAEHPPNSMDKHGLRNWTKGTVGQAITGM
NQLVSAPGSQIVRTCLGNTK*
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mRNA from alignment at L-elsbetiae_contig15500:1931..3517-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15500.3872.1 ID=mRNA_L-elsbetiae_contig15500.3872.1|Name=mRNA_L-elsbetiae_contig15500.3872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1587bp|location=Sequence derived from alignment at L-elsbetiae_contig15500:1931..3517- (Laminarionema elsbetiae ELsaHSoW15)
CATGGTGATGTATGTTGGTCACACAGCACAGGGCCAGTACGACGCAGGAG
ACGGCTCATGCTGCCCATTCATGGAGCGCTGAGCATCCTCCAAACTCTAT
GGACAAGCACGGGCTAAGGAATTGGACCAAGGGCACCGTAGGGCAGGCGA
TCACCGGCATGAACCAGCTCGTTTCTGCGCCGGGGTCACAGATCGTCCGC
ACCTGTCTCGGGTAAGTGGCGTCCATCTATACACATCTGCAACGATGCAG
CAGTAGTTTCTGGCGTGATGTTGATAGAGTGAGATATCCATCTATAACTG
CGGCTGTATTTTAGCTTGTGAGCATGTCCGGCAGCAGCAGTTCATCAAAA
TGTACACCGATACATCAAGCGGATTGTTTGTCTTCGGGCGCCGCGACGGG
GTGAGTACTAACTTGTACCAGTACTAGGTGTGTCTCTTTCTATCGGTAGA
TATACACGTACGGTCCGTTCCTTCGCCAGCAACACTCTGTTATCGGCGCA
TTGATTCGGTTTCCTGTTTGTGTAAGAACTCCTTCCACGAGAAGCCCTGG
ACCCGTTGGTGTATTTATGAGAATAGAGTTGTCGTGCCAAATTACCGTAA
AAATCATGCTGCCCGCCCCCTCCGTACCCTCCTCTCCTCCTCGCCATCTC
TGACTACCAAATTTATCTGCTGCAACCCCGCTTTTTTCAAGAAAATGGGC
GACACCGGCTCAATATTTAAGCTGTGCTGCTGTGTGGAGCTCTGCTGCGG
TGCGAGCGGAAACCTTACGGCTGGGAAACTTTGGGTGGGGATGCGGTGCT
GTCGACCACCTCGAGGTGCGTCCAAGGCAGCAAGCACACCTCTCGTTGTC
ATTTCGCATGGGGATACTTAGATATTCGTCGTCGTTGTTGACTGGACGGA
CCAACGTTTTTTCTGCCAATAAGTTATACACCGACAGAGCAAAACGCGTC
CAGAAAAGAATGTGATGTGCTTGCATCATGATTCTCTCCGAAGCAATTGT
TGCTCCCTAGCGCTGGCCCCTCACACGGCCACTCGACAGTGCCACAGCAC
CGAGACATTAACATCCCTTGACAATCGAGGCGAGCCCAAGGTTTCACAGC
TTGGTGCTGGCAGAAACTGAGAGTCGTAACTCTGTGTGGGGATATTTGGG
GTGGTTTTGGCTCGGGTAGAGATGTTCCGAAAGTTGAAAGCTGCATTGAC
GTATTAAGTACGGATGCTAATATTTGCTTCCGAGGCCTTCCCTGGGCCTG
TGCCTCCCACTGCTGTCTGTGGAACATGTAGACTGGAGTCTTCCCACCGT
GTATGCAAAAACCGACTGGTAATCTTATGTTAATTTTGGACTAGCGTGGT
CGTCTTTCGCGCGGCAGCACAGGCTCGGAAGTACGGCTGGGTGCGACGAA
CCACCAATCTATACCGCAGGCCGATGCAAACGGAGGAGGGATGTACGTGA
TTGCTGCTCTAATCCCCCGCCATTTGTCTCCCTCCGCGCTGGCCGTGTGC
TCATCCTCGTGATCTCCAGCAACACCAAGTGAATTGGATGATCTTCGGCA
CTAAAGTCTTCGAGCATGGCGGAAGCGGAAGGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15500:1931..3517-

>mRNA_L-elsbetiae_contig15500.3872.1 ID=mRNA_L-elsbetiae_contig15500.3872.1|Name=mRNA_L-elsbetiae_contig15500.3872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig15500:1931..3517- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGTCACACAGCACAGGGCCAGTACGACGCAGGAGACGGCTCATGC
TGCCCATTCATGGAGCGCTGAGCATCCTCCAAACTCTATGGACAAGCACG
GGCTAAGGAATTGGACCAAGGGCACCGTAGGGCAGGCGATCACCGGCATG
AACCAGCTCGTTTCTGCGCCGGGGTCACAGATCGTCCGCACCTGTCTCGG
ATGTTGGTCACACAGCACAGGGCCAGTACGACGCAGGAGACGGCTCATGC
TGCCCATTCATGGAGCGCTGAGCATCCTCCAAACTCTATGGACAAGCACG
GGCTAAGGAATTGGACCAAGGGCACCGTAGGGCAGGCGATCACCGGCATG
AACCAGCTCGTTTCTGCGCCGGGGTCACAGATCGTCCGCACCTGTCTCGG
CAACACCAAGTGACAACACCAAGTGA
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