mRNA_L-elsbetiae_contig15418.3828.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI) HSP 1 Score: 133 bits (335), Expect = 1.370e-31 Identity = 87/171 (50.88%), Postives = 110/171 (64.33%), Query Frame = 2 Query: 479 MSIMVMLTSAGVVDA-GEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDRSGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKVRGSHATEEQLYRLEAIRRLLLREEAAHAISWLWPRGILSAAKAV 988 M IM +LT AGV DA G L+ A EA+V+FLL+QR++++ + + Y N D SG T L SI + +PR+VRLLVDAGADTTS +R+T+ GGV ++T LA T LREK V G ATEEQL+RL+AIRRLLLR +A HA+SWLWP S AV Sbjct: 5 MDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMS-VHAYANSSDGSGMTPLSCSIEWCSS-------GNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAV 167
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.770e-27 Identity = 86/174 (49.43%), Postives = 109/174 (62.64%), Query Frame = 2 Query: 452 LVAAAGMGCMSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDRSGCTALFRSINFRIKLGVVRGLAS--PRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKVR-GSHATEEQLYRLEAIRRLLLREEAAHAISWLWPRG 964 L AA + IM +LT AGVVD G+AL AA HEA+VKFLL+ R ++ Y+N RD +G T L + +G S PR+VR+LVDAGADTTS +++ + GGV ++T LAFT RLR+K V G AT+E L RLEAI RLLLR +A HA+SWLWP G Sbjct: 316 LAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPL---------VVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSG 480
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 123 bits (309), Expect = 1.740e-26 Identity = 79/160 (49.38%), Postives = 103/160 (64.38%), Query Frame = 2 Query: 479 MSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDRSGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKVRGSHATEEQLYRLEAIRRLLLREEAAHAISWLWP 958 ++ M +LT AGVVD G+AL +A EA+VK+LLQ + P YVNVRDR+G T L SI GV + PRV RLLV+AGADTT+ LR T++ G V T L T L++KKV G++ ++++L+RLE IRRLLL+ EA HA SWLWP Sbjct: 216 VAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPGA---YVNVRDRNGTTPLLSSIYV---CGVDEQSSFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWP 369
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 119 bits (298), Expect = 5.320e-25 Identity = 90/190 (47.37%), Postives = 114/190 (60.00%), Query Frame = 2 Query: 452 LVAAAGMGCMSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDRSGCTALFRSI-NFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREK-KVRG-SHATEEQLYRLEAIRRLLLREEAAHAISWLWPRGI--LSAAKAVGDTKTT 1006 L AA ++IMV+LT+AGVVD G ALV AA E +KFLL+Q + + YVN RDR G T L I ++R PRVVRLLV+AGADTTS + + + GG + T L T +R+K KV G A+ EQL++LEAIRRLLLR EA HA+SWLWP I ++ A A G +TT Sbjct: 224 LQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARKTMDEAA-YVNTRDRGGVTPLLWGIQHYR-----------PRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAARGTDRTT 401
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 115 bits (288), Expect = 1.130e-23 Identity = 82/179 (45.81%), Postives = 98/179 (54.75%), Query Frame = 2 Query: 479 MSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVN-VRDRSGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKVRGSHATEEQLYRLEAIRRLLLREEAAHAISWLWPRGILSAAKAVGDTKTTKT 1012 M +M+ LT+AGVVD G ALV A H VKFLLQQ Q P+ YV+ RD G T L +I+ + SP+VVRLLVDAGADTTS +R T PG + T L+ + LR K +E L RLE IRRLLLR EA HA SWLW G+ G T T+T Sbjct: 230 MDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQ--QNGTPSEKSAYVSRPRDPCGRTPLICNIDVGLNQS-----CSPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATET 401
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 114 bits (285), Expect = 2.510e-23 Identity = 83/174 (47.70%), Postives = 105/174 (60.34%), Query Frame = 2 Query: 491 VMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVN-VRDRSGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTD-APGGVNDHNTALAFTNKRLREKKVRGSHATEEQLYRLEAIRRLLLREEAAHAISWLWPRGILSA-AKAVGDTKT 1003 V+L + GVVD G AL+ AA+ AVKFLL++RQ A YVN RD G T + +++ +G R L SP++VRLLVDAGA+TT A+ +T P T LAFT + LRE +V G AT+EQL RL+ R LL R EA HA+SWLW G A+A GDTKT Sbjct: 234 VLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADADA-----YVNGTRDPYGRTPVMCAVD----VGAGR-LCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKT 397
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 113 bits (282), Expect = 3.130e-23 Identity = 82/173 (47.40%), Postives = 105/173 (60.69%), Query Frame = 2 Query: 452 LVAAAGMGCMSIMVMLTSAGVVD-AGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDR--SGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKV-RGSHATEEQLYRLEAIRRLLLREEAAHAISWLWP 958 L+ AA + + +LT AG VD +G AL+ AA EA+ K L+QR ++ G V Y ++ DR SG TAL SI + +PR+VRLL++AGADTTS +R T++ G V + T LA T L EK + G ATEE L RLEAIRRLLLR EA HA+SWLWP Sbjct: 207 LLLAASKRDLDTLAILTGAGAVDTSGSALMCAA----EASFKHFLRQRLKEEK--GGVEYASINDRISSGLTALVFSIQRCLS-------QTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWP 366
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7FY91_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY91_ECTSI) HSP 1 Score: 110 bits (274), Expect = 1.250e-21 Identity = 76/162 (46.91%), Postives = 94/162 (58.02%), Query Frame = 2 Query: 479 MSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDRSGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKVRGSHATEEQLYRLEAIRRLLLREEAAHAISWLWPRG 964 + I+ ML AGVVD G AL +AA +EA+VKFLL+Q + K + YVN +R G T L +I G S R+VRLLVDAGADTT+A RLT G T L L EKK +G T E+ + L+A RLLL+ EAAHAISW+WP G Sbjct: 234 VGIVAMLAHAGVVDQGSALAAAAAQGYEASVKFLLRQHEGKHSASRSA-YVNKLNRFGLTPLLENITC--------GHCSARIVRLLVDAGADTTAAYRLTGKKGQAMAATTHLTAMGCLLLEKKAKGD--TGEEPHNLQATFRLLLQVEAAHAISWVWPTG 384
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.740e-20 Identity = 85/190 (44.74%), Postives = 107/190 (56.32%), Query Frame = 2 Query: 452 LVAAAGMGCMSIMVMLTSAGVVD-AGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNV-RDRSGCTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNK-RLREKKVRGSH-ATEEQLYRLEAIRRLLLREEAAHAISWLWPRGILSAAKAVGDTKTTK 1009 L AA G + IM ML AGVVD G AL++A EAAV FLL+Q++++ + YVN+ RD G TAL S FR G +PR+ R LVDAGADTTSA++L + T L + N LRE G H AT+EQL RLEA RR+LLR A HA+SW+WP A+ +T K Sbjct: 194 LRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQTS----YVNIARDDDGLTALLWS--FR---GNKNKPCNPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRE--TNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRTAK 372
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Match: D7FXH6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH6_ECTSI) HSP 1 Score: 105 bits (261), Expect = 4.270e-20 Identity = 84/181 (46.41%), Postives = 101/181 (55.80%), Query Frame = 2 Query: 461 AAGMGCMSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLVRYVNVRDRSG-CTALFRSINFRIKLGVVRGLASPRVVRLLVDAGADTTSALRLTDAPGGVNDHNTALAFTNKRLREKKVRGSHATEEQLYRLEAIRRLLLREEAAHAISWLWPRGILSAAKAVGDTK 1000 AA + MSIM LT AGVVD G AL + A EA VKFLLQQ+ P G YVN R R+ T LF +I ASPRVVR+L+DAGAD TS L PGG++ + L+ +R K + ATEEQL L+AIRRLLLR EA +A SWLW I A A + + Sbjct: 279 AAWVQHMSIMTALTDAGVVDTGTALFNVAAKGLEAPVKFLLQQKWNT--PGGA--YVNTRSRNAKFTPLFIAIEG----------ASPRVVRMLLDAGADVTSTCSL---PGGIS--RSPLSQCESNIRSKFCQALPATEEQLNGLQAIRRLLLRVEAIYASSWLWCSNIPCIAPAAREVE 440 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15418.3828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15418.3828.1 >prot_L-elsbetiae_contig15418.3828.1 ID=prot_L-elsbetiae_contig15418.3828.1|Name=mRNA_L-elsbetiae_contig15418.3828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp MGCMSIMVMLTSAGVVDAGEALVSAAKGCHEAAVKFLLQQRQQKAPPTGLback to top mRNA from alignment at L-elsbetiae_contig15418:679..3361- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15418.3828.1 ID=mRNA_L-elsbetiae_contig15418.3828.1|Name=mRNA_L-elsbetiae_contig15418.3828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2683bp|location=Sequence derived from alignment at L-elsbetiae_contig15418:679..3361- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15418:679..3361- >mRNA_L-elsbetiae_contig15418.3828.1 ID=mRNA_L-elsbetiae_contig15418.3828.1|Name=mRNA_L-elsbetiae_contig15418.3828.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig15418:679..3361- (Laminarionema elsbetiae ELsaHSoW15)back to top |