mRNA_L-elsbetiae_contig15414.3826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15414.3826.1
Unique NamemRNA_L-elsbetiae_contig15414.3826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15414.3826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15414contigL-elsbetiae_contig15414:683..1490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size808
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15414.3826.1prot_L-elsbetiae_contig15414.3826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15414 848..1288 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.0359595-UTR-L-elsbetiae_contig15414:682..8471622815629.0359595-UTR-L-elsbetiae_contig15414:682..847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15414 683..847 +
1691683001.0547838-UTR-L-elsbetiae_contig15414:682..8471691683001.0547838-UTR-L-elsbetiae_contig15414:682..847Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15414 683..847 +
1622815629.0578215-UTR-L-elsbetiae_contig15414:1288..14901622815629.0578215-UTR-L-elsbetiae_contig15414:1288..1490Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15414 1289..1490 +
1691683001.0749562-UTR-L-elsbetiae_contig15414:1288..14901691683001.0749562-UTR-L-elsbetiae_contig15414:1288..1490Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15414 1289..1490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.0467026-CDS-L-elsbetiae_contig15414:847..12881622815629.0467026-CDS-L-elsbetiae_contig15414:847..1288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15414 848..1288 +
1691683001.066121-CDS-L-elsbetiae_contig15414:847..12881691683001.066121-CDS-L-elsbetiae_contig15414:847..1288Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15414 848..1288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15414.3826.1

>prot_L-elsbetiae_contig15414.3826.1 ID=prot_L-elsbetiae_contig15414.3826.1|Name=mRNA_L-elsbetiae_contig15414.3826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
MFPVKKMGVKTVKRIPTPIETAVPITCSDCTDFKEEEIRTSSLFPATSTT
WSTLNSVCFLAFSCTPRIPTRASPWSQRQCWSHQKIRKNTRAPDKRKRTL
KADEAILTSDKNKFHVLYSLNHASTNLHPTTTVVQQILHSLPPVRP*
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mRNA from alignment at L-elsbetiae_contig15414:683..1490+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15414.3826.1 ID=mRNA_L-elsbetiae_contig15414.3826.1|Name=mRNA_L-elsbetiae_contig15414.3826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=808bp|location=Sequence derived from alignment at L-elsbetiae_contig15414:683..1490+ (Laminarionema elsbetiae ELsaHSoW15)
ACAGCAGGAGCGTTGCATAATAGCTTTCGATCTGGAGAACTTCGTGTTTT
CAAACCGTCTCAAAATGTCCAATTTTCTGTCAATCTGGTCGGGTTTTGCT
GAACGAATAGAGGCACGCACGCCTTGCGAACCAGCTCAAACAGCAGACAC
GCGAAGATAGCCAGGATGTTTCCCGTCAAGAAAATGGGGGTCAAGACAGT
CAAACGGATTCCGACACCCATAGAAACTGCGGTGCCAATCACGTGTTCTG
ATTGTACTGATTTCAAAGAGGAAGAAATCAGAACCAGCAGTCTATTCCCC
GCAACTTCAACTACGTGGTCCACCCTTAATAGTGTGTGTTTTCTCGCATT
TAGCTGTACCCCAAGAATACCGACTCGTGCAAGCCCGTGGTCTCAAAGGC
AGTGCTGGAGCCATCAGAAGATCCGAAAGAACACGCGTGCACCAGACAAG
CGTAAGCGTACACTGAAGGCCGACGAGGCAATCCTAACTTCCGATAAAAA
CAAATTCCATGTGTTGTATTCACTGAACCACGCATCCACAAATCTCCATC
CGACTACTACTGTTGTACAGCAGATACTACACAGTCTCCCCCCCGTTCGC
CCCTAACCGATGCACGGTTGCCGGCTACAGCAGGATACATTTTCTGATTT
ATGTCTGCACAAAAATACACGGGTCGCGGTGGATACGGGAAGGGAACGCA
ATCGCTGTCTGAAGTGCTTGTCGCGCTTGTGTCGCGTGTCGAGGGGAGTG
GCGGGCTCCAGACTATTGTCTTCCATCTGATTTCGTCGATCGGGGACACT
ACTGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15414:683..1490+

>mRNA_L-elsbetiae_contig15414.3826.1 ID=mRNA_L-elsbetiae_contig15414.3826.1|Name=mRNA_L-elsbetiae_contig15414.3826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig15414:683..1490+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCCCGTCAAGAAAATGGGGGTCAAGACAGTCAAACGGATTCCGAC
ACCCATAGAAACTGCGGTGCCAATCACGTGTTCTGATTGTACTGATTTCA
AAGAGGAAGAAATCAGAACCAGCAGTCTATTCCCCGCAACTTCAACTACG
TGGTCCACCCTTAATAGTGTGTGTTTTCTCGCATTTAGCTGTACCCCAAG
AATACCGACTCGTGCAAGCCCGTGGTCTCAAAGGCAGTGCTGGAGCCATC
AGAAGATCCGAAAGAACACGCGTGCACCAGACAAGCGTAAGCGTACACTG
AAGGCCGACGAGGCAATCCTAACTTCCGATAAAAACAAATTCCATGTGTT
GTATTCACTGAACCACGCATCCACAAATCTCCATCCGACTACTACTGTTG
TACAGCAGATACTACACAGTCTCCCCCCCGTTCGCCCCTAAATGTTTCCC
GTCAAGAAAATGGGGGTCAAGACAGTCAAACGGATTCCGACACCCATAGA
AACTGCGGTGCCAATCACGTGTTCTGATTGTACTGATTTCAAAGAGGAAG
AAATCAGAACCAGCAGTCTATTCCCCGCAACTTCAACTACGTGGTCCACC
CTTAATAGTGTGTGTTTTCTCGCATTTAGCTGTACCCCAAGAATACCGAC
TCGTGCAAGCCCGTGGTCTCAAAGGCAGTGCTGGAGCCATCAGAAGATCC
GAAAGAACACGCGTGCACCAGACAAGCGTAAGCGTACACTGAAGGCCGAC
GAGGCAATCCTAACTTCCGATAAAAACAAATTCCATGTGTTGTATTCACT
GAACCACGCATCCACAAATCTCCATCCGACTACTACTGTTGTACAGCAGA
TACTACACAGTCTCCCCCCCGTTCGCCCCTAA
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