mRNA_L-elsbetiae_contig15410.3825.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15410.3825.1
Unique NamemRNA_L-elsbetiae_contig15410.3825.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15410.3825.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.230e-59
Identity = 122/325 (37.54%), Postives = 169/325 (52.00%), Query Frame = 1 
Query:    1 EPKSGTGFTHQWASGLLHHACDFLQRAFGENTCGMSWES------ENPELPSAFT------------NRSLSFDPRLGGADAPCRCHNVDRVLISVSKREKHTLPVDLSCRWWRPNRIVGHGTSGDFGCSTFKSSAVANYSDLVGCMQEAACPITDNRQQLVILRDPRAVAVSSFYH-RRNYNVIPPHTT---LEEYVPKILAGICKWTSIRYVLFSGLLRENSTVFWYDDSVARPLAWHRAFSDAVGLHLPASVVEGAVDAALRGHFDFNSKRMDVHGESSKEQVVSGRTWRDEVGGDPRFVAE-LDAILRVWLPPVLLAKWGL 906
            EPKSGT F  +WA   L   C+ L R +GE TC   W        + P  P                NR        G + +PC C  VD+V I VS   KH LPV  SC W   + +    T  + GC+T     V NY+D V C+Q+  C I D+R Q++ILRDPRAVAVSSF+H + +++    H T   ++ +V ++L  IC +  +RY++    L   +  F YD+S+A PL WH+ +  +VGL  P  VV  A + +LR  + F  K +D H     ++    RTW DE+  D   VAE L+ I R WLPPVLL K+G+
Sbjct:  107 EPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNV----TPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKH--PGGKEATEKRTWEDEISHD---VAEQLEGICREWLPPVLLEKFGI 422
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BLAST of mRNA_L-elsbetiae_contig15410.3825.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.900e-47
Identity = 94/232 (40.52%), Postives = 136/232 (58.62%), Query Frame = 1 
Query:  217 RVLISVSKREKHTLPVDLSCRWWRPNRIVGHGTSGDFGCSTFKSSAVANYSDLVGCMQEAACPITDNRQQLVILRDPRAVAVSSFYHR--RNYNVIPPHTTLEEYVPKILAGICKWTSIRYVLFSGLLRENSTVFWYDDSVARPLAWHRAFSDAVGLHLPASVVEGAVDAALRGHFDFNSKRMDVHGESSKEQVVSGRTWRDEVGGDPRFVAELDAILRVWLPPVLLAKWGL 906
            RV IS+S  +KH LPV+ SC W   +  V  G     GC +F    V   +DL  CMQ+  C ITDNR Q V +RDPRAVAVS+++HR  ++ N    H +L++ V +IL  +C +T++R++LF GLL   + +FWY+ +V  P  WH  ++   GL LP   ++G V A  + H     K ++ H   +  +    RTW+DEV   P    E+D+ILR WLP VLLA++G+
Sbjct:    4 RVEISISTVDKHRLPVNESCPWSHGSGTVHEGD----GCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNYQKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMV-AENQAH-----KHLNPHPGGA--ETSDNRTWQDEVS--PGIRPEMDSILRKWLPGVLLARYGI 221
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BLAST of mRNA_L-elsbetiae_contig15410.3825.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.300e-28
Identity = 67/175 (38.29%), Postives = 104/175 (59.43%), Query Frame = 1 
Query:  406 ITDNRQQLVILRDPRAVAVSSFYHRRNYNV-----IPPHTTLEEYVPKILAGICKWTSIRYVLFSGLLRENSTVFWYDDSVARPLAWHRAFSDAVGLHLPASVVEGAVDAALRGHFDFNSK-RMDVHGESSKEQVVSGRTWRDEVGGDPRFVAELDAILRVWLPPVLLAKWGLAL 912
            + D+  Q  +LRDPRAVAVS++++ +++       +    +L+E V  IL  +C++T+IR++LF G L + S +FWY+D++  PL WH  ++   G  LPAS ++  +DA L    +   K + D H     +QV S RTW DE+   P    E+D+ILR WLP VLL + G+ L
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKD-IDATLP---EAQQKVKRDPH--PGGQQVSSKRTWEDEIS--PAIREEMDSILRTWLPGVLLERLGIPL 191
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BLAST of mRNA_L-elsbetiae_contig15410.3825.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.470e-25
Identity = 61/159 (38.36%), Postives = 96/159 (60.38%), Query Frame = 1 
Query:  436 LRDPRAVAVSSFYHRRNYNVIPPHTT----LEEYVPKILAGICKWTSIRYVLFSGLLRENSTVFWYDDSVARPLAWHRAFSDAVGLHLPASVVEGAVDAALRGHFDFNSKRMDVHGESSKEQVVSGRTWRDEVGGDPRFVAELDAILRVWLPPVLLAKW 900
            +RDPRAVAVS++++ +   +   H +    L+E V  IL  IC++T+IR++LF G L + S +FWY+D++  PL W+  ++   G  LPA  ++  + A+L    + + KR    G    + V S RTW DEV  + R   E+++ILR WLP VLLA++
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKD-IQASLTEAAENDRKREPHPGG---QVVSSDRTWEDEVSPETRL--EMNSILRTWLPGVLLARF 153
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BLAST of mRNA_L-elsbetiae_contig15410.3825.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.950e-14
Identity = 39/108 (36.11%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:  577 LFSGLLRENSTVFWYDDSVARPLAWHRAFSDAVGLHLPASVVEGAVDAALRGHFDFNSKRMDVHGESSKEQVVSGRTWRDEVGGDPRFVAELDAILRVWLPPVLLAKW 900
            +F GLL + S +FWY++++  P AWH  ++   GL LP + ++G V          N +R+  +      +  + RTWRDEV   P    ++++ILR WLPPVLLA++
Sbjct:    1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMVAV--------NQERLFFNRHPGGGKRTAKRTWRDEVS--PGIHHDMESILRKWLPPVLLARF 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15410.3825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJE4_ECTSI1.230e-5937.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDV7_9PHAE2.900e-4740.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE3.300e-2838.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI3.470e-2538.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUF6_ECTSI1.950e-1436.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15410contigL-elsbetiae_contig15410:538..2951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size921
Cds size921
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15410.3825.1prot_L-elsbetiae_contig15410.3825.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15410 538..2951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.9629292-CDS-L-elsbetiae_contig15410:537..10461622815628.9629292-CDS-L-elsbetiae_contig15410:537..1046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15410 538..1046 -
1691683001.019722-CDS-L-elsbetiae_contig15410:537..10461691683001.019722-CDS-L-elsbetiae_contig15410:537..1046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15410 538..1046 -
1622815628.9785337-CDS-L-elsbetiae_contig15410:2037..22311622815628.9785337-CDS-L-elsbetiae_contig15410:2037..2231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15410 2038..2231 -
1691683001.0308273-CDS-L-elsbetiae_contig15410:2037..22311691683001.0308273-CDS-L-elsbetiae_contig15410:2037..2231Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15410 2038..2231 -
1622815628.999331-CDS-L-elsbetiae_contig15410:2733..29511622815628.999331-CDS-L-elsbetiae_contig15410:2733..2951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15410 2734..2951 -
1691683001.042388-CDS-L-elsbetiae_contig15410:2733..29511691683001.042388-CDS-L-elsbetiae_contig15410:2733..2951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15410 2734..2951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15410.3825.1

>prot_L-elsbetiae_contig15410.3825.1 ID=prot_L-elsbetiae_contig15410.3825.1|Name=mRNA_L-elsbetiae_contig15410.3825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=307bp
EPKSGTGFTHQWASGLLHHACDFLQRAFGENTCGMSWESENPELPSAFTN
RSLSFDPRLGGADAPCRCHNVDRVLISVSKREKHTLPVDLSCRWWRPNRI
VGHGTSGDFGCSTFKSSAVANYSDLVGCMQEAACPITDNRQQLVILRDPR
AVAVSSFYHRRNYNVIPPHTTLEEYVPKILAGICKWTSIRYVLFSGLLRE
NSTVFWYDDSVARPLAWHRAFSDAVGLHLPASVVEGAVDAALRGHFDFNS
KRMDVHGESSKEQVVSGRTWRDEVGGDPRFVAELDAILRVWLPPVLLAKW
GLALAV*
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mRNA from alignment at L-elsbetiae_contig15410:538..2951-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15410.3825.1 ID=mRNA_L-elsbetiae_contig15410.3825.1|Name=mRNA_L-elsbetiae_contig15410.3825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2414bp|location=Sequence derived from alignment at L-elsbetiae_contig15410:538..2951- (Laminarionema elsbetiae ELsaHSoW15)
GAGCCAAAATCAGGCACGGGGTTCACCCACCAGTGGGCCAGCGGGCTGCT
CCACCACGCCTGCGACTTCCTGCAGCGCGCTTTCGGCGAGAACACGTGCG
GCATGTCCTGGGAGAGTGAGAACCCGGAGCTGCCCAGCGCTTTCACCAAC
CGCTCCCTGTCCTTCGACCCGCGTCTGGGGGGGGCGGACGCGCCCTGCCG
GTGCCACAACGTTGACCGGTGACAAAAAAAATATAGAAGTATATATATAT
AATAATAAAGGGGTAGGATATCCCTGGAGGGGGGGTATACTGTAGCCTAT
ATAATTTCTAGTGGGGGGGGGCGCAGATTACAGTGGGCGTGGTGGGGGGG
GGATAGGAGTTGAATAACCCCGAACGGATCCCCCGATACTAATTCCTTCA
AAGACAATAATCGAAAATCTACATGCAGTACCGGCCCGCTAGTACGAACG
CTCCGAGTGAGAAAGGTCAGCCGGAGACTCTCAAACTACTACATATCCGC
GGAATATCTTCGCTTGGTGTTTTTCAGCGTGTGTCCTTACCGGTACATGC
ATGCTGTACGATCATCATGTCGGTTCCACCCCAGGGAACGCGAACCTGGC
GACGCTCGCTCTCGCTTTCTAAATTAAATACACACACACACACACACACC
GCTCGCTCGCTCACTGCGTAGTATGCACGCGTGTTTTGCGTTGCGTGCGT
TGCCAACGACGGAACCGCAGGGTACTGATAAGCGTCTCCAAGCGAGAGAA
GCACACATTGCCGGTGGATCTTTCCTGCCGCTGGTGGCGCCCCAACAGGA
TAGTCGGCCACGGTACGAGCGGCGACTTCGGCTGCAGCACTTTCAAGAGC
TCGGCGGTGGCGAACTACAGCGACCTCGTCGGCTGCATGCAGGAAGCAGC
GTGTCCGATCACAGGTGTGCAAGAAAAAAAAGGCCCGAAACAAGCAACCT
CCGAGCGCGCAAGAGCAGTCAGTTATTCATCAGCGAGCTGCTATTTTCGC
GGGGCCCCTCCTCTTGGTGTAGAAAATGCCAAGCAAGACGGCGTCGTCGA
CTTAGGGGTCCCCGAATTTCCGCGGGGTATGTACGTACGTACGACGAGTT
GAGTCTGACTGGCCTTTGGCGGTAGGGGGGGGGACTGTTATTTCGCAGCG
AAAGAGTGCGGGCGCGGCGGCGGGGGTGTAGGATCGTGGCGAAACGCCTT
GGGTTTTCAGAAAAAGTCGGTACCGCCACCAAACACCACCACCGCGCCTT
GCTCGGAATACAAATATTTTCGTGACAAAAAGCCAATGAATTTGTTTTTC
TGCGGGTGTTTCTGTTTTTTTTTTTGGCCTCGGGAAGACTTTACGCGTTG
TTGTTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACT
CGGTTGGAACAATACCAGTGTGTCGGGGTAAACTCCTTAAATTTGGACCA
AGCAGCGGTTGTTGTGGTTGTAGGCACCCAACCCCCTCCTCCTGGCCTGG
CGGCCACAGTAGTAGCCCCTCCCGTGGATGCATAGGTCTGCTGCATTTGA
TCCTTGCCGTCATCCTAGCGACTGGTCCGGCGTAAACGCGGACATTATTA
CTGCAGGCGATGATGCTCCCGCGAAAAAGAACCCCGCATTTATGCCCCCG
AAGTATTGCACATGTATTTCAAGTGTCCAGTTATCAGCTTGCTGTATTGT
ACATGTGTTTCGAGTGTCCAGTTATCAGGTTGTTGTCCGAAAAAGCGGAC
GCGCGGGTCTGTAACCTCTTAAAAAACACGAAAACGAAGCCTTGTGCATT
TTTTTTTCCTTTTTCCCGCCGCCGCCGCCAGCCCCAAAGCCCCACGCCCC
GTCGGCCTATCTTCCGCTGAACATCGCTTGTTCCTGCTGCCGTGTAAAAA
TGCAGACAACCGCCAACAGCTGGTGATCCTGCGCGACCCGAGAGCAGTCG
CCGTCAGCAGCTTCTACCACCGGAGGAACTACAACGTGATACCCCCGCAC
ACCACCCTCGAGGAGTACGTGCCGAAGATACTCGCCGGCATCTGCAAGTG
GACCTCCATCCGCTACGTCCTCTTCTCCGGCCTGCTGCGAGAGAACTCCA
CCGTCTTCTGGTACGACGACTCCGTGGCCCGACCTCTTGCCTGGCACCGC
GCCTTCTCGGACGCGGTCGGGCTGCACCTGCCGGCGTCGGTGGTCGAGGG
GGCCGTCGACGCCGCCCTGCGGGGCCACTTCGACTTCAACTCGAAGCGCA
TGGACGTCCACGGCGAGTCGTCCAAGGAGCAGGTCGTGTCGGGGCGGACC
TGGAGGGACGAGGTCGGGGGGGACCCGCGCTTCGTCGCGGAGCTCGACGC
CATCTTGAGGGTGTGGCTGCCTCCGGTGCTGCTGGCGAAGTGGGGGCTGG
CGTTGGCGGTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15410:538..2951-

>mRNA_L-elsbetiae_contig15410.3825.1 ID=mRNA_L-elsbetiae_contig15410.3825.1|Name=mRNA_L-elsbetiae_contig15410.3825.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1842bp|location=Sequence derived from alignment at L-elsbetiae_contig15410:538..2951- (Laminarionema elsbetiae ELsaHSoW15)
GAGCCAAAATCAGGCACGGGGTTCACCCACCAGTGGGCCAGCGGGCTGCT
CCACCACGCCTGCGACTTCCTGCAGCGCGCTTTCGGCGAGAACACGTGCG
GCATGTCCTGGGAGAGTGAGAACCCGGAGCTGCCCAGCGCTTTCACCAAC
CGCTCCCTGTCCTTCGACCCGCGTCTGGGGGGGGCGGACGCGCCCTGCCG
GTGCCACAACGTTGACCGGAGCCAAAATCAGGCACGGGGTTCACCCACCA
GTGGGCCAGCGGGCTGCTCCACCACGCCTGCGACTTCCTGCAGCGCGCTT
TCGGCGAGAACACGTGCGGCATGTCCTGGGAGAGTGAGAACCCGGAGCTG
CCCAGCGCTTTCACCAACCGCTCCCTGTCCTTCGACCCGCGTCTGGGGGG
GGCGGACGCGCCCTGCCGGTGCCACAACGTTGACCGGGTACTGATAAGCG
TCTCCAAGCGAGAGAAGCACACATTGCCGGTGGATCTTTCCTGCCGCTGG
TGGCGCCCCAACAGGATAGTCGGCCACGGTACGAGCGGCGACTTCGGCTG
CAGCACTTTCAAGAGCTCGGCGGTGGCGAACTACAGCGACCTCGTCGGCT
GCATGCAGGAAGCAGCGTGTCCGATCACAGGGTACTGATAAGCGTCTCCA
AGCGAGAGAAGCACACATTGCCGGTGGATCTTTCCTGCCGCTGGTGGCGC
CCCAACAGGATAGTCGGCCACGGTACGAGCGGCGACTTCGGCTGCAGCAC
TTTCAAGAGCTCGGCGGTGGCGAACTACAGCGACCTCGTCGGCTGCATGC
AGGAAGCAGCGTGTCCGATCACAGACAACCGCCAACAGCTGGTGATCCTG
CGCGACCCGAGAGCAGTCGCCGTCAGCAGCTTCTACCACCGGAGGAACTA
CAACGTGATACCCCCGCACACCACCCTCGAGGAGTACGTGCCGAAGATAC
TCGCCGGCATCTGCAAGTGGACCTCCATCCGCTACGTCCTCTTCTCCGGC
CTGCTGCGAGAGAACTCCACCGTCTTCTGGTACGACGACTCCGTGGCCCG
ACCTCTTGCCTGGCACCGCGCCTTCTCGGACGCGGTCGGGCTGCACCTGC
CGGCGTCGGTGGTCGAGGGGGCCGTCGACGCCGCCCTGCGGGGCCACTTC
GACTTCAACTCGAAGCGCATGGACGTCCACGGCGAGTCGTCCAAGGAGCA
GGTCGTGTCGGGGCGGACCTGGAGGGACGAGGTCGGGGGGGACCCGCGCT
TCGTCGCGGAGCTCGACGCCATCTTGAGGGTGTGGCTGCCTCCGGTGCTG
CTGGCGAAGTGGGGGCTGGCGTTGGCGGTGTAAACAACCGCCAACAGCTG
GTGATCCTGCGCGACCCGAGAGCAGTCGCCGTCAGCAGCTTCTACCACCG
GAGGAACTACAACGTGATACCCCCGCACACCACCCTCGAGGAGTACGTGC
CGAAGATACTCGCCGGCATCTGCAAGTGGACCTCCATCCGCTACGTCCTC
TTCTCCGGCCTGCTGCGAGAGAACTCCACCGTCTTCTGGTACGACGACTC
CGTGGCCCGACCTCTTGCCTGGCACCGCGCCTTCTCGGACGCGGTCGGGC
TGCACCTGCCGGCGTCGGTGGTCGAGGGGGCCGTCGACGCCGCCCTGCGG
GGCCACTTCGACTTCAACTCGAAGCGCATGGACGTCCACGGCGAGTCGTC
CAAGGAGCAGGTCGTGTCGGGGCGGACCTGGAGGGACGAGGTCGGGGGGG
ACCCGCGCTTCGTCGCGGAGCTCGACGCCATCTTGAGGGTGTGGCTGCCT
CCGGTGCTGCTGGCGAAGTGGGGGCTGGCGTTGGCGGTGTAA
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