mRNA_L-elsbetiae_contig15406.3820.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15406.3820.1
Unique NamemRNA_L-elsbetiae_contig15406.3820.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15406.3820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15406contigL-elsbetiae_contig15406:916..1397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15406.3820.1prot_L-elsbetiae_contig15406.3820.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15406 1084..1392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.599547-UTR-L-elsbetiae_contig15406:915..10831622815628.599547-UTR-L-elsbetiae_contig15406:915..1083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15406 916..1083 +
1691683000.8424587-UTR-L-elsbetiae_contig15406:915..10831691683000.8424587-UTR-L-elsbetiae_contig15406:915..1083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15406 916..1083 +
1622815628.6224506-UTR-L-elsbetiae_contig15406:1392..13971622815628.6224506-UTR-L-elsbetiae_contig15406:1392..1397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15406 1393..1397 +
1691683000.8696663-UTR-L-elsbetiae_contig15406:1392..13971691683000.8696663-UTR-L-elsbetiae_contig15406:1392..1397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15406 1393..1397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.6120608-CDS-L-elsbetiae_contig15406:1083..13921622815628.6120608-CDS-L-elsbetiae_contig15406:1083..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15406 1084..1392 +
1691683000.854955-CDS-L-elsbetiae_contig15406:1083..13921691683000.854955-CDS-L-elsbetiae_contig15406:1083..1392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15406 1084..1392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15406.3820.1

>prot_L-elsbetiae_contig15406.3820.1 ID=prot_L-elsbetiae_contig15406.3820.1|Name=mRNA_L-elsbetiae_contig15406.3820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MQRRTPRCGYPLLRDAGWYVYLVSCTDRHISQRVGALTPKCVGGCAPKDD
KADKARGDEKCSKYLDEYQTVRPKENDFIFSAIKVTAGTDSMSNQLKYNE
RI*
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mRNA from alignment at L-elsbetiae_contig15406:916..1397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15406.3820.1 ID=mRNA_L-elsbetiae_contig15406.3820.1|Name=mRNA_L-elsbetiae_contig15406.3820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=482bp|location=Sequence derived from alignment at L-elsbetiae_contig15406:916..1397+ (Laminarionema elsbetiae ELsaHSoW15)
CGGATTTTGTGTCTGTAGTCTGGACGGTGAGCGAGGTTTAGTATGTCTTT
AACAGTCCCCCTGGAACGACTTTTTCAAAGGTTGGACGTAAGCCGCTAAC
GTTTTGTACAAGAACATTTATTACAAAATTAGGCAAGCAACGCAAGAGGT
AGTGGGACAAAAAACAAAATGCAAAGACGAACCCCCCGGTGTGGATATCC
CCTCCTGCGTGACGCTGGCTGGTACGTCTATCTAGTCAGTTGTACAGATA
GGCATATATCGCAACGTGTAGGTGCACTTACACCGAAATGTGTGGGTGGA
TGCGCACCGAAAGATGACAAGGCAGACAAAGCCAGAGGGGACGAAAAATG
CTCCAAATATCTTGACGAGTATCAAACAGTCCGACCAAAAGAGAATGACT
TTATATTTTCAGCTATAAAAGTGACCGCTGGAACTGATTCTATGTCCAAC
CAACTGAAGTACAACGAACGTATTTAAGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15406:916..1397+

>mRNA_L-elsbetiae_contig15406.3820.1 ID=mRNA_L-elsbetiae_contig15406.3820.1|Name=mRNA_L-elsbetiae_contig15406.3820.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig15406:916..1397+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAAGACGAACCCCCCGGTGTGGATATCCCCTCCTGCGTGACGCTGG
CTGGTACGTCTATCTAGTCAGTTGTACAGATAGGCATATATCGCAACGTG
TAGGTGCACTTACACCGAAATGTGTGGGTGGATGCGCACCGAAAGATGAC
AAGGCAGACAAAGCCAGAGGGGACGAAAAATGCTCCAAATATCTTGACGA
GTATCAAACAGTCCGACCAAAAGAGAATGACTTTATATTTTCAGCTATAA
AAGTGACCGCTGGAACTGATTCTATGTCCAACCAACTGAAGTACAACGAA
CGTATTTAAATGCAAAGACGAACCCCCCGGTGTGGATATCCCCTCCTGCG
TGACGCTGGCTGGTACGTCTATCTAGTCAGTTGTACAGATAGGCATATAT
CGCAACGTGTAGGTGCACTTACACCGAAATGTGTGGGTGGATGCGCACCG
AAAGATGACAAGGCAGACAAAGCCAGAGGGGACGAAAAATGCTCCAAATA
TCTTGACGAGTATCAAACAGTCCGACCAAAAGAGAATGACTTTATATTTT
CAGCTATAAAAGTGACCGCTGGAACTGATTCTATGTCCAACCAACTGAAG
TACAACGAACGTATTTAA
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