mRNA_L-elsbetiae_contig15402.3819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15402.3819.1
Unique NamemRNA_L-elsbetiae_contig15402.3819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15402.3819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15402contigL-elsbetiae_contig15402:1688..2078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.5550632-CDS-L-elsbetiae_contig15402:1687..17711622815628.5550632-CDS-L-elsbetiae_contig15402:1687..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15402 1688..1771 +
1691683000.8227944-CDS-L-elsbetiae_contig15402:1687..17711691683000.8227944-CDS-L-elsbetiae_contig15402:1687..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15402 1688..1771 +
1622815628.5699606-CDS-L-elsbetiae_contig15402:1994..20781622815628.5699606-CDS-L-elsbetiae_contig15402:1994..2078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15402 1995..2078 +
1691683000.8322816-CDS-L-elsbetiae_contig15402:1994..20781691683000.8322816-CDS-L-elsbetiae_contig15402:1994..2078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15402 1995..2078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15402.3819.1prot_L-elsbetiae_contig15402.3819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15402 1688..2078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15402.3819.1

>prot_L-elsbetiae_contig15402.3819.1 ID=prot_L-elsbetiae_contig15402.3819.1|Name=mRNA_L-elsbetiae_contig15402.3819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
AAAAEEEEEGTQNPHAIGGEEKEEEFDDCERPMYTRNAKSGTHMCNDATN
PLHPWI
back to top

mRNA from alignment at L-elsbetiae_contig15402:1688..2078+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15402.3819.1 ID=mRNA_L-elsbetiae_contig15402.3819.1|Name=mRNA_L-elsbetiae_contig15402.3819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=391bp|location=Sequence derived from alignment at L-elsbetiae_contig15402:1688..2078+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCCGCCGAAGAAGAAGAAGAAGGCACCCAAAACCCTCACGCGAT
CGGTGGAGAGGAGAAGGAGGAAGAGTTTGATGATGTAGGCGAGGTGGTAC
ATCCAGCACGTCATGCAGAGGCGTAAAGAACGATGTTTGCATAGTTACCT
CCGCAATGTTCTCTTATGATATGTGTCTGCCGCTGTTCCGACTGAATGAT
GTATTGTGCTGATCAACCACTTTTGAGTTTTGGCAGACATGCTGCCATTT
GCCACACCTGATTCATCCTCGTCCCTTTGGCGGTTGGTAATTTTTCTTTT
GCTACAGTGTGAGAGGCCTATGTACACGAGGAACGCGAAGAGCGGTACAC
ACATGTGTAATGACGCCACCAACCCACTTCATCCATGGATT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15402:1688..2078+

>mRNA_L-elsbetiae_contig15402.3819.1 ID=mRNA_L-elsbetiae_contig15402.3819.1|Name=mRNA_L-elsbetiae_contig15402.3819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig15402:1688..2078+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCCGCCGAAGAAGAAGAAGAAGGCACCCAAAACCCTCACGCGAT
CGGTGGAGAGGAGAAGGAGGAAGAGTTTGATGATGCTGCTGCCGCCGAAG
AAGAAGAAGAAGGCACCCAAAACCCTCACGCGATCGGTGGAGAGGAGAAG
GAGGAAGAGTTTGATGATTGTGAGAGGCCTATGTACACGAGGAACGCGAA
GAGCGGTACACACATGTGTAATGACGCCACCAACCCACTTCATCCATGGA
TTTGTGAGAGGCCTATGTACACGAGGAACGCGAAGAGCGGTACACACATG
TGTAATGACGCCACCAACCCACTTCATCCATGGATT
back to top