mRNA_L-elsbetiae_contig1540.3817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1540.3817.1
Unique NamemRNA_L-elsbetiae_contig1540.3817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A6H5LJJ9_9PHAE (UmuC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJJ9_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 9.490e-96
Identity = 152/180 (84.44%), Postives = 160/180 (88.89%), Query Frame = 2
Query:  104 AKPSTAMKGGWRQGPALSAGGGRGLGPALKEPLRVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSL 643
            AK S A    W  G A+SAGGGRGL PALKEPLRVIAHIDMDAFYAQIEQLRD ALTGRPVVVVQYPTS HDI+DM PDDNRVVE SASSIIAVSYEARP GVKRGMKA DA+K+CPEL+LVQVPTRNGKADISLYRHAGE+VV+VLERAGG  T VEKASIDEVYVD+TRAA ALLSSL
Sbjct:   11 AKISPAAGNAWTGGSAVSAGGGRGLAPALKEPLRVIAHIDMDAFYAQIEQLRDAALTGRPVVVVQYPTSNHDIKDMEPDDNRVVEGSASSIIAVSYEARPFGVKRGMKAGDARKVCPELALVQVPTRNGKADISLYRHAGERVVAVLERAGGALTTVEKASIDEVYVDVTRAAHALLSSL 190          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: D7FT49_ECTSI (Translesion synthesis DNA polymerase eta splice variant n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT49_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 6.890e-91
Identity = 159/199 (79.90%), Postives = 166/199 (83.42%), Query Frame = 2
Query:   89 MATPTAKPST-----AMKGGWRQGPALSAGGGRGLGPALKEPLRVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSL-----EGGG 655
            MAT   K ST     A   GW  G A+SAGGGRGL PALKEPLRVIAHIDMDAFYAQIEQLRD ALTGRPVVVVQYPTS HDI+DM PDDNRVVE SASSIIAVSYEARP GVKRGMKA DA+K+CPELSLVQVPTRNGKADIS YRHAGE+VV+VLERAGG  T VEKASIDEVYVD+TRAA ALLSSL     E GG
Sbjct:    1 MATSATKSSTSKIPPAAGSGWTGGSAVSAGGGRGLAPALKEPLRVIAHIDMDAFYAQIEQLRDAALTGRPVVVVQYPTSNHDIKDMAPDDNRVVEGSASSIIAVSYEARPFGVKRGMKAGDARKVCPELSLVQVPTRNGKADISFYRHAGERVVAVLERAGGALTTVEKASIDEVYVDVTRAAHALLSSLGSHNSESGG 199          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: L1JQL2_GUITC (UmuC domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQL2_GUITC)

HSP 1 Score: 152 bits (383), Expect = 3.180e-41
Identity = 80/148 (54.05%), Postives = 107/148 (72.30%), Query Frame = 2
Query:  203 RVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSLE 646
            RV+AH+DMD FY Q+EQ RD +L G+PV V+QY     D++D+RPD+NR  + S  S+IAVSYEAR  GVKR M+  +A++ CP+L L+QVP  + K+DI+LYR AG +VV+VL R    ++A E+ASIDEVY DIT AA   L  +E
Sbjct:    3 RVVAHVDMDCFYVQVEQRRDESLRGKPVAVIQY-NPNGDLQDVRPDENRRCDHSDGSLIAVSYEARAKGVKRIMRGKEARQACPDLILIQVPVAHKKSDINLYREAGAEVVNVLARF---SSACERASIDEVYCDITDAALLQLDEIE 146          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A835Y9U0_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y9U0_9CHLO)

HSP 1 Score: 155 bits (391), Expect = 8.680e-40
Identity = 83/150 (55.33%), Postives = 109/150 (72.67%), Query Frame = 2
Query:  203 RVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQY-PTSKHDIED-MRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSLE 646
            RV+AHID+DAFYAQ+EQ R+ AL G+PV VVQY P     ++  +RP+DNR++ DS  SIIAVSYEAR  GVKR M    A+KLCP L LVQVPT +GKAD+++YR AG++V +VL R        E+ASIDE Y+D+T AA  +++ L+
Sbjct:   13 RVVAHIDLDAFYAQVEQRRNPALRGQPVAVVQYNPWDTEALKTALRPEDNRILNDSNGSIIAVSYEARKFGVKRNMMGQQARKLCPTLQLVQVPTAHGKADLTIYRQAGQQVAAVLARGA----LFERASIDEAYLDLTGAATRMVAQLD 158          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A1D2AE22_AUXPR (UmuC domain-containing protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AE22_AUXPR)

HSP 1 Score: 144 bits (364), Expect = 1.550e-39
Identity = 78/148 (52.70%), Postives = 106/148 (71.62%), Query Frame = 2
Query:  203 RVIAHIDMDAFYAQIEQLRD-TALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSL 643
            +VI H+D+DAFYAQ+E  RD   L G+P+ VVQY   + D+  + P+D+RV+  S +SIIAVSYEAR  GV+R M+  +A  LCP+L LVQVPT +GKAD++LYR AG +V+++L    G   A E+ASIDE Y+D+T AA A L+ L
Sbjct:   42 KVICHVDLDAFYAQVEAKRDPNRLAGKPLAVVQY-NPQGDLRTLLPEDDRVIPASPNSIIAVSYEARAQGVRRNMRGDEACALCPDLILVQVPTAHGKADLTLYRAAGRRVLALLAACAG---ACERASIDEAYLDLTEAAAARLAKL 185          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A7S1DMI3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DMI3_HEMAN)

HSP 1 Score: 145 bits (366), Expect = 3.740e-39
Identity = 82/152 (53.95%), Postives = 105/152 (69.08%), Query Frame = 2
Query:  206 VIAHIDMDAFYAQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALL---SSLEGG 652
            V+AHIDMDAFYAQ+E+  +  L   PV VVQY T   +I+DM P D+R  +  + +IIAVSYEAR SGVKR M A  A+ LCPEL+++QVP  N K+DI+LYR AG +VV+V+ R        E++SIDEVYVD++ AA  LL   S  EGG
Sbjct:    1 VVAHIDMDAFYAQVEKRLNPPLASSPVAVVQYNTYADNIKDMLPSDDRKTD--SGTIIAVSYEARSSGVKRNMNAKAAKALCPELTVIQVPVTNKKSDINLYREAGAEVVTVISR----NYTCERSSIDEVYVDVSEAAHTLLRDVSEQEGG 146          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A835T5S5_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T5S5_CHLIN)

HSP 1 Score: 153 bits (386), Expect = 4.210e-39
Identity = 83/150 (55.33%), Postives = 106/150 (70.67%), Query Frame = 2
Query:  203 RVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQY-PTSKHDIED-MRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSLE 646
            RV+AHID+DAFYAQ+E  R+ AL G+PV VVQY P     ++  +RPDD R+  DS  SIIAVSYEAR  GVKR M   +A+K CP L LVQVPT +GKAD+++YR AG +V  VL    G    +E+ASIDE Y+D+T AAQ LL++ +
Sbjct:   29 RVVAHIDLDAFYAQVEVGRNPALRGQPVAVVQYNPWDTEALKTALRPDDPRIFNDSNGSIIAVSYEARRYGVKRNMSGQEARKACPALQLVQVPTAHGKADLTIYRQAGARVAEVLLGRCGGGAVLERASIDEAYLDLTEAAQRLLAAAD 178          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A2K3D4A8_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3D4A8_CHLRE)

HSP 1 Score: 152 bits (385), Expect = 5.740e-39
Identity = 82/150 (54.67%), Postives = 106/150 (70.67%), Query Frame = 2
Query:  203 RVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQY-PTSKHDIED-MRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSLE 646
            +V+AHID+DAFYAQ+E  R+ +L GRPV VVQY P     ++  +RPDD R+  DS  SIIAVSYEAR  GVKR M   +A+K CP L LVQVPT +GKAD+++YR AG +V  VL    G    +E+ASIDE Y+D+T AAQ LL++ +
Sbjct:   17 KVVAHIDLDAFYAQVEVGRNPSLRGRPVAVVQYNPWDTEALKTALRPDDPRIFNDSNGSIIAVSYEARKFGVKRNMSGQEARKACPTLQLVQVPTAHGKADLTIYRQAGARVAEVLLGRCGGGAVLERASIDEAYLDLTEAAQRLLAAAD 166          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A5J4XRP8_9CHLO (DNA polymerase eta n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XRP8_9CHLO)

HSP 1 Score: 147 bits (371), Expect = 2.640e-38
Identity = 78/149 (52.35%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  203 RVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQALLSSLEG 649
            RVIAH+D+DAFY Q+E  R+  L G+PVV VQY     D+  + PD+ R+  DS  S+IAVSYEAR SGVKRGM+   A+K+CPE+ LVQVPT +GKAD+++YR AG++VV +L R        E+ASIDE Y+D+T  A   L++  G
Sbjct:    8 RVIAHVDLDAFYTQVEVQRNPDLKGKPVVTVQY-NPFGDLRTITPDEPRIFNDSNGSLIAVSYEARASGVKRGMRGDQARKVCPEVQLVQVPTAHGKADLTVYRDAGKQVVEILSRMA----ICERASIDECYLDLTEEAHKRLAASGG 151          
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Match: A0A383VYK4_TETOB (UmuC domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VYK4_TETOB)

HSP 1 Score: 150 bits (379), Expect = 3.350e-38
Identity = 80/144 (55.56%), Postives = 101/144 (70.14%), Query Frame = 2
Query:  200 LRVIAHIDMDAFYAQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVSYEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVSVLERAGGETTAVEKASIDEVYVDITRAAQAL 631
            +RV+AH+D+DAFY Q+E  R+ +L G PVVVVQY     D+  ++P DNR+  DS  SIIAVSYEAR  GVKR M A  A+KLCPEL++VQVP  +GKADI +YR AG  V+SVL   G      E+AS+DE Y+D+T  AQ L
Sbjct:    1 MRVLAHVDLDAFYTQVEVQRNPSLKGTPVVVVQY-NPYGDLRTVKPSDNRLFPDSNGSIIAVSYEARKHGVKRNMMAQAAKKLCPELNIVQVPVAHGKADIQIYRDAGAAVISVLSSDGA---ICERASVDEAYLDVTAGAQQL 140          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1540.3817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJJ9_9PHAE9.490e-9684.44UmuC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FT49_ECTSI6.890e-9179.90Translesion synthesis DNA polymerase eta splice va... [more]
L1JQL2_GUITC3.180e-4154.05UmuC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Y9U0_9CHLO8.680e-4055.33Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A1D2AE22_AUXPR1.550e-3952.70UmuC domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1DMI3_HEMAN3.740e-3953.95Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835T5S5_CHLIN4.210e-3955.33Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A2K3D4A8_CHLRE5.740e-3954.67Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A5J4XRP8_9CHLO2.640e-3852.35DNA polymerase eta n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A383VYK4_TETOB3.350e-3855.56UmuC domain-containing protein n=2 Tax=Tetradesmus... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1540contigL-elsbetiae_contig1540:22832..24807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score295.0
Seed ortholog evalue2.4e-77
Seed eggNOG ortholog2880.D7FT49
Preferred namePOLH
KEGG koko:K03509,ko:K03510
KEGG Pathwayko01524,ko03460,map01524,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000731,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006290,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0007346,GO:0008080,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009650,GO:0009790,GO:0009792,GO:0009987,GO:0010224,GO:0010225,GO:0010564,GO:0010948,GO:0016043,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019985,GO:0022402,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034085,GO:0034086,GO:0034087,GO:0034088,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045786,GO:0045787,GO:0045930,GO:0045931,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051276,GO:0051716,GO:0051726,GO:0052858,GO:0060255,GO:0065007,GO:0070013,GO:0070601,GO:0070987,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071840,GO:0071897,GO:0071960,GO:0071962,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097159,GO:0098813,GO:0104004,GO:0140014,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901976,GO:1901977,GO:1903047,GO:1904289,GO:1904290,GO:2000001,GO:2000002,GO:2001020,GO:2001021
EggNOG free text desc.DNA synthesis involved in DNA repair
EggNOG OGsCOG0389@1,KOG2095@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons4
Model size657
Cds size567
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1540.3817.1prot_L-elsbetiae_contig1540.3817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1540 22920..24807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.3943267-UTR-L-elsbetiae_contig1540:22831..229191622815628.3943267-UTR-L-elsbetiae_contig1540:22831..22919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1540 22832..22919 +
1691683000.723225-UTR-L-elsbetiae_contig1540:22831..229191691683000.723225-UTR-L-elsbetiae_contig1540:22831..22919Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1540 22832..22919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.4079683-CDS-L-elsbetiae_contig1540:22919..230841622815628.4079683-CDS-L-elsbetiae_contig1540:22919..23084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 22920..23084 +
1691683000.7345438-CDS-L-elsbetiae_contig1540:22919..230841691683000.7345438-CDS-L-elsbetiae_contig1540:22919..23084Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 22920..23084 +
1622815628.4182346-CDS-L-elsbetiae_contig1540:23649..238051622815628.4182346-CDS-L-elsbetiae_contig1540:23649..23805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 23650..23805 +
1691683000.7465346-CDS-L-elsbetiae_contig1540:23649..238051691683000.7465346-CDS-L-elsbetiae_contig1540:23649..23805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 23650..23805 +
1622815628.4278467-CDS-L-elsbetiae_contig1540:24240..243441622815628.4278467-CDS-L-elsbetiae_contig1540:24240..24344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 24241..24344 +
1691683000.759851-CDS-L-elsbetiae_contig1540:24240..243441691683000.759851-CDS-L-elsbetiae_contig1540:24240..24344Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 24241..24344 +
1622815628.4373214-CDS-L-elsbetiae_contig1540:24665..248071622815628.4373214-CDS-L-elsbetiae_contig1540:24665..24807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 24666..24807 +
1691683000.770009-CDS-L-elsbetiae_contig1540:24665..248071691683000.770009-CDS-L-elsbetiae_contig1540:24665..24807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1540 24666..24807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1540.3817.1

>prot_L-elsbetiae_contig1540.3817.1 ID=prot_L-elsbetiae_contig1540.3817.1|Name=mRNA_L-elsbetiae_contig1540.3817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=189bp
MATPTAKPSTAMKGGWRQGPALSAGGGRGLGPALKEPLRVIAHIDMDAFY
AQIEQLRDTALTGRPVVVVQYPTSKHDIEDMRPDDNRVVEDSASSIIAVS
YEARPSGVKRGMKAADAQKLCPELSLVQVPTRNGKADISLYRHAGEKVVS
VLERAGGETTAVEKASIDEVYVDITRAAQALLSSLEGGG
back to top

mRNA from alignment at L-elsbetiae_contig1540:22832..24807+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1540.3817.1 ID=mRNA_L-elsbetiae_contig1540.3817.1|Name=mRNA_L-elsbetiae_contig1540.3817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1976bp|location=Sequence derived from alignment at L-elsbetiae_contig1540:22832..24807+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCAAAGACGAAAAGGATAGGCACCCGGACAAACCTGTTTTTGAATTTC GTGTTTGAATTTCCTGACGGACAAGCCCGGACACACCCATGGCGACACCA ACAGCAAAACCATCAACGGCCATGAAAGGCGGTTGGAGACAGGGACCTGC CTTGTCTGCCGGCGGGGGTCGAGGGCTTGGGCCGGCCTTGAAGGAGCCGC TTAGAGTCATCGCGCACATCGATATGGATGCATTTTATGCTCAGATCGAA CAGGTATGCGGAAGTACAGCAGCAGCAGTAGACTCAGTGCCGCTCTACGA GGTCATCAGTGACCAGGGAGATGCACCGCCGCGTTTGCTGAGCATGAGGG GTGTAGAAAATAGCAGGACAAACAAGTTGTGCTGCTATATGTAGCTATGC TGTGGCGAATAGATGCGCGTGTACTCGTCATTGCCCAGGTGTTGCCAAAG AGGCGGATGGATTTTTTAAAATCTGCTTTGACGCTGACTCTGCTGACTCT GCATCTACGAGTCTACCTTGCAAGGTGCAGCAGTCTCCTGCCGTAGTGAT GATTTGATCGTAAATAGGGGGTGGGGCGTGCGTTCGGCACCGTTTCCTCG CCGTGCTACATTCCAATTTCTATCGACAACACCAAGCGATGCATCCCATC ACGAAGTCCGTCACTCTGTTCCTGCCGCTGTTCGAGCCTTTTTTCCATCC CACCTATCATAGAGCGGAGGCTGACTCTGCCTCCCCGTTGTAAACCAACT TTCGCATGGTACATACATACGCACGTACAGCAACGCCCCTTTTCCGAATT GCTTCCCGGAATGGTCAGCTCCGAGACACAGCCTTAACGGGCAGGCCGGT CGTGGTGGTGCAGTACCCAACATCCAAGCACGACATCGAGGACATGAGGC CTGACGACAACCGCGTGGTGGAGGATTCCGCCAGCTCCATCATCGCCGTC AGCTACGAGGCCCGTCCGAGCGGGGTGAGGTTACAACTCAAAAACGGAGT ACGTAACGTATGTTTCGAGACGGATGCGTACCAAGTGCGGCCGCTCGTAC ATATGTACGCTTGTTCTCCCCTCTCCCCCAGTCGACGCGATGCTCATGGA TGTTCATGGCACGACACACAACACACCAGAGAGTACTCCACCTCACTTTC AGCACCGGAGAGCGCACGCAGAGAGTAGGTGGGGTAGTAGGTATGTACAT AGTCGACAAAACGTAAGGTACCCAGACTAAATTGCACAAACACAAATCAT CTTGCACAAATGCCCATTGGAAACGCCTGCCGACTGCTGTCGAAAAGCCG ACGAAGATGACCTCCCCCTGGACTCAAGGCGCCGTTTGCATACCGATCGT GGGTGGAAACTGCTCCGCGATTTTTTTGTTTTTTTTGTGTGTGCCGTGCG TGAGAACAGGTGAAGCGTGGCATGAAAGCCGCCGACGCCCAGAAGCTTTG CCCGGAACTGTCTCTGGTGCAAGTGCCCACGCGCAACGGGAAGGCCGACA TCTCGCTCTACAGGTGCGCCGATACGGCCAGCGCTGGTAGCGCTCTGGAG AGCTTGTGATGTTAATACGGAGCGCCGGCACTTCGTAGTGATAGGCTGTG ACATGGTCTGTGACATGTTGGGCGACTGCTACATGTGGGTGTCACCGCTT GCGCGGCACATGCGATCTAAACGGCCGAGGGAGGCATGCGAAAGCGACCA GACACGGGAACAAGCCAACTCAACAACTTTGCTGCAATATCCCCCTCCCC CCCCCCTCCCCCTCCGGCTTATTTTCCTTGCCCGATCCCCTCCCTTCTCG CGCGCCCTTACTCTCCCGTCGCCGCCAAAAAAAGACACGCGGGAGAGAAG GTGGTGAGCGTGCTGGAGCGCGCCGGCGGCGAAACGACCGCTGTCGAGAA GGCCTCGATCGACGAGGTCTACGTGGACATCACGCGCGCCGCACAGGCCC TCCTGTCTAGCCTCGAGGGTGGCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1540:22832..24807+

>mRNA_L-elsbetiae_contig1540.3817.1 ID=mRNA_L-elsbetiae_contig1540.3817.1|Name=mRNA_L-elsbetiae_contig1540.3817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1134bp|location=Sequence derived from alignment at L-elsbetiae_contig1540:22832..24807+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACACCAACAGCAAAACCATCAACGGCCATGAAAGGCGGTTGGAG
ACAGGGACCTGCCTTGTCTGCCGGCGGGGGTCGAGGGCTTGGGCCGGCCT
TGAAGGAGCCGCTTAGAGTCATCGCGCACATCGATATGGATGCATTTTAT
GCTCAGATCGAACAGATGGCGACACCAACAGCAAAACCATCAACGGCCAT
GAAAGGCGGTTGGAGACAGGGACCTGCCTTGTCTGCCGGCGGGGGTCGAG
GGCTTGGGCCGGCCTTGAAGGAGCCGCTTAGAGTCATCGCGCACATCGAT
ATGGATGCATTTTATGCTCAGATCGAACAGCTCCGAGACACAGCCTTAAC
GGGCAGGCCGGTCGTGGTGGTGCAGTACCCAACATCCAAGCACGACATCG
AGGACATGAGGCCTGACGACAACCGCGTGGTGGAGGATTCCGCCAGCTCC
ATCATCGCCGTCAGCTACGAGGCCCGTCCGAGCGGGCTCCGAGACACAGC
CTTAACGGGCAGGCCGGTCGTGGTGGTGCAGTACCCAACATCCAAGCACG
ACATCGAGGACATGAGGCCTGACGACAACCGCGTGGTGGAGGATTCCGCC
AGCTCCATCATCGCCGTCAGCTACGAGGCCCGTCCGAGCGGGGTGAAGCG
TGGCATGAAAGCCGCCGACGCCCAGAAGCTTTGCCCGGAACTGTCTCTGG
TGCAAGTGCCCACGCGCAACGGGAAGGCCGACATCTCGCTCTACAGGTGA
AGCGTGGCATGAAAGCCGCCGACGCCCAGAAGCTTTGCCCGGAACTGTCT
CTGGTGCAAGTGCCCACGCGCAACGGGAAGGCCGACATCTCGCTCTACAG
ACACGCGGGAGAGAAGGTGGTGAGCGTGCTGGAGCGCGCCGGCGGCGAAA
CGACCGCTGTCGAGAAGGCCTCGATCGACGAGGTCTACGTGGACATCACG
CGCGCCGCACAGGCCCTCCTGTCTAGCCTCGAGGGTGGCGGCACACGCGG
GAGAGAAGGTGGTGAGCGTGCTGGAGCGCGCCGGCGGCGAAACGACCGCT
GTCGAGAAGGCCTCGATCGACGAGGTCTACGTGGACATCACGCGCGCCGC
ACAGGCCCTCCTGTCTAGCCTCGAGGGTGGCGGC
back to top