mRNA_L-elsbetiae_contig1539.3811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1539.3811.1
Unique NamemRNA_L-elsbetiae_contig1539.3811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1539.3811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1539contigL-elsbetiae_contig1539:9586..10146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score70.1
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog13249.RPRC013156-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeat
EggNOG OGs39PA1@33154,3CQUJ@33208,3E71H@33213,3T0N4@50557,42B7Z@6656,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.5486805-CDS-L-elsbetiae_contig1539:9585..101461622815627.5486805-CDS-L-elsbetiae_contig1539:9585..10146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1539 9586..10146 -
1691683000.1952977-CDS-L-elsbetiae_contig1539:9585..101461691683000.1952977-CDS-L-elsbetiae_contig1539:9585..10146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1539 9586..10146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1539.3811.1prot_L-elsbetiae_contig1539.3811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1539 9586..10146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1539.3811.1

>prot_L-elsbetiae_contig1539.3811.1 ID=prot_L-elsbetiae_contig1539.3811.1|Name=mRNA_L-elsbetiae_contig1539.3811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
VLLDAGAVDSYADEWGRPPLTLAVKGGHDDMVAELLRRGSLTVHDPMDFY
GATVLHLAAEKGHLGLVETFLRDGAEVNVIREPQQQTPLHSAAICGPNAE
AITMALLAAGADVAAEDHFSESALCMTSDVAVVRALVAAGACFHWREGHG
PPVEMAIERDDVEELSVFLELGVDPNHREPVSYPPLS
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mRNA from alignment at L-elsbetiae_contig1539:9586..10146-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1539.3811.1 ID=mRNA_L-elsbetiae_contig1539.3811.1|Name=mRNA_L-elsbetiae_contig1539.3811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=561bp|location=Sequence derived from alignment at L-elsbetiae_contig1539:9586..10146- (Laminarionema elsbetiae ELsaHSoW15)
GTCCTTCTCGACGCTGGGGCCGTTGACAGTTACGCCGACGAGTGGGGCCG
ACCTCCTCTGACCCTGGCCGTGAAGGGAGGGCACGATGACATGGTTGCCG
AGCTGCTGAGGCGAGGATCTCTGACAGTCCACGACCCGATGGACTTTTAC
GGCGCCACCGTGCTTCACCTAGCTGCAGAAAAAGGGCACTTGGGACTGGT
CGAAACGTTCCTGCGGGATGGTGCTGAGGTGAATGTTATCAGGGAGCCGC
AACAACAAACCCCTTTGCATTCCGCGGCGATATGTGGTCCGAATGCTGAA
GCAATCACCATGGCCCTTTTGGCTGCTGGCGCCGATGTTGCCGCCGAAGA
TCATTTCTCTGAGTCCGCACTCTGTATGACCTCCGACGTCGCAGTGGTCC
GTGCCCTTGTGGCGGCGGGAGCTTGCTTTCACTGGCGTGAAGGCCATGGT
CCTCCGGTTGAGATGGCCATAGAGAGAGACGACGTTGAAGAACTCTCTGT
GTTCCTCGAGCTAGGAGTTGACCCCAACCATCGTGAGCCGGTAAGCTATC
CACCACTATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1539:9586..10146-

>mRNA_L-elsbetiae_contig1539.3811.1 ID=mRNA_L-elsbetiae_contig1539.3811.1|Name=mRNA_L-elsbetiae_contig1539.3811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig1539:9586..10146- (Laminarionema elsbetiae ELsaHSoW15)
GTCCTTCTCGACGCTGGGGCCGTTGACAGTTACGCCGACGAGTGGGGCCG
ACCTCCTCTGACCCTGGCCGTGAAGGGAGGGCACGATGACATGGTTGCCG
AGCTGCTGAGGCGAGGATCTCTGACAGTCCACGACCCGATGGACTTTTAC
GGCGCCACCGTGCTTCACCTAGCTGCAGAAAAAGGGCACTTGGGACTGGT
CGAAACGTTCCTGCGGGATGGTGCTGAGGTGAATGTTATCAGGGAGCCGC
AACAACAAACCCCTTTGCATTCCGCGGCGATATGTGGTCCGAATGCTGAA
GCAATCACCATGGCCCTTTTGGCTGCTGGCGCCGATGTTGCCGCCGAAGA
TCATTTCTCTGAGTCCGCACTCTGTATGACCTCCGACGTCGCAGTGGTCC
GTGCCCTTGTGGCGGCGGGAGCTTGCTTTCACTGGCGTGAAGGCCATGGT
CCTCCGGTTGAGATGGCCATAGAGAGAGACGACGTTGAAGAACTCTCTGT
GTTCCTCGAGCTAGGAGTTGACCCCAACCATCGTGAGCCGGTAAGCTATC
CACCACTATCGGTCCTTCTCGACGCTGGGGCCGTTGACAGTTACGCCGAC
GAGTGGGGCCGACCTCCTCTGACCCTGGCCGTGAAGGGAGGGCACGATGA
CATGGTTGCCGAGCTGCTGAGGCGAGGATCTCTGACAGTCCACGACCCGA
TGGACTTTTACGGCGCCACCGTGCTTCACCTAGCTGCAGAAAAAGGGCAC
TTGGGACTGGTCGAAACGTTCCTGCGGGATGGTGCTGAGGTGAATGTTAT
CAGGGAGCCGCAACAACAAACCCCTTTGCATTCCGCGGCGATATGTGGTC
CGAATGCTGAAGCAATCACCATGGCCCTTTTGGCTGCTGGCGCCGATGTT
GCCGCCGAAGATCATTTCTCTGAGTCCGCACTCTGTATGACCTCCGACGT
CGCAGTGGTCCGTGCCCTTGTGGCGGCGGGAGCTTGCTTTCACTGGCGTG
AAGGCCATGGTCCTCCGGTTGAGATGGCCATAGAGAGAGACGACGTTGAA
GAACTCTCTGTGTTCCTCGAGCTAGGAGTTGACCCCAACCATCGTGAGCC
GGTAAGCTATCCACCACTATCG
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