mRNA_L-elsbetiae_contig15386.3810.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15386.3810.1
Unique NamemRNA_L-elsbetiae_contig15386.3810.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: D8LMQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ6_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 1.980e-63
Identity = 98/119 (82.35%), Postives = 110/119 (92.44%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            +KGVLETLAN+L+Q EEEIKADEAGK EFER L+Q L EKKREIESRI+AN RWT+SFDQDLGPF KMY+AKT+EIASIYDDAK RH+EG+KVLVNEF+YHPEFFRP+D FHATPFVPK
Sbjct:    8 IKGVLETLANKLKQQEEEIKADEAGKLEFERRLSQ-LREKKREIESRIDANMRWTASFDQDLGPFAKMYKAKTKEIASIYDDAKARHREGVKVLVNEFNYHPEFFRPKDGFHATPFVPK 125          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A7S2V5K3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5K3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.820e-34
Identity = 63/119 (52.94%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            +KGVL+ L NQL+ LEEEIKADE GK EFER LA  L  +K ++  RI+ N  W S++D D+GPF+  Y     +I  +Y  AK+ HK+ I VL  EF YHPEF RP D+F A+PF PK
Sbjct:   32 VKGVLDNLRNQLKVLEEEIKADEDGKAEFERQLAN-LQRRKEDLLKRIKENREWASTYDSDMGPFQSNYDNIAHDIGDLYSGAKKHHKQAIGVLKREFGYHPEFKRPTDTFSASPFRPK 149          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A2D4BM09_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BM09_PYTIN)

HSP 1 Score: 109 bits (272), Expect = 1.010e-27
Identity = 54/119 (45.38%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            + GVLETL  ++  L+ EI+ADE+GKQ+++  L + LGE++R+++S++     W ++F+  + P E  Y A T+ +   Y+DAK RH +GI+VL++EFDYHPEF R  D+F A PF PK
Sbjct:   67 ISGVLETLQMKIDLLDREIRADESGKQDYDDQLFR-LGERRRDLDSKLRQCRDWIATFESKIQPLEGKYDATTQLMQQQYEDAKLRHAQGIQVLIDEFDYHPEFKRYSDTFSAVPFRPK 184          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A7S3DC27_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DC27_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.780e-27
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            +  +LE     + QL  EIKAD+ G +++ER L   L  +KR++E RIEANT+W +S+D ++GPF + Y   T ++  +YD+AKE+H  G+ +L  EF+YHP F R  D F A PF P+
Sbjct:   24 IANLLENAQTAVEQLNTEIKADDKGIEDWERQLGY-LTRRKRDLEKRIEANTKWATSYDGEIGPFTQKYDNFTSDLGKLYDNAKEKHAGGLDILKEEFEYHPAFKRWHDYFSAVPFKPE 141          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A8K1CM03_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CM03_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 2.000e-24
Identity = 51/119 (42.86%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            + GVLE+L  ++  L+ EIKADE GKQ+++  L + L E++ + E+++     W  +F+  + P E  Y A T+ +   Y DAK RH +GI+VL+++FDYHPEF R  D+F A PF PK
Sbjct:   39 VSGVLESLQMRIDMLDREIKADEKGKQDYDDQLFR-LNERRTDYENKLRQCRDWIETFESKIRPLEGKYDATTQLMQEQYGDAKLRHAQGIQVLIDQFDYHPEFKRYSDTFSAVPFRPK 156          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A5D6XS68_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS68_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.050e-23
Identity = 52/119 (43.70%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            L GVLETL  ++  LE EI+ADE GKQ+++  L + LG+++ ++++++  +  W + FD+ + P E  Y   T  + + Y+DAK RH +G++VLV+ FDYHPEF R  D+F A PF PK
Sbjct: 1253 LGGVLETLELRIDTLEREIRADEKGKQDYDDQLFR-LGQRRADLDAKLRESQDWIALFDRSIKPLEGKYSETTGHMQAQYEDAKLRHAQGVRVLVDNFDYHPEFKRFSDTFSAVPFKPK 1370          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A1W0A799_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A799_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 5.950e-23
Identity = 50/119 (42.02%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            + GVLETL  ++  L++EIKAD  GK+++E  L + L  +K +I  +++   RWT  F   + P E  Y+A T E+++ YD AK +H +G++VL++ F+YHPE+ R  D F A PF PK
Sbjct:   36 IAGVLETLQGKMDVLDKEIKADMKGKKDYEDELFK-LQTRKEDILVKLKECQRWTDLFASKIQPLENSYKATTVEMSNEYDQAKVKHAQGLQVLIDNFNYHPEYKRYNDEFSAVPFRPK 153          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A2D4BLZ8_PYTIN (Phosphatase tensin-type domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLZ8_PYTIN)

HSP 1 Score: 100 bits (249), Expect = 3.240e-22
Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHA 339
            + GVLETL  ++  L+ EI+ADE+GKQ+++  L + LGE++R+++S++     W ++F+  + P E  Y A T+ +   Y+DAK RH +GI+VL++EFDYHPEF R  D+F A
Sbjct: 1152 ISGVLETLQMKIDLLDREIRADESGKQDYDDQLFR-LGERRRDLDSKLRQCRDWIATFESKIQPLEGKYDATTQLMQQQYEDAKLRHAQGIQVLIDEFDYHPEFKRYSDTFSA 1263          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: A0A662WQL8_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQL8_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 3.550e-22
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    7 GVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            G LE +   + QL  EIKADE GKQ+++  L + L ++++++E+++     W++ F+  + P    Y   T  +   Y+DAK RH +GIKVL+  FDYHPEF R  D+F A PF PK
Sbjct:   40 GALEGVQMTINQLNREIKADEKGKQDYDDQLFR-LNQRRKDMEAKLLECREWSALFESKIKPLAGKYTETTDNMQGQYEDAKLRHAQGIKVLIENFDYHPEFKRFSDTFSAVPFKPK 155          
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Match: T0RR79_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RR79_SAPDV)

HSP 1 Score: 94.0 bits (232), Expect = 4.900e-22
Identity = 48/119 (40.34%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEANTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDYHPEFFRPRDSFHATPFVPK 357
            + G L+TLA ++  LE EIKAD  GK+++E  L + +  +K +I  ++    RW   F   + P E  Y A T E++  YD AK +H +G++VL++ F+YHPE+ R  D F A PF PK
Sbjct:   37 IAGALDTLAGRMDMLEREIKADMKGKKDYEDELFK-INTRKEDIMRKLAECERWNGIFQSKIKPLENSYLATTVEMSEEYDQAKIKHAQGLQVLIDNFNYHPEYKRYNDDFSAVPFRPK 154          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15386.3810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMQ6_ECTSI1.980e-6382.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V5K3_9STRA4.820e-3452.94Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BM09_PYTIN1.010e-2745.38Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A7S3DC27_9EUKA1.780e-2743.70Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A8K1CM03_PYTOL2.000e-2442.86Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XS68_9STRA1.050e-2343.70Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1W0A799_9STRA5.950e-2342.02Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2D4BLZ8_PYTIN3.240e-2244.25Phosphatase tensin-type domain-containing protein ... [more]
A0A662WQL8_9STRA3.550e-2241.03Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
T0RR79_SAPDV4.900e-2240.34Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15386contigL-elsbetiae_contig15386:2590..3552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue2.6e-48
Seed eggNOG ortholog2880.D8LMQ6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CZ2R@1,2S82N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003290.1
Exons2
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.5008945-CDS-L-elsbetiae_contig15386:2589..28441622815627.5008945-CDS-L-elsbetiae_contig15386:2589..2844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15386 2590..2844 -
1691683000.1767993-CDS-L-elsbetiae_contig15386:2589..28441691683000.1767993-CDS-L-elsbetiae_contig15386:2589..2844Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15386 2590..2844 -
1622815627.5127442-CDS-L-elsbetiae_contig15386:3447..35521622815627.5127442-CDS-L-elsbetiae_contig15386:3447..3552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15386 3448..3552 -
1691683000.1865382-CDS-L-elsbetiae_contig15386:3447..35521691683000.1865382-CDS-L-elsbetiae_contig15386:3447..3552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15386 3448..3552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15386.3810.1prot_L-elsbetiae_contig15386.3810.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15386 2590..3552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15386.3810.1

>prot_L-elsbetiae_contig15386.3810.1 ID=prot_L-elsbetiae_contig15386.3810.1|Name=mRNA_L-elsbetiae_contig15386.3810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
LKGVLETLANQLRQLEEEIKADEAGKQEFERLLAQQLGEKKREIESRIEA
NTRWTSSFDQDLGPFEKMYQAKTREIASIYDDAKERHKEGIKVLVNEFDY
HPEFFRPRDSFHATPFVPK*
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mRNA from alignment at L-elsbetiae_contig15386:2590..3552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15386.3810.1 ID=mRNA_L-elsbetiae_contig15386.3810.1|Name=mRNA_L-elsbetiae_contig15386.3810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=963bp|location=Sequence derived from alignment at L-elsbetiae_contig15386:2590..3552- (Laminarionema elsbetiae ELsaHSoW15)
CTAAAGGGTGTGCTGGAAACGCTGGCTAACCAGCTGAGGCAGCTCGAGGA GGAGATCAAAGCCGACGAGGCTGGAAAGCAGGAGTTTGAACGACTACTAG CTCAGGTGAGTGGAAACAGTGAATGAAAACTTTTCTAGTCAAGAATAGGC TCTCTTTGTAGTCCACAGAAGAAATCTCGGAAATGCATAGCCTTGGATCA AACGGGCCAATTACTAAGGAGTAGAGACGAAGTAGATACAAGACAACCGC CGACCAACCGGCCAACTGGCATAACATACGTGTTGAACACAACGTTCCAA GAGCTGTCTGGACTCTGTGTCAGTCCGATGTTCAGTTTTATCGTGCAATG TCTCCGGCCAGGCATGTGTGACTGTCTCAATCTACGACTTAACTGTCAGC CCAGTGAAGTGCCAGAGATGCGATCGGAATACGTAGATAGACATGCTTCG TGACGTACGAAAAGTGTCTTTCGATGCCTGTGGCCTCTAGAGTGCGTCGG ATGTTTTATTTTGTGTCTCCAGCCTGGCATGTGTGACTGTCTCAATCTAC GACTTGACTGCCAGCCCAGTGAAGTGCCAGAGATGCGACCGGAATAAGTG GACATGCTTCGCGACGTACAAAAAGTCTTGTTCGTGCCTGTGGCCTCGAG ACTACGTTGGATGTTTTATTTTGATTTCATTCCAAATGTTCCCCCAACCA AATCGAAGCAGCTTGGGGAGAAGAAGCGGGAGATCGAGAGTCGGATAGAG GCCAACACACGGTGGACATCCAGCTTTGACCAGGATTTGGGGCCGTTCGA GAAGATGTACCAAGCCAAGACAAGAGAGATTGCCTCCATTTATGACGACG CCAAAGAACGACACAAGGAAGGCATCAAGGTTCTTGTCAACGAGTTTGAC TACCACCCGGAGTTTTTCAGGCCTAGAGACAGTTTTCACGCAACACCGTT TGTGCCTAAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15386:2590..3552-

>mRNA_L-elsbetiae_contig15386.3810.1 ID=mRNA_L-elsbetiae_contig15386.3810.1|Name=mRNA_L-elsbetiae_contig15386.3810.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig15386:2590..3552- (Laminarionema elsbetiae ELsaHSoW15)
CTAAAGGGTGTGCTGGAAACGCTGGCTAACCAGCTGAGGCAGCTCGAGGA
GGAGATCAAAGCCGACGAGGCTGGAAAGCAGGAGTTTGAACGACTACTAG
CTCAGCTAAAGGGTGTGCTGGAAACGCTGGCTAACCAGCTGAGGCAGCTC
GAGGAGGAGATCAAAGCCGACGAGGCTGGAAAGCAGGAGTTTGAACGACT
ACTAGCTCAGCAGCTTGGGGAGAAGAAGCGGGAGATCGAGAGTCGGATAG
AGGCCAACACACGGTGGACATCCAGCTTTGACCAGGATTTGGGGCCGTTC
GAGAAGATGTACCAAGCCAAGACAAGAGAGATTGCCTCCATTTATGACGA
CGCCAAAGAACGACACAAGGAAGGCATCAAGGTTCTTGTCAACGAGTTTG
ACTACCACCCGGAGTTTTTCAGGCCTAGAGACAGTTTTCACGCAACACCG
TTTGTGCCTAAGTGACAGCTTGGGGAGAAGAAGCGGGAGATCGAGAGTCG
GATAGAGGCCAACACACGGTGGACATCCAGCTTTGACCAGGATTTGGGGC
CGTTCGAGAAGATGTACCAAGCCAAGACAAGAGAGATTGCCTCCATTTAT
GACGACGCCAAAGAACGACACAAGGAAGGCATCAAGGTTCTTGTCAACGA
GTTTGACTACCACCCGGAGTTTTTCAGGCCTAGAGACAGTTTTCACGCAA
CACCGTTTGTGCCTAAGTGA
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