mRNA_L-elsbetiae_contig15383.3809.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15383.3809.1
Unique NamemRNA_L-elsbetiae_contig15383.3809.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15383.3809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15383contigL-elsbetiae_contig15383:1695..2120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15383.3809.1prot_L-elsbetiae_contig15383.3809.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15383 1706..2023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.4219744-UTR-L-elsbetiae_contig15383:1694..17051622815627.4219744-UTR-L-elsbetiae_contig15383:1694..1705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 1695..1705 +
1691683000.147591-UTR-L-elsbetiae_contig15383:1694..17051691683000.147591-UTR-L-elsbetiae_contig15383:1694..1705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 1695..1705 +
1622815627.4532971-UTR-L-elsbetiae_contig15383:2023..21201622815627.4532971-UTR-L-elsbetiae_contig15383:2023..2120Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 2024..2120 +
1691683000.165585-UTR-L-elsbetiae_contig15383:2023..21201691683000.165585-UTR-L-elsbetiae_contig15383:2023..2120Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 2024..2120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.4381983-CDS-L-elsbetiae_contig15383:1705..20231622815627.4381983-CDS-L-elsbetiae_contig15383:1705..2023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15383 1706..2023 +
1691683000.1572092-CDS-L-elsbetiae_contig15383:1705..20231691683000.1572092-CDS-L-elsbetiae_contig15383:1705..2023Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15383 1706..2023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15383.3809.1

>prot_L-elsbetiae_contig15383.3809.1 ID=prot_L-elsbetiae_contig15383.3809.1|Name=mRNA_L-elsbetiae_contig15383.3809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MERLPVIIYSAPPAWTRGNWETTRTYVKRRVTHRWLLALSTDCTSFCSRS
GAYRRHRHSLVLRRWLANYSAFQDSLPGRSKCDAPHVRTYETHVNYIRPT
STSPS*
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mRNA from alignment at L-elsbetiae_contig15383:1695..2120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15383.3809.1 ID=mRNA_L-elsbetiae_contig15383.3809.1|Name=mRNA_L-elsbetiae_contig15383.3809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig15383:1695..2120+ (Laminarionema elsbetiae ELsaHSoW15)
TGTATGCTGTCATGGAAAGGCTTCCAGTCATAATCTATTCCGCACCGCCT
GCCTGGACTCGGGGTAACTGGGAGACGACCCGCACATATGTAAAACGCCG
AGTTACGCACCGATGGTTATTAGCACTATCCACTGACTGTACTAGTTTCT
GCTCGAGGTCGGGGGCCTATCGACGGCATCGACACTCCTTGGTCCTGCGG
AGATGGTTGGCGAACTACTCCGCCTTTCAAGACTCTTTGCCTGGGCGTTC
AAAGTGTGACGCTCCGCATGTACGTACGTACGAAACACACGTAAATTACA
TACGTCCAACTTCGACTTCACCGTCTTAACGAGGGAAAAGGACGGCTGAA
CCCTTCTCGCAACAAAAATCTTACGCATACCACCGCAGAAGGTGGGAGTG
GGGGCCTCGGGGAGAGGAACCCTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15383:1695..2120+

>mRNA_L-elsbetiae_contig15383.3809.1 ID=mRNA_L-elsbetiae_contig15383.3809.1|Name=mRNA_L-elsbetiae_contig15383.3809.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig15383:1695..2120+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAAGGCTTCCAGTCATAATCTATTCCGCACCGCCTGCCTGGACTCG
GGGTAACTGGGAGACGACCCGCACATATGTAAAACGCCGAGTTACGCACC
GATGGTTATTAGCACTATCCACTGACTGTACTAGTTTCTGCTCGAGGTCG
GGGGCCTATCGACGGCATCGACACTCCTTGGTCCTGCGGAGATGGTTGGC
GAACTACTCCGCCTTTCAAGACTCTTTGCCTGGGCGTTCAAAGTGTGACG
CTCCGCATGTACGTACGTACGAAACACACGTAAATTACATACGTCCAACT
TCGACTTCACCGTCTTAAATGGAAAGGCTTCCAGTCATAATCTATTCCGC
ACCGCCTGCCTGGACTCGGGGTAACTGGGAGACGACCCGCACATATGTAA
AACGCCGAGTTACGCACCGATGGTTATTAGCACTATCCACTGACTGTACT
AGTTTCTGCTCGAGGTCGGGGGCCTATCGACGGCATCGACACTCCTTGGT
CCTGCGGAGATGGTTGGCGAACTACTCCGCCTTTCAAGACTCTTTGCCTG
GGCGTTCAAAGTGTGACGCTCCGCATGTACGTACGTACGAAACACACGTA
AATTACATACGTCCAACTTCGACTTCACCGTCTTAA
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