mRNA_L-elsbetiae_contig15383.3808.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15383.3808.1
Unique NamemRNA_L-elsbetiae_contig15383.3808.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15383.3808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15383contigL-elsbetiae_contig15383:461..859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15383.3808.1prot_L-elsbetiae_contig15383.3808.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15383 487..801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.3606985-UTR-L-elsbetiae_contig15383:460..4861622815627.3606985-UTR-L-elsbetiae_contig15383:460..486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 461..486 +
1691683000.116804-UTR-L-elsbetiae_contig15383:460..4861691683000.116804-UTR-L-elsbetiae_contig15383:460..486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 461..486 +
1622815627.3841448-UTR-L-elsbetiae_contig15383:801..8591622815627.3841448-UTR-L-elsbetiae_contig15383:801..859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 802..859 +
1691683000.1382222-UTR-L-elsbetiae_contig15383:801..8591691683000.1382222-UTR-L-elsbetiae_contig15383:801..859Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15383 802..859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.3730164-CDS-L-elsbetiae_contig15383:486..8011622815627.3730164-CDS-L-elsbetiae_contig15383:486..801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15383 487..801 +
1691683000.1290336-CDS-L-elsbetiae_contig15383:486..8011691683000.1290336-CDS-L-elsbetiae_contig15383:486..801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15383 487..801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15383.3808.1

>prot_L-elsbetiae_contig15383.3808.1 ID=prot_L-elsbetiae_contig15383.3808.1|Name=mRNA_L-elsbetiae_contig15383.3808.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MKPPRRYGLAMVAVRKVCTELPHAATAKNGCTSCADVAFDRSTISTQNIQ
QERRVFRTKAKNTTHHSSSAPVPLPPVTLFINLSSAHKHRRYKAFGPALS
LFKL*
back to top

mRNA from alignment at L-elsbetiae_contig15383:461..859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15383.3808.1 ID=mRNA_L-elsbetiae_contig15383.3808.1|Name=mRNA_L-elsbetiae_contig15383.3808.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig15383:461..859+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCTCCCAGACGACATTCGCTCAAATGAAACCCCCACGCCGGTACGGG
TTGGCGATGGTAGCGGTACGGAAGGTATGCACAGAGCTGCCGCACGCAGC
GACCGCAAAAAATGGCTGTACATCCTGTGCAGACGTTGCGTTTGATCGAT
CGACCATCAGCACACAAAACATCCAACAAGAGAGACGTGTATTCCGCACC
AAGGCAAAAAACACCACACATCACAGCAGCAGTGCGCCTGTCCCCCTCCC
CCCCGTCACCCTATTTATCAACTTATCCTCTGCACACAAGCATCGCCGTT
ACAAAGCGTTCGGCCCGGCGCTGAGCCTTTTCAAGCTTTGAAATCCTGAA
GCACTAAACGTGCTGAAAGCAACTGAGCCGGCACTCCCGCGAGCGAGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15383:461..859+

>mRNA_L-elsbetiae_contig15383.3808.1 ID=mRNA_L-elsbetiae_contig15383.3808.1|Name=mRNA_L-elsbetiae_contig15383.3808.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig15383:461..859+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAACCCCCACGCCGGTACGGGTTGGCGATGGTAGCGGTACGGAAGGT
ATGCACAGAGCTGCCGCACGCAGCGACCGCAAAAAATGGCTGTACATCCT
GTGCAGACGTTGCGTTTGATCGATCGACCATCAGCACACAAAACATCCAA
CAAGAGAGACGTGTATTCCGCACCAAGGCAAAAAACACCACACATCACAG
CAGCAGTGCGCCTGTCCCCCTCCCCCCCGTCACCCTATTTATCAACTTAT
CCTCTGCACACAAGCATCGCCGTTACAAAGCGTTCGGCCCGGCGCTGAGC
CTTTTCAAGCTTTGAATGAAACCCCCACGCCGGTACGGGTTGGCGATGGT
AGCGGTACGGAAGGTATGCACAGAGCTGCCGCACGCAGCGACCGCAAAAA
ATGGCTGTACATCCTGTGCAGACGTTGCGTTTGATCGATCGACCATCAGC
ACACAAAACATCCAACAAGAGAGACGTGTATTCCGCACCAAGGCAAAAAA
CACCACACATCACAGCAGCAGTGCGCCTGTCCCCCTCCCCCCCGTCACCC
TATTTATCAACTTATCCTCTGCACACAAGCATCGCCGTTACAAAGCGTTC
GGCCCGGCGCTGAGCCTTTTCAAGCTTTGA
back to top