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Homology
BLAST of mRNA_L-elsbetiae_contig15381.3806.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 2.580e-18 Identity = 71/172 (41.28%), Postives = 89/172 (51.74%), Query Frame = 1
Query: 205 DVPRVVRRP---------KNTVGG-----GGVGVAKGPGDDPGRRVGDLLGRPSIAADGRRSSAGRASGGFNNFASSNGDSDGGXXXXXXXXXXXXXXXXXXGANARNAAPDHSPTGRNEVSDSAFSARSGGGGGVSMRAAEGLVASRIASFDPFSYSKIDAQSAGGTPKNA 678
++PR++RRP + T+ G G + G G R+G GRPSIA DGRRSSAGRASGG F N+ A D +G +AF R GGGGG SM AAEG+VASRIA++DPFSYS+ DAQS+GGTP++A
Sbjct: 724 ELPRILRRPAGAAAAAADRTTIDGARDARGASAASTGSG-----RIGGAGGRPSIATDGRRSSAGRASGGAGVF------------------------------NSDEAGEDGRSSG-----STAFGERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSSGGTPRHA 855
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 91.7 |
Seed ortholog evalue | 4.6e-16 |
Seed eggNOG ortholog | 2880.D7FH38 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | response to abiotic stimulus |
EggNOG OGs | COG0666@1,KOG4177@2759 |
COG Functional cat. | G |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 2 |
Model size | 684 |
Cds size | 639 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815627.2187498-UTR-L-elsbetiae_contig15381:925..928 | 1622815627.2187498-UTR-L-elsbetiae_contig15381:925..928 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15381 926..928 - |
1691683000.0168614-UTR-L-elsbetiae_contig15381:925..928 | 1691683000.0168614-UTR-L-elsbetiae_contig15381:925..928 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15381 926..928 - |
1622815627.2588303-UTR-L-elsbetiae_contig15381:2077..2119 | 1622815627.2588303-UTR-L-elsbetiae_contig15381:2077..2119 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15381 2078..2119 - |
1691683000.0625908-UTR-L-elsbetiae_contig15381:2077..2119 | 1691683000.0625908-UTR-L-elsbetiae_contig15381:2077..2119 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15381 2078..2119 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815627.2324162-CDS-L-elsbetiae_contig15381:928..1067 | 1622815627.2324162-CDS-L-elsbetiae_contig15381:928..1067 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15381 929..1067 - |
1691683000.029735-CDS-L-elsbetiae_contig15381:928..1067 | 1691683000.029735-CDS-L-elsbetiae_contig15381:928..1067 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15381 929..1067 - |
1622815627.244728-CDS-L-elsbetiae_contig15381:1577..2077 | 1622815627.244728-CDS-L-elsbetiae_contig15381:1577..2077 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15381 1578..2077 - |
1691683000.0485878-CDS-L-elsbetiae_contig15381:1577..2077 | 1691683000.0485878-CDS-L-elsbetiae_contig15381:1577..2077 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15381 1578..2077 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15381.3806.1 >prot_L-elsbetiae_contig15381.3806.1 ID=prot_L-elsbetiae_contig15381.3806.1|Name=mRNA_L-elsbetiae_contig15381.3806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MEESLAAAQAPASGRPSPEAGGGGGGSGSGSGTDSDVVMDVDDDDDDSGG GGGEDVPRVVRRPKNTVGGGGVGVAKGPGDDPGRRVGDLLGRPSIAADGR RSSAGRASGGFNNFASSNGDSDGGGRDGDGNGYSGFGGGDGGGANARNAA PDHSPTGRNEVSDSAFSARSGGGGGVSMRAAEGLVASRIASFDPFSYSKI DAQSAGGTPKNA* back to topmRNA from alignment at L-elsbetiae_contig15381:926..2119- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig15381.3806.1 ID=mRNA_L-elsbetiae_contig15381.3806.1|Name=mRNA_L-elsbetiae_contig15381.3806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig15381:926..2119- (Laminarionema elsbetiae ELsaHSoW15) CGTCAGCAGCAGAGCGGCGCGAGAGGGTCGCCGTCGAGAACGATGGAGGA
GTCCTTAGCAGCGGCGCAGGCCCCGGCCTCGGGGCGCCCGAGTCCCGAGG
CCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCACGGACAGCGAC
GTGGTGATGGACGTCGACGACGACGACGATGACAGCGGAGGCGGCGGCGG
TGAGGACGTGCCGCGAGTAGTTCGCCGACCGAAGAACACCGTCGGCGGCG
GCGGCGTCGGGGTGGCCAAGGGTCCCGGTGACGATCCCGGAAGGAGGGTC
GGGGATCTCCTCGGGAGGCCGTCGATCGCGGCGGACGGTCGCCGGTCGTC
GGCCGGGAGGGCGAGCGGTGGCTTCAACAACTTCGCCAGCAGCAACGGCG
ACAGCGACGGCGGCGGCCGCGACGGCGATGGCAACGGCTACAGCGGCTTC
GGCGGCGGCGATGGCGGCGGCGCTAACGCCCGCAACGCCGCGCCTGACCA
CAGCCCGACGGGCCGCAACGAGGTGTCGGACAGCGCTTTCAGGTATGGTC
AGGGTTCGTTCAAGCTAGAGTGCGCATGTTTGTGTTTGTGTTTGTGTGTG
TGTGTGTGGCTGTTGAAAGTTTGGTGCCCTGTATCTCGTTGAAAAGTCAA
CTTTAATAAATCAGGACAGGCGCACCAACCCTTTATACATCTGTAGTAGT
TACCCCTGAATTACTCGGATCCTCGTCTGAGTTTGGTACGTAAATACCCC
GAGTACCTCGGGGTATCCAAACGAATAAATAGGTTACAAAAGCGCCGTTG
AACGTGTGGGTATCCATCCATCCGTAAGAAAAATGAATAAAAAAAGCGCC
CCACGATGACTTCGTGCATATACATACCTACATTGGATGTGTTTTCGAGA
GCAAGTTACTAATGTACATGACCAAACGTTAAAATCTGACTCTTTATCCC
CGCTCCCGGCCGGCGCCCGCACTCTCGTCCCCCCCCCCCTTGACGCGAAC
CAACCCGGATCCTCATCCCCCGCGCCATCGCCCGCCTCACAAATTACCGC
AGCGCGAGATCGGGCGGCGGCGGCGGCGTCAGCATGAGGGCGGCCGAGGG
GCTCGTGGCCAGCCGGATAGCGTCGTTCGACCCCTTCTCGTATTCCAAGA
TTGACGCGCAAAGCGCCGGTGGAACGCCCAAAAATGCATAGCGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig15381:926..2119- >mRNA_L-elsbetiae_contig15381.3806.1 ID=mRNA_L-elsbetiae_contig15381.3806.1|Name=mRNA_L-elsbetiae_contig15381.3806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig15381:926..2119- (Laminarionema elsbetiae ELsaHSoW15) ATGGAGGAGTCCTTAGCAGCGGCGCAGGCCCCGGCCTCGGGGCGCCCGAG TCCCGAGGCCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCACGG ACAGCGACGTGGTGATGGACGTCGACGACGACGACGATGACAGCGGAGGC GGCGGCGGTGAGGACGTGCCGCGAGTAGTTCGCCGACCGAAGAACACCGT CGGCGGCGGCGGCGTCGGGGTGGCCAAGGGTCCCGGTGACGATCCCGGAA GGAGGGTCGGGGATCTCCTCGGGAGGCCGTCGATCGCGGCGGACGGTCGC CGGTCGTCGGCCGGGAGGGCGAGCGGTGGCTTCAACAACTTCGCCAGCAG CAACGGCGACAGCGACGGCGGCGGCCGCGACGGCGATGGCAACGGCTACA GCGGCTTCGGCGGCGGCGATGGCGGCGGCGCTAACGCCCGCAACGCCGCG CCTGACCACAGCCCGACGGGCCGCAACGAGGTGTCGGACAGCGCTTTCAG ATGGAGGAGTCCTTAGCAGCGGCGCAGGCCCCGGCCTCGGGGCGCCCGAG TCCCGAGGCCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCACGG ACAGCGACGTGGTGATGGACGTCGACGACGACGACGATGACAGCGGAGGC GGCGGCGGTGAGGACGTGCCGCGAGTAGTTCGCCGACCGAAGAACACCGT CGGCGGCGGCGGCGTCGGGGTGGCCAAGGGTCCCGGTGACGATCCCGGAA GGAGGGTCGGGGATCTCCTCGGGAGGCCGTCGATCGCGGCGGACGGTCGC CGGTCGTCGGCCGGGAGGGCGAGCGGTGGCTTCAACAACTTCGCCAGCAG CAACGGCGACAGCGACGGCGGCGGCCGCGACGGCGATGGCAACGGCTACA GCGGCTTCGGCGGCGGCGATGGCGGCGGCGCTAACGCCCGCAACGCCGCG CCTGACCACAGCCCGACGGGCCGCAACGAGGTGTCGGACAGCGCTTTCAG CGCGAGATCGGGCGGCGGCGGCGGCGTCAGCATGAGGGCGGCCGAGGGGC TCGTGGCCAGCCGGATAGCGTCGTTCGACCCCTTCTCGTATTCCAAGATT GACGCGCAAAGCGCCGGTGGAACGCCCAAAAATGCATAGCGCGAGATCGG GCGGCGGCGGCGGCGTCAGCATGAGGGCGGCCGAGGGGCTCGTGGCCAGC CGGATAGCGTCGTTCGACCCCTTCTCGTATTCCAAGATTGACGCGCAAAG CGCCGGTGGAACGCCCAAAAATGCATAG back to top
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