mRNA_L-elsbetiae_contig15381.3806.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15381.3806.1
Unique NamemRNA_L-elsbetiae_contig15381.3806.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15381.3806.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.580e-18
Identity = 71/172 (41.28%), Postives = 89/172 (51.74%), Query Frame = 1
Query:  205 DVPRVVRRP---------KNTVGG-----GGVGVAKGPGDDPGRRVGDLLGRPSIAADGRRSSAGRASGGFNNFASSNGDSDGGXXXXXXXXXXXXXXXXXXGANARNAAPDHSPTGRNEVSDSAFSARSGGGGGVSMRAAEGLVASRIASFDPFSYSKIDAQSAGGTPKNA 678
            ++PR++RRP         + T+ G     G    + G G     R+G   GRPSIA DGRRSSAGRASGG   F                              N+  A  D   +G      +AF  R GGGGG SM AAEG+VASRIA++DPFSYS+ DAQS+GGTP++A
Sbjct:  724 ELPRILRRPAGAAAAAADRTTIDGARDARGASAASTGSG-----RIGGAGGRPSIATDGRRSSAGRASGGAGVF------------------------------NSDEAGEDGRSSG-----STAFGERPGGGGGFSMGAAEGIVASRIAAYDPFSYSQKDAQSSGGTPRHA 855          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15381.3806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI2.580e-1841.28Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15381contigL-elsbetiae_contig15381:926..2119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue4.6e-16
Seed eggNOG ortholog2880.D7FH38
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size684
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15381.3806.1prot_L-elsbetiae_contig15381.3806.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15381 929..2077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.2187498-UTR-L-elsbetiae_contig15381:925..9281622815627.2187498-UTR-L-elsbetiae_contig15381:925..928Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15381 926..928 -
1691683000.0168614-UTR-L-elsbetiae_contig15381:925..9281691683000.0168614-UTR-L-elsbetiae_contig15381:925..928Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15381 926..928 -
1622815627.2588303-UTR-L-elsbetiae_contig15381:2077..21191622815627.2588303-UTR-L-elsbetiae_contig15381:2077..2119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15381 2078..2119 -
1691683000.0625908-UTR-L-elsbetiae_contig15381:2077..21191691683000.0625908-UTR-L-elsbetiae_contig15381:2077..2119Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15381 2078..2119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.2324162-CDS-L-elsbetiae_contig15381:928..10671622815627.2324162-CDS-L-elsbetiae_contig15381:928..1067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15381 929..1067 -
1691683000.029735-CDS-L-elsbetiae_contig15381:928..10671691683000.029735-CDS-L-elsbetiae_contig15381:928..1067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15381 929..1067 -
1622815627.244728-CDS-L-elsbetiae_contig15381:1577..20771622815627.244728-CDS-L-elsbetiae_contig15381:1577..2077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15381 1578..2077 -
1691683000.0485878-CDS-L-elsbetiae_contig15381:1577..20771691683000.0485878-CDS-L-elsbetiae_contig15381:1577..2077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15381 1578..2077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15381.3806.1

>prot_L-elsbetiae_contig15381.3806.1 ID=prot_L-elsbetiae_contig15381.3806.1|Name=mRNA_L-elsbetiae_contig15381.3806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=213bp
MEESLAAAQAPASGRPSPEAGGGGGGSGSGSGTDSDVVMDVDDDDDDSGG
GGGEDVPRVVRRPKNTVGGGGVGVAKGPGDDPGRRVGDLLGRPSIAADGR
RSSAGRASGGFNNFASSNGDSDGGGRDGDGNGYSGFGGGDGGGANARNAA
PDHSPTGRNEVSDSAFSARSGGGGGVSMRAAEGLVASRIASFDPFSYSKI
DAQSAGGTPKNA*
back to top

mRNA from alignment at L-elsbetiae_contig15381:926..2119-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15381.3806.1 ID=mRNA_L-elsbetiae_contig15381.3806.1|Name=mRNA_L-elsbetiae_contig15381.3806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig15381:926..2119- (Laminarionema elsbetiae ELsaHSoW15)
CGTCAGCAGCAGAGCGGCGCGAGAGGGTCGCCGTCGAGAACGATGGAGGA GTCCTTAGCAGCGGCGCAGGCCCCGGCCTCGGGGCGCCCGAGTCCCGAGG CCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCACGGACAGCGAC GTGGTGATGGACGTCGACGACGACGACGATGACAGCGGAGGCGGCGGCGG TGAGGACGTGCCGCGAGTAGTTCGCCGACCGAAGAACACCGTCGGCGGCG GCGGCGTCGGGGTGGCCAAGGGTCCCGGTGACGATCCCGGAAGGAGGGTC GGGGATCTCCTCGGGAGGCCGTCGATCGCGGCGGACGGTCGCCGGTCGTC GGCCGGGAGGGCGAGCGGTGGCTTCAACAACTTCGCCAGCAGCAACGGCG ACAGCGACGGCGGCGGCCGCGACGGCGATGGCAACGGCTACAGCGGCTTC GGCGGCGGCGATGGCGGCGGCGCTAACGCCCGCAACGCCGCGCCTGACCA CAGCCCGACGGGCCGCAACGAGGTGTCGGACAGCGCTTTCAGGTATGGTC AGGGTTCGTTCAAGCTAGAGTGCGCATGTTTGTGTTTGTGTTTGTGTGTG TGTGTGTGGCTGTTGAAAGTTTGGTGCCCTGTATCTCGTTGAAAAGTCAA CTTTAATAAATCAGGACAGGCGCACCAACCCTTTATACATCTGTAGTAGT TACCCCTGAATTACTCGGATCCTCGTCTGAGTTTGGTACGTAAATACCCC GAGTACCTCGGGGTATCCAAACGAATAAATAGGTTACAAAAGCGCCGTTG AACGTGTGGGTATCCATCCATCCGTAAGAAAAATGAATAAAAAAAGCGCC CCACGATGACTTCGTGCATATACATACCTACATTGGATGTGTTTTCGAGA GCAAGTTACTAATGTACATGACCAAACGTTAAAATCTGACTCTTTATCCC CGCTCCCGGCCGGCGCCCGCACTCTCGTCCCCCCCCCCCTTGACGCGAAC CAACCCGGATCCTCATCCCCCGCGCCATCGCCCGCCTCACAAATTACCGC AGCGCGAGATCGGGCGGCGGCGGCGGCGTCAGCATGAGGGCGGCCGAGGG GCTCGTGGCCAGCCGGATAGCGTCGTTCGACCCCTTCTCGTATTCCAAGA TTGACGCGCAAAGCGCCGGTGGAACGCCCAAAAATGCATAGCGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15381:926..2119-

>mRNA_L-elsbetiae_contig15381.3806.1 ID=mRNA_L-elsbetiae_contig15381.3806.1|Name=mRNA_L-elsbetiae_contig15381.3806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1278bp|location=Sequence derived from alignment at L-elsbetiae_contig15381:926..2119- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGTCCTTAGCAGCGGCGCAGGCCCCGGCCTCGGGGCGCCCGAG
TCCCGAGGCCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCACGG
ACAGCGACGTGGTGATGGACGTCGACGACGACGACGATGACAGCGGAGGC
GGCGGCGGTGAGGACGTGCCGCGAGTAGTTCGCCGACCGAAGAACACCGT
CGGCGGCGGCGGCGTCGGGGTGGCCAAGGGTCCCGGTGACGATCCCGGAA
GGAGGGTCGGGGATCTCCTCGGGAGGCCGTCGATCGCGGCGGACGGTCGC
CGGTCGTCGGCCGGGAGGGCGAGCGGTGGCTTCAACAACTTCGCCAGCAG
CAACGGCGACAGCGACGGCGGCGGCCGCGACGGCGATGGCAACGGCTACA
GCGGCTTCGGCGGCGGCGATGGCGGCGGCGCTAACGCCCGCAACGCCGCG
CCTGACCACAGCCCGACGGGCCGCAACGAGGTGTCGGACAGCGCTTTCAG
ATGGAGGAGTCCTTAGCAGCGGCGCAGGCCCCGGCCTCGGGGCGCCCGAG
TCCCGAGGCCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCAGCGGCACGG
ACAGCGACGTGGTGATGGACGTCGACGACGACGACGATGACAGCGGAGGC
GGCGGCGGTGAGGACGTGCCGCGAGTAGTTCGCCGACCGAAGAACACCGT
CGGCGGCGGCGGCGTCGGGGTGGCCAAGGGTCCCGGTGACGATCCCGGAA
GGAGGGTCGGGGATCTCCTCGGGAGGCCGTCGATCGCGGCGGACGGTCGC
CGGTCGTCGGCCGGGAGGGCGAGCGGTGGCTTCAACAACTTCGCCAGCAG
CAACGGCGACAGCGACGGCGGCGGCCGCGACGGCGATGGCAACGGCTACA
GCGGCTTCGGCGGCGGCGATGGCGGCGGCGCTAACGCCCGCAACGCCGCG
CCTGACCACAGCCCGACGGGCCGCAACGAGGTGTCGGACAGCGCTTTCAG
CGCGAGATCGGGCGGCGGCGGCGGCGTCAGCATGAGGGCGGCCGAGGGGC
TCGTGGCCAGCCGGATAGCGTCGTTCGACCCCTTCTCGTATTCCAAGATT
GACGCGCAAAGCGCCGGTGGAACGCCCAAAAATGCATAGCGCGAGATCGG
GCGGCGGCGGCGGCGTCAGCATGAGGGCGGCCGAGGGGCTCGTGGCCAGC
CGGATAGCGTCGTTCGACCCCTTCTCGTATTCCAAGATTGACGCGCAAAG
CGCCGGTGGAACGCCCAAAAATGCATAG
back to top