mRNA_L-elsbetiae_contig15378.3803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15378.3803.1
Unique NamemRNA_L-elsbetiae_contig15378.3803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15378.3803.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 8.440e-6
Identity = 25/35 (71.43%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   10 MVDVVSKRCTHDGCTKQPSYGKTGGK-AEYCRDHA 111
            MVDVVSKRC H GCTK+PSYG  G K AE C  HA
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHA 35
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15378.3803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI8.440e-671.43EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15378contigL-elsbetiae_contig15378:15..2745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size735
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15378.3803.1prot_L-elsbetiae_contig15378.3803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15378 24..2598 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.8858247-UTR-L-elsbetiae_contig15378:14..231622815626.8858247-UTR-L-elsbetiae_contig15378:14..23Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15378 15..23 +
1691682999.7848284-UTR-L-elsbetiae_contig15378:14..231691682999.7848284-UTR-L-elsbetiae_contig15378:14..23Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15378 15..23 +
1622815626.9258945-UTR-L-elsbetiae_contig15378:2598..27451622815626.9258945-UTR-L-elsbetiae_contig15378:2598..2745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15378 2599..2745 +
1691682999.8166587-UTR-L-elsbetiae_contig15378:2598..27451691682999.8166587-UTR-L-elsbetiae_contig15378:2598..2745Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15378 2599..2745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.8983588-CDS-L-elsbetiae_contig15378:23..5371622815626.8983588-CDS-L-elsbetiae_contig15378:23..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15378 24..537 +
1691682999.797326-CDS-L-elsbetiae_contig15378:23..5371691682999.797326-CDS-L-elsbetiae_contig15378:23..537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15378 24..537 +
1622815626.9115973-CDS-L-elsbetiae_contig15378:2533..25981622815626.9115973-CDS-L-elsbetiae_contig15378:2533..2598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15378 2534..2598 +
1691682999.8070712-CDS-L-elsbetiae_contig15378:2533..25981691682999.8070712-CDS-L-elsbetiae_contig15378:2533..2598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15378 2534..2598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15378.3803.1

>prot_L-elsbetiae_contig15378.3803.1 ID=prot_L-elsbetiae_contig15378.3803.1|Name=mRNA_L-elsbetiae_contig15378.3803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
MVDVVSKRCTHDGCTKQPSYGKTGGKAEYCRDHAKDGMVNVKHRKCTFPG
CTTIANYGGENTGTRKFCARHAEEGMVRLSGRSRGDSKRSGEADDAGARG
SGTASGSRHTSNRASRSGSGGDLHPVRVKRKGADNEVPDDDNLTACPEPG
DAGVKTEDMELPCEMEPWKAAGRTSAARTKRRKAVAGQAGGP*
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mRNA from alignment at L-elsbetiae_contig15378:15..2745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15378.3803.1 ID=mRNA_L-elsbetiae_contig15378.3803.1|Name=mRNA_L-elsbetiae_contig15378.3803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2731bp|location=Sequence derived from alignment at L-elsbetiae_contig15378:15..2745+ (Laminarionema elsbetiae ELsaHSoW15)
AAAGACGAGATGGTGGACGTCGTCAGCAAGAGATGCACCCACGACGGTTG
CACGAAGCAGCCGTCATACGGCAAGACTGGCGGCAAGGCGGAGTACTGTC
GTGACCATGCCAAAGATGGGATGGTGAACGTGAAGCACAGGAAATGCACC
TTTCCCGGGTGCACCACAATAGCTAACTACGGCGGGGAAAACACTGGCAC
CCGGAAGTTCTGCGCACGGCACGCCGAAGAAGGGATGGTCCGTCTTTCTG
GCCGGTCCAGGGGAGACAGCAAAAGAAGCGGTGAAGCCGATGACGCCGGA
GCAAGGGGTAGCGGCACAGCTAGTGGGAGCAGGCACACCAGCAATCGAGC
CAGCCGGAGTGGTAGCGGTGGGGACTTGCATCCGGTCCGGGTAAAACGAA
AAGGAGCTGACAACGAAGTGCCCGACGACGATAATTTGACGGCATGTCCG
GAGCCAGGCGACGCGGGGGTCAAGACGGAGGACATGGAATTGCCTTGCGA
GATGGAGCCGTGGAAAGCTGCAGGTACATTCAAACAAGTATATAGTTGTT
ATCTCGGGGTGCTGTTGTATTTGCTGGTGGATGTAGAAGAGACAATGGTT
TTTGAGGCAGATCCAGGTGAAGTCGTATGTAGTTGGAGCACAACCGAATA
GAACTACTGTACAGTGGCTACAACCGCTGCAGCGCCCAGCGGCGAACAGG
TAGAGTAACGGCATTGAGATTGGGCTCGGACTTTTGTCACCGTACATCAC
ACAAGATACCACGCCCCCGGTGGATACATCTGAGCCCCTGGTTTTATTTT
CACCGAGGGTGGTATTTTGTGGGTGGGGTGGTACCTATTCTGGCACGGGT
GATAAAGTGCATGTGTTGTGGGGGCCGTCAAAGGGAGCTGGTAACGGTGG
GGTGTTATTACTGTCCGCGAGAAAAATTGCTGCAGTCTGCAGGAGTTAGC
TTGAAACGGAAATAAATGGGCGTGAAAAATATCGAGGGGAGGCGTCTTAA
GCACCTGCAACACAGTCTATGCACACATGAAACTCGCGCATGTACATACG
TACCGTAAGTTGCTCTGATCTCCCTCCCCCCCCTACCTTTTGGCCTCGAA
GCACGACTTGTTGAATTACCTCCCAGAGGGGAAGTGGTTTTGGAGGCAAA
CATAAAAATCCGTCTGGGGTAGCGGCTTTTTGTGACACCCCCCCGGGGGG
TGGGTGTACTCCACTCACTACCTCCCGTGGTAATTTCCACACTCTCAACT
GTTTGTGTGAAACAAGGACAAAAATGATTTGGAACGGAATACCACGTCCG
GTGTTAACTGCTGGCATTTACGGTGCCTTGTGGGGTGTCCACAAGGTAGA
GCAACTTACAGTATGTTTGAGCGTGTTTTTGGCCTCCCCCCTCCGGGTAG
ATTTCCCCCCGGGGTAGTGCTGTAAAAAAGAAGACCCCCTCCCTGGTTAG
CTACCTCGGTACTTTGACTTCCCCACAAGGGGTGTGCGTTCGAGAAAAAG
AAGTTGCCACCGGGGGGGTTATCGGGACAACTTTTGGTAGATAGACACGC
CATCAAACATCAAACCCGTGTTGAAATGACAGAGTAAAAACAAAATAGCC
CATGGAAATACGGGCCATCAACACCTTGTGTGACACGAAATTCCACATCG
CATGGAGGTTGAAAGCCGTCTGCGTTCCCCGCTTGCATATCCGCAATAAC
ATATCCATTTCTTACCATGGCACGCTTCGAGCGGGTGAAAATATCATGTT
AACCATAAAACCGGACCCCACGAAGACTGCCGTTGTCTACCTACGTACCC
ACAAGAAATATCATAATAGCATGCCCTGTGGTGGACATGTCAACCGAATA
CACTAGGACATGCATGGTTCACCGCGCGCACTATTGTAAGGCACGAGCAA
AAACAAAGAAGGAAAAAAGAAAAAGCCAGCAGACCCGACCCCAGCTGGAC
TGATCTCGCAACTACCGATCGTCACGCGGGGTGATAGCAGGGGCTCATTG
GTTTCATGCTTAACCTCACGGGGGGGTGTGTTATCTTTTTTTCAGTAGTC
TGGGTGATATTTTGGCCTCGGCTCTGTGTCTGGAAATATCGTCATCGGGG
GGATGGTTTCTATTGTGGGGGTGGCATCGTGTGTAGTTTACGGTAGATCG
ATGCTTGGTGTAAGCGCTGAAAAGCTACATGCTACAACTATGATGCAACA
TCGTACAGAGGAAGCCTGGTGCGCTCATTTCGCGTTTTGTTTTTCGATGG
CGCTACCCCGTGTGCAATAAACTACCCTGGTTTTGAACTGCTCTGCTCTT
GTCCGCCGTCGGCGCAGGCAGGTTTCGCTTTGTCACAATTTTCTGTACTT
CACAGAGAGGTTTTGGTGGTGTGCCACTTTGATGGCATAATTATTTTACA
TAACGAGCATCCGTGTGCTCTCCGGCGGTGTTTGTTTTACATCTAACCCC
GACCTTACCTGTTTGCTTGTCGTCCGGACGTGGCTCTTGTTCGCCCAATC
CTTTCTCCAATCGATGCAGGCCGGACTAGCGCAGCGAGGACGAAGCGGAG
AAAGGCCGTGGCGGGGCAAGCGGGAGGTCCCTGATGTATCTCACGAACAG
CAGCAGCAGCAGCAGCACAGTAGTGTAGGCGGCGAACCGTGGCGGGACAG
CGTGGCCACGAGCGCCTGCAAACAGCTGCATCACTGCCGAGCGTACTGCT
GAAAATGAGCGACCAGCTTTTGTTGATCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15378:15..2745+

>mRNA_L-elsbetiae_contig15378.3803.1 ID=mRNA_L-elsbetiae_contig15378.3803.1|Name=mRNA_L-elsbetiae_contig15378.3803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig15378:15..2745+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACGTCGTCAGCAAGAGATGCACCCACGACGGTTGCACGAAGCA
GCCGTCATACGGCAAGACTGGCGGCAAGGCGGAGTACTGTCGTGACCATG
CCAAAGATGGGATGGTGAACGTGAAGCACAGGAAATGCACCTTTCCCGGG
TGCACCACAATAGCTAACTACGGCGGGGAAAACACTGGCACCCGGAAGTT
CTGCGCACGGCACGCCGAAGAAGGGATGGTCCGTCTTTCTGGCCGGTCCA
GGGGAGACAGCAAAAGAAGCGGTGAAGCCGATGACGCCGGAGCAAGGGGT
AGCGGCACAGCTAGTGGGAGCAGGCACACCAGCAATCGAGCCAGCCGGAG
TGGTAGCGGTGGGGACTTGCATCCGGTCCGGGTAAAACGAAAAGGAGCTG
ACAACGAAGTGCCCGACGACGATAATTTGACGGCATGTCCGGAGCCAGGC
GACGCGGGGGTCAAGACGGAGGACATGGAATTGCCTTGCGAGATGGAGCC
GTGGAAAGCTGCAGATGGTGGACGTCGTCAGCAAGAGATGCACCCACGAC
GGTTGCACGAAGCAGCCGTCATACGGCAAGACTGGCGGCAAGGCGGAGTA
CTGTCGTGACCATGCCAAAGATGGGATGGTGAACGTGAAGCACAGGAAAT
GCACCTTTCCCGGGTGCACCACAATAGCTAACTACGGCGGGGAAAACACT
GGCACCCGGAAGTTCTGCGCACGGCACGCCGAAGAAGGGATGGTCCGTCT
TTCTGGCCGGTCCAGGGGAGACAGCAAAAGAAGCGGTGAAGCCGATGACG
CCGGAGCAAGGGGTAGCGGCACAGCTAGTGGGAGCAGGCACACCAGCAAT
CGAGCCAGCCGGAGTGGTAGCGGTGGGGACTTGCATCCGGTCCGGGTAAA
ACGAAAAGGAGCTGACAACGAAGTGCCCGACGACGATAATTTGACGGCAT
GTCCGGAGCCAGGCGACGCGGGGGTCAAGACGGAGGACATGGAATTGCCT
TGCGAGATGGAGCCGTGGAAAGCTGCAGGCCGGACTAGCGCAGCGAGGAC
GAAGCGGAGAAAGGCCGTGGCGGGGCAAGCGGGAGGTCCCTGAGCCGGAC
TAGCGCAGCGAGGACGAAGCGGAGAAAGGCCGTGGCGGGGCAAGCGGGAG
GTCCCTGA
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