mRNA_L-elsbetiae_contig15376.3802.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15376.3802.1
Unique NamemRNA_L-elsbetiae_contig15376.3802.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15376.3802.1 vs. uniprot
Match: D7FK06_ECTSI (CRAL/TRIO domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK06_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 8.610e-82
Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 1 
Query:    1 EWRTSYKLDTILDEDLSGAGVSQVFYWSGFDRDGRPCLVFRACEHRKSDPDGASPTVEEKVRYYCQLLARGFRDFSPAYKFCLILDCRGAGTNVMDRKLFKVATPIIENNFPETQHATYVLPCNGMITMAWKV 399
            EWRT+YKLDTILDEDLSG GVS  FYWSGFDRDGRPCLVFRACEHRKSD DG SPTVEEKVRYYCQLL RGFRDFSPAYKFCLILDCRGAGTNVMDRKLFKVATPIIENNFPETQHATYVLPCNG+I MAWKV
Sbjct:   78 EWRTTYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKSDSDGGSPTVEEKVRYYCQLLERGFRDFSPAYKFCLILDCRGAGTNVMDRKLFKVATPIIENNFPETQHATYVLPCNGVIMMAWKV 210
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BLAST of mRNA_L-elsbetiae_contig15376.3802.1 vs. uniprot
Match: A0A6H5KAS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.570e-47
Identity = 87/132 (65.91%), Postives = 88/132 (66.67%), Query Frame = 1 
Query:    1 EWRTSYKLDTILDEDLSGAGVSQVFYWSGFDRDGRPCLVFRACEHRKSDPDGASPTVEEKVRYYCQLLARGFRDFSPAYKFCLILDCRGAGTNVMDRKLFKVATPIIENNFPETQHATYVLPCNGMITMAWK 396
            EWR +YKLDTILDEDLSG GVS  FYWSGFDRDGRPCLVFRACEHRKSD DGASPTVEEK                                      LFKVATPIIENNFPETQHATYVLPCNGMI MAWK
Sbjct:   78 EWRITYKLDTILDEDLSGTGVSHEFYWSGFDRDGRPCLVFRACEHRKSDSDGASPTVEEK--------------------------------------LFKVATPIIENNFPETQHATYVLPCNGMIMMAWK 171
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BLAST of mRNA_L-elsbetiae_contig15376.3802.1 vs. uniprot
Match: A0A835YGR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR8_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.480e-32
Identity = 63/138 (45.65%), Postives = 84/138 (60.87%), Query Frame = 1 
Query:    1 EWRTSYKLDT---ILDEDLSGAGVSQVFYWSGFDRDGRPCLVFRACEHRKS--DPDGASPTVEEKVRYYCQLLARGFRDFSPAYKFCLILDCRGAGTNVMDRKLFKVATPIIENNFPETQHATYVLPCNGMITMAWKV 399
            EWR +Y+++    ++DED S        YW GFDR+G PCLV+R   H  S  DPD         VRY+C LL  GFR ++PA+KF +++DCR  G   MD KL ++A P++ENN+PE Q ATYV+P      M WKV
Sbjct:   87 EWRVAYRVEGSPGLVDEDFSLFDELNELYWYGFDREGHPCLVWRPGVHSPSVTDPDNM-------VRYFCHLLEVGFRKYAPAHKFVMVIDCRDFGHRNMDWKLLRLAAPLLENNYPERQAATYVVPVGAFTVMTWKV 217
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BLAST of mRNA_L-elsbetiae_contig15376.3802.1 vs. uniprot
Match: A0A1J6IZV6_NICAT (Patellin-3 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1J6IZV6_NICAT)

HSP 1 Score: 51.2 bits (121), Expect = 8.110e-5
Identity = 34/124 (27.42%), Postives = 62/124 (50.00%), Query Frame = 1 
Query:    4 WRTSYKLDTILDEDLSGAGVSQVFYWSGFDRDGRPCL--VFRACEHRK--SDPDGASPTVEEKVRYYCQLLARGFR--DFSP--AYKFCLILDCRGAGTNVMDRKLFKVAT----PIIENNFPE 339
            WR  +K+D +L+EDLSG G+ +V Y  G D++G P     F A +  +   +       + + +R+  Q + +  R  DFSP     F  ++D + +      +K  + AT     ++++N+PE
Sbjct:  331 WRKEFKIDELLEEDLSGLGLEKVVYNHGVDKEGHPVCYNAFGAFQDNELYQNTFADKEKMNKFLRWRIQFMEKSIRNLDFSPDGICTFVQVIDLKNSPGLYFFKKELRQATNRALQLLQDNYPE 454
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15376.3802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK06_ECTSI8.610e-8293.23CRAL/TRIO domain containing protein n=1 Tax=Ectoca... [more]
A0A6H5KAS6_9PHAE4.570e-4765.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YGR8_9STRA7.480e-3245.65Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1J6IZV6_NICAT8.110e-527.42Patellin-3 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15376contigL-elsbetiae_contig15376:237..3686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.3
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D7FK06
KEGG koko:K15335,ko:K19625
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
EC2.1.1.203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-18_002930.1
Exons3
Model size399
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15376.3802.1prot_L-elsbetiae_contig15376.3802.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15376 237..3686 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.8141387-CDS-L-elsbetiae_contig15376:236..3411622815626.8141387-CDS-L-elsbetiae_contig15376:236..341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15376 237..341 -
1691682999.7553039-CDS-L-elsbetiae_contig15376:236..3411691682999.7553039-CDS-L-elsbetiae_contig15376:236..341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15376 237..341 -
1622815626.8292093-CDS-L-elsbetiae_contig15376:1452..15661622815626.8292093-CDS-L-elsbetiae_contig15376:1452..1566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15376 1453..1566 -
1691682999.767745-CDS-L-elsbetiae_contig15376:1452..15661691682999.767745-CDS-L-elsbetiae_contig15376:1452..1566Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15376 1453..1566 -
1622815626.8451343-CDS-L-elsbetiae_contig15376:3506..36861622815626.8451343-CDS-L-elsbetiae_contig15376:3506..3686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15376 3507..3686 -
1691682999.776439-CDS-L-elsbetiae_contig15376:3506..36861691682999.776439-CDS-L-elsbetiae_contig15376:3506..3686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15376 3507..3686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15376.3802.1

>prot_L-elsbetiae_contig15376.3802.1 ID=prot_L-elsbetiae_contig15376.3802.1|Name=mRNA_L-elsbetiae_contig15376.3802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
EWRTSYKLDTILDEDLSGAGVSQVFYWSGFDRDGRPCLVFRACEHRKSDP
DGASPTVEEKVRYYCQLLARGFRDFSPAYKFCLILDCRGAGTNVMDRKLF
KVATPIIENNFPETQHATYVLPCNGMITMAWKV
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mRNA from alignment at L-elsbetiae_contig15376:237..3686-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15376.3802.1 ID=mRNA_L-elsbetiae_contig15376.3802.1|Name=mRNA_L-elsbetiae_contig15376.3802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3450bp|location=Sequence derived from alignment at L-elsbetiae_contig15376:237..3686- (Laminarionema elsbetiae ELsaHSoW15)
GAATGGCGAACCTCGTACAAGCTGGACACCATCCTCGACGAGGACCTCTC
GGGTGCGGGCGTGAGCCAGGTGTTCTACTGGTCCGGGTTCGACCGGGATG
GCCGGCCGTGCCTCGTGTTCCGTGCCTGCGAGCACAGGAAGTCGGACCCG
GACGGTGCCAGCCCGACGGTGGAGGAAAAGGTGCGACCAATGTTATAGTG
TTTGGTCTTCGGGGCTTCTGTTGATCGTGTTGTGCGTTCGTTCCTTTGCG
GTGGTATGTATATATGTATGTACATACAATGGCCGGTCGTGGACATACCG
CAGGAGGGATCCACCCCCCACCCCCCCCCTCCGGTGTGACCCCGGTTGAG
TCGTCTAGCTAGTCGTAGTGGAGGAACGGGGCCAGTGGGGCAGACGATGA
ATAACCAAATAATGGGAGGGAAAAAAAAAGCCAAAAAAAAAAGCCAAAAA
AAATGCAAAATACGCTCACGAATAAAAGGGCTACTTTATCATCAGCGCAT
GAAATGTAGACGCCGCGCGTCGATGACAATCGCTCTGCCCGAGAAAGCTT
GCAGAGGGCTATTTCAAAGCGTACCTCCAACAATACAGTAGTGGGTACTC
AGGGCGAATTCGCGACCACCGCCCCCCCGCCGGAGGCACTTTTGATTCAG
TTTCACGCGATTTAACTTCCCTAGAGCAAGAACATAGGTGGGTTTTGACT
GTGTTTATTCACCAGCAGACGCGCCGAGTATCTTTTGTTAATTTGGGCGA
ATACTCTACTACTGCGCCGCATGTAGTAGTATAGTACTACAATACGACAA
CAGTGTGTTTACTGGCCCAGTACTCAGCACTATGTACCGTAGGTGACATA
AGATAAGACACCCCCTGGACCGATTTTCAAAGCTCAAGTACTCCACAGCA
AGCAGAGCGTCAGCCCCGAAAAGGGCGGCGTTGGAAAGATCTCATCGAGA
GCTGTCCGAAAATGTGGCGTTTGTGGTTCGAATCGTATTCGTTGCGGAGT
AACCAAGCTTTCAATCTCGGTCCAGGGGGTGTCTTATCTTATGTCACCTA
CGGTACCTTTTCGAGGTTGGGAGGGAGGTTTGAATCCCATGAGAGACAAC
GACGAACCAACAAGCATTGAGATGAATACCAGGACATTTCTTTTTTTCAG
TATATTTTATTTACTCTTTAAAAAAAAACAAAAAAAAAGAGGGGGGTCTC
AAGTTATCCTGTGACCACACGGGAATCGACCGCGTCAGTGTTGGATTAGT
ACACACTCATGGAAGATCCGACAATGACAGAAGGCGATCGGAAACGTTTT
TAAGGTTAAGACGACAACAACAACAACAGCAGCAACGACAACAACAAGTA
GATATACGTTCTGCTTGCTTGTCACACTACTGTTGTTTACTGTCAGATCC
TCTTGTGAGGCGGTTATGTATGTACCCACGCACTCCATGCAGCAAATGTG
TAAATATTACTATTCATTTACCCACTACAAGGACTACATTTATCTATTTA
TTTGGGCCTGACCGGCGAGAACCCGGCACGGGACACCCTGGCATTGTTAG
GGTACCAAGATAGAACTAGGGGGTGTATACCCCCGGTTGGTGATGTTGGC
TCGTTCATTTTTGTTTTTCACCTCGCAAATGTAGCGTGTATGTAGAGGGG
ATCGAGGGGCTCCACACTATTTGTCTTTGATTTTCATCGCGTGCTGACCT
TTCGGGTCCATTTTTATTTTCGTACACCATTTGTTTAGGTACAAGTTATC
CTGTGACCACGGGAATTGACCGCATCAAGTGTTTGATTGTACGGACATCG
GGAGGTACTGGGTGGAGGGATCGTAACGGTTTTTAATGTGAAGAAACAGC
AAGAACAATTTACCCACTAAATGACTACATAACCTGCCTCTTTTAAAAAA
TAAACAATGAATCAAAGACGGAACCTACCCCACACTAAACAGAGCAAGGA
CTCTATATGGGGTTCAAACTTTGGGCGTTTTCTACCATTTGCCGTGTACT
TGCTGTGCTGTTTTTTCGTTCATCGCTCACTCGCTTTTGACGCTGAGCCC
GCCCGCCATTCGCCCCACAACGCCGCCGCCGCGGCCGACCTTTTCGCGCG
CCGCCGTTTCTATCATCTAGGTCCGGTACTACTGCCAGCTGCTTGCGCGA
GGCTTTCGAGATTTCTCTCCGGCCTACAAGTTCTGCCTTATTCTAGACTG
CCGAGGGGCGGGCACCAACGTGATGGATCGAAAGGTGGGGGGGGGTATAG
GGCCACTCACTGACTTGATATATAATGCTTGCTTTTTTTTTTTTTTACTC
CATTTTTGCCTTGTTTAAATGCGCAAATTTCCCAAACAAAAGCATTATTT
CACGTTGTTTAATGCTCAGAAAAGGGACTGCTAATAATGCTCAAACGCCC
AATTTTCGGAGATAAAACTAAAATTTAAAGGCATAATTTGGCCTTATTAT
TTTCTCTTCGGTTTGTGCACAAAAAGCCCATTTGTGCCCTGTGCATATCA
AGTCAGGGCCTAGGTTGGAGCTTGTTGTAGGCCTGAGAAAAGGGAAATCC
GGTGTTATTTGCAGTTTGGTTCCTGGACTGTTGTAGCGGGGTTGGGGTGG
CGAAGTGGGTTGTTGGGGGCCGGCCCTTCAGGGCGTGGTAAGCTCTGCAA
AGAAACAGTATTATTATTTCTTGATGAGGTTTGGCGCTACATCCAAGTAT
GTTCCTATTTCTCCGAGTATTTTGGAGCGATTTACACAGGCTTCTTCTTG
TGTCCGAAAGAGCTTGCAATTACCCCCCCCGCCGGATTCTGTGCGCTGTT
TTTTGGTTGAGCTCTGCAAGCGTGGCGGCATTAGCTTTTGCTGTTTCAGC
AGAGATATCCCAGGGAAACGTATACACTGCACACGTGCATCAGATCAGAT
ACCTCTTGCTACAGGATGAAGGATGAATCTAATTTGTATAGCCGCCGGCG
TCTGGTTTCTGGCTGGCTGTCAAAAAGAGTATAGGTAAATATCTAAGTGT
TTCGTGTTTTTGTTTCTATTGCTGTATTGTAGTCAACGTACATATGATGA
TGTACCACGGGAATCGACCGCGTCAGTGGTGGGTTAGTGCGGGCGGATTC
ATGGAGATGTACTGGATAGAGAGAGATCGGAACGGTTTTTAGTGTGAAGA
CAACACACACACACACACACACATACGATGCACATTGCGATTGTTTTTGT
ATGCTTGACCGCCCACCCCTTGTTTCACTTTTCCCCGCCTGTTAAATGTG
TGTCCACAATGTGAATGAAGGCAACACACACACACACACACACACACATA
CGATGTACAAAACGATTTTTGCTTATGTATGCTTGCCACACACAGCTGTT
CAAGGTGGCGACGCCGATCATCGAAAACAACTTCCCCGAGACACAGCACG
CCACGTACGTTCTGCCGTGCAACGGGATGATCACGATGGCGTGGAAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15376:237..3686-

>mRNA_L-elsbetiae_contig15376.3802.1 ID=mRNA_L-elsbetiae_contig15376.3802.1|Name=mRNA_L-elsbetiae_contig15376.3802.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig15376:237..3686- (Laminarionema elsbetiae ELsaHSoW15)
GAATGGCGAACCTCGTACAAGCTGGACACCATCCTCGACGAGGACCTCTC
GGGTGCGGGCGTGAGCCAGGTGTTCTACTGGTCCGGGTTCGACCGGGATG
GCCGGCCGTGCCTCGTGTTCCGTGCCTGCGAGCACAGGAAGTCGGACCCG
GACGGTGCCAGCCCGACGGTGGAGGAAAAGGAATGGCGAACCTCGTACAA
GCTGGACACCATCCTCGACGAGGACCTCTCGGGTGCGGGCGTGAGCCAGG
TGTTCTACTGGTCCGGGTTCGACCGGGATGGCCGGCCGTGCCTCGTGTTC
CGTGCCTGCGAGCACAGGAAGTCGGACCCGGACGGTGCCAGCCCGACGGT
GGAGGAAAAGGTCCGGTACTACTGCCAGCTGCTTGCGCGAGGCTTTCGAG
ATTTCTCTCCGGCCTACAAGTTCTGCCTTATTCTAGACTGCCGAGGGGCG
GGCACCAACGTGATGGATCGAAAGGTCCGGTACTACTGCCAGCTGCTTGC
GCGAGGCTTTCGAGATTTCTCTCCGGCCTACAAGTTCTGCCTTATTCTAG
ACTGCCGAGGGGCGGGCACCAACGTGATGGATCGAAAGCTGTTCAAGGTG
GCGACGCCGATCATCGAAAACAACTTCCCCGAGACACAGCACGCCACGTA
CGTTCTGCCGTGCAACGGGATGATCACGATGGCGTGGAAGGTGCTGTTCA
AGGTGGCGACGCCGATCATCGAAAACAACTTCCCCGAGACACAGCACGCC
ACGTACGTTCTGCCGTGCAACGGGATGATCACGATGGCGTGGAAGGTG
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