mRNA_L-elsbetiae_contig15375.3801.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15375.3801.1
Unique NamemRNA_L-elsbetiae_contig15375.3801.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15375.3801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15375contigL-elsbetiae_contig15375:3713..4023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size250
Cds size249
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15375.3801.1prot_L-elsbetiae_contig15375.3801.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15375 3713..4022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.724562-CDS-L-elsbetiae_contig15375:3712..39021622815626.724562-CDS-L-elsbetiae_contig15375:3712..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15375 3713..3902 +
1691682999.7143457-CDS-L-elsbetiae_contig15375:3712..39021691682999.7143457-CDS-L-elsbetiae_contig15375:3712..3902Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15375 3713..3902 +
1622815626.7357337-CDS-L-elsbetiae_contig15375:3963..40221622815626.7357337-CDS-L-elsbetiae_contig15375:3963..4022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15375 3964..4022 +
1691682999.7253754-CDS-L-elsbetiae_contig15375:3963..40221691682999.7253754-CDS-L-elsbetiae_contig15375:3963..4022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15375 3964..4022 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.7454057-UTR-L-elsbetiae_contig15375:4022..40231622815626.7454057-UTR-L-elsbetiae_contig15375:4022..4023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15375 4023..4023 +
1691682999.7342167-UTR-L-elsbetiae_contig15375:4022..40231691682999.7342167-UTR-L-elsbetiae_contig15375:4022..4023Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15375 4023..4023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15375.3801.1

>prot_L-elsbetiae_contig15375.3801.1 ID=prot_L-elsbetiae_contig15375.3801.1|Name=mRNA_L-elsbetiae_contig15375.3801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
SATAGILGGRRQRPRLSTTGSGGCRVCRRTLHALLQPGLLVFFLAGPSGP
RTSGHIVVVGGGGEAQEGRGRSHEVSSVAVLW*
back to top

mRNA from alignment at L-elsbetiae_contig15375:3713..4023+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15375.3801.1 ID=mRNA_L-elsbetiae_contig15375.3801.1|Name=mRNA_L-elsbetiae_contig15375.3801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=311bp|location=Sequence derived from alignment at L-elsbetiae_contig15375:3713..4023+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGCCACCGCCGGCATCCTCGGCGGTAGGAGACAGCGGCCGCGGCTGAG
CACCACCGGGAGCGGCGGCTGCCGCGTCTGCCGACGAACTCTTCACGCTC
TTCTGCAGCCTGGCCTTCTTGTTTTTTTTCTTGCTGGACCAAGTGGACCC
CGCACTAGCGGACACATCGTCGTCGTCGGCGGCGGCGGCGGCGGCGGCGG
GTGCAGCGGCGGGTGCAGCCGCGGGTGCAGATGCGGCGGCGGCGGCGGCA
GAAGCACAAGAAGGGCGGGGGCGATCCCACGAAGTCTCGTCCGTGGCCGT
GTTGTGGTAGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15375:3713..4023+

>mRNA_L-elsbetiae_contig15375.3801.1 ID=mRNA_L-elsbetiae_contig15375.3801.1|Name=mRNA_L-elsbetiae_contig15375.3801.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig15375:3713..4023+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGCCACCGCCGGCATCCTCGGCGGTAGGAGACAGCGGCCGCGGCTGAG
CACCACCGGGAGCGGCGGCTGCCGCGTCTGCCGACGAACTCTTCACGCTC
TTCTGCAGCCTGGCCTTCTTGTTTTTTTTCTTGCTGGACCAAGTGGACCC
CGCACTAGCGGACACATCGTCGTCGTCGGCGGCGGCGGCGAGCGCCACCG
CCGGCATCCTCGGCGGTAGGAGACAGCGGCCGCGGCTGAGCACCACCGGG
AGCGGCGGCTGCCGCGTCTGCCGACGAACTCTTCACGCTCTTCTGCAGCC
TGGCCTTCTTGTTTTTTTTCTTGCTGGACCAAGTGGACCCCGCACTAGCG
GACACATCGTCGTCGTCGGCGGCGGCGGCGAAGCACAAGAAGGGCGGGGG
CGATCCCACGAAGTCTCGTCCGTGGCCGTGTTGTGGTAGAAGCACAAGAA
GGGCGGGGGCGATCCCACGAAGTCTCGTCCGTGGCCGTGTTGTGGTAG
back to top