mRNA_L-elsbetiae_contig15375.3800.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15375.3800.1
Unique NamemRNA_L-elsbetiae_contig15375.3800.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15375.3800.1 vs. uniprot
Match: D7G8X5_ECTSI (Similar to Fe65 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X5_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.570e-34
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:    1 VVDLRPCTLVWWSDAGDVWNGMALSGLLGGYGPRRYRNLGGGYYMTTLELGPEWATAAVAALGQGAA 201
            VVDLRPCTLVWWSDAGDVWNG++LSGLLGGYGPRRYRNLGGGYYMTTLE GPEWATAAVAALGQG A
Sbjct:  970 VVDLRPCTLVWWSDAGDVWNGVSLSGLLGGYGPRRYRNLGGGYYMTTLERGPEWATAAVAALGQGVA 1036
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15375.3800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8X5_ECTSI3.570e-3494.03Similar to Fe65 n=1 Tax=Ectocarpus siliculosus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15375contigL-elsbetiae_contig15375:3281..3649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.7748685-CDS-L-elsbetiae_contig15375:3280..36491622815626.7748685-CDS-L-elsbetiae_contig15375:3280..3649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15375 3281..3649 +
1691682999.74435-CDS-L-elsbetiae_contig15375:3280..36491691682999.74435-CDS-L-elsbetiae_contig15375:3280..3649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15375 3281..3649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15375.3800.1prot_L-elsbetiae_contig15375.3800.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15375 3281..3649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15375.3800.1

>prot_L-elsbetiae_contig15375.3800.1 ID=prot_L-elsbetiae_contig15375.3800.1|Name=mRNA_L-elsbetiae_contig15375.3800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
GGALAQRRHRRRRPLRPELQRCHVVAPAEVAVPAGAVAPEEPGQGHAVPD
VPGVRPPDQRARPQVYHGGRCFPGGSGGGGGGGGGGSFRSRRGPALLLGG
GVSSGRGGRRRGGPPLCACRTVA
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mRNA from alignment at L-elsbetiae_contig15375:3281..3649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15375.3800.1 ID=mRNA_L-elsbetiae_contig15375.3800.1|Name=mRNA_L-elsbetiae_contig15375.3800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=369bp|location=Sequence derived from alignment at L-elsbetiae_contig15375:3281..3649+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGCCCTGGCCCAGCGCCGCCACCGCCGCCGTCGCCCACTCCGGCC
CGAGCTCCAGCGTTGTCATGTAGTAGCCCCCGCCGAGGTTGCGGTACCGG
CGGGGGCCGTAGCCCCCGAGGAGCCCGGACAAGGCCATGCCGTTCCAGAC
GTCCCCGGCGTCCGACCACCAGACCAGCGTGCACGGCCTCAAGTCTACCA
CGGGGGCCGGTGTTTCCCCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGGAGCTTTCGGAGTCGTCGCGGACCGGCTCTCCTTCTTGGAGGA
GGTGTTTCCAGTGGTCGCGGCGGACGCCGGCGAGGGGGACCTCCGCTGTG
CGCGTGTCGAACCGTCGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15375:3281..3649+

>mRNA_L-elsbetiae_contig15375.3800.1 ID=mRNA_L-elsbetiae_contig15375.3800.1|Name=mRNA_L-elsbetiae_contig15375.3800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig15375:3281..3649+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCGCCCTGGCCCAGCGCCGCCACCGCCGCCGTCGCCCACTCCGGCC
CGAGCTCCAGCGTTGTCATGTAGTAGCCCCCGCCGAGGTTGCGGTACCGG
CGGGGGCCGTAGCCCCCGAGGAGCCCGGACAAGGCCATGCCGTTCCAGAC
GTCCCCGGCGTCCGACCACCAGACCAGCGTGCACGGCCTCAAGTCTACCA
CGGGGGCCGGTGTTTCCCCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGGAGCTTTCGGAGTCGTCGCGGACCGGCTCTCCTTCTTGGAGGA
GGTGTTTCCAGTGGTCGCGGCGGACGCCGGCGAGGGGGACCTCCGCTGTG
CGCGTGTCGAACCGTCGCTGGCGGCGCCCTGGCCCAGCGCCGCCACCGCC
GCCGTCGCCCACTCCGGCCCGAGCTCCAGCGTTGTCATGTAGTAGCCCCC
GCCGAGGTTGCGGTACCGGCGGGGGCCGTAGCCCCCGAGGAGCCCGGACA
AGGCCATGCCGTTCCAGACGTCCCCGGCGTCCGACCACCAGACCAGCGTG
CACGGCCTCAAGTCTACCACGGGGGCCGGTGTTTCCCCGGCGGCAGCGGC
GGCGGCGGCGGCGGCGGCGGCGGCGGGAGCTTTCGGAGTCGTCGCGGACC
GGCTCTCCTTCTTGGAGGAGGTGTTTCCAGTGGTCGCGGCGGACGCCGGC
GAGGGGGACCTCCGCTGTGCGCGTGTCGAACCGTCGCT
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