mRNA_L-elsbetiae_contig1537.3798.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1537.3798.1
Unique NamemRNA_L-elsbetiae_contig1537.3798.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: D8LNS9_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS9_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 6.250e-120
Identity = 178/210 (84.76%), Postives = 190/210 (90.48%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSMTAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRRGAGDGGKAGGPGAAQKRKRGCGDGMDTEAVQTTLEAMRIQV 670
            MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDG RNLLKLKVGVSMTAGL+EGATFYF+LTIPPSYPFHAPTV CT+RAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEH+ VN+ AA  L +NP LFR+QV R+L+G S+FGVQFESHR G    GK GG GAA KRKRG G+ MDTEAVQTTLEAMRIQ+
Sbjct:    1 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGTRNLLKLKVGVSMTAGLFEGATFYFILTIPPSYPFHAPTVVCTSRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHYAVNKPAAAALSSNPDLFREQVRRSLAGGSLFGVQFESHRLGGTADGKGGGHGAA-KRKRGFGESMDTEAVQTTLEAMRIQL 209
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A7S2CGK4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CGK4_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.890e-63
Identity = 98/164 (59.76%), Postives = 120/164 (73.17%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSMTAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQF 532
            +YT+ANLAA R+KKDI EL+QHR +   AST+++FPDG  NLL ++V V MT+G Y G +F F LTIPP+YPF+AP V CTTR WHPNI+ + G V LPIL+ DWRPVLSINTVV ALQL+F+EP   H  N  AA  L  NP LF  QV +TL+G + FG  F
Sbjct:   25 LYTRANLAASRIKKDIQELAQHRFSCNSASTAVEFPDGNENLLNIQVTVIMTSGFYRGGSFIFRLTIPPTYPFYAPEVTCTTRVWHPNINPNNGRVDLPILSIDWRPVLSINTVVLALQLLFLEPNPDHATNYAAAEALTKNPQLFESQVRQTLAGGNFFGFDF 188
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A485LTQ9_9STRA (Aste57867_24886 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTQ9_9STRA)

HSP 1 Score: 174 bits (440), Expect = 8.430e-51
Identity = 85/171 (49.71%), Postives = 111/171 (64.91%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSM--TAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            M ++ +LA LRV+KD+ EL++ +    HA+T I+FPDG+ NLL++ + +S+  T G Y    F F   IP +YPFHAP V    R WHPN+D+HTG V   IL KDWRPVLSINT++  LQL+F+EP+    VN+ AA  L  NP LFR QV  TL G + FG  F  H R
Sbjct:    1 MCSRLDLATLRVRKDVNELAKGKFTCAHATTQIEFPDGVDNLLRILIAISVGDTGGPYANGDFRFRFDIPRTYPFHAPLVFSLDRIWHPNVDVHTGRVMFSILGKDWRPVLSINTILLGLQLIFLEPSIESAVNQPAADTLVQNPQLFRKQVQHTLRGGTYFGFDFPEHPR 171
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: G4Z9T7_PHYSP (UBC core domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4Z9T7_PHYSP)

HSP 1 Score: 173 bits (439), Expect = 1.430e-50
Identity = 82/171 (47.95%), Postives = 114/171 (66.67%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKL--KVGVSMTAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            MY +++LAALRV+KD+ ELS+ +     A+T +DFPDG  N+L+L   + ++  +G +    F F + IP +YPFH P+V C TR WHPNID+ TG V +PIL  DWRPVLSINTV+  LQL+F+EP  H+ +N  AA  L+ NP  F+ +V + L G   +GV F +H R
Sbjct:    1 MYMRSDLAALRVRKDVNELSKAKFTCNQATTRVDFPDGADNMLRLIFTISIADVSGPFANGDFTFFVEIPKTYPFHPPSVKCLTRVWHPNIDMATGKVMMPILGTDWRPVLSINTVLLGLQLIFLEPVNHNILNPVAAEQLRQNPEQFKKEVQQILCGGKFYGVDFPAHPR 171
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A3F2RJX4_9STRA (UBC core domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJX4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.820e-49
Identity = 82/171 (47.95%), Postives = 110/171 (64.33%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSMT--AGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            MY +++ AALRV+KD+ ELS+ +   + A T +DFPDG  N+LK+   +S+   +G +    F F + IP +YPFHAP V C TR WHPN+D+ TG V +PIL KDWRPVLSINTV+  LQL+F+EP   +  N  AA  L  NP  F+ +V + L G   +GV F  H R
Sbjct:    1 MYMRSDFAALRVRKDVNELSKAKFTCSQAKTRVDFPDGAENMLKINFAISIADVSGPFANGDFTFFVEIPKTYPFHAPIVRCLTRVWHPNVDMTTGKVMMPILGKDWRPVLSINTVLLGLQLIFLEPGIDYVQNSVAAQQLHENPTQFKREVQQILCGGKYYGVDFPPHPR 171
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A7S2S1V2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1V2_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.880e-48
Identity = 87/165 (52.73%), Postives = 109/165 (66.06%), Query Frame = 2 
Query:   56 NLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSMTAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRRG 550
            NLA  RV+KD+ EL+  RL+   ASTS++ P+G ++L  + V VSM  GLY G +F F + IPPSYPFHAP V C TR  HPNIDL TG V LP+L +DWRPVL++NTVVF LQL+F+EP      N  AA  L   PA F  +V  TL G   FGV+F  ++ G
Sbjct:   40 NLATHRVQKDVQELTLQRLSCASASTSVELPNGCKDLSLVVVTVSMLGGLYRGGSFTFHILIPPSYPFHAPNVVCMTRVLHPNIDLETGQVLLPLLVEDWRPVLNLNTVVFGLQLLFLEPNPERACNIPAAQALVHVPAQFEARVRETLQGGVFFGVKFPYNQAG 204
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: K3WPB1_GLOUD (UBC core domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPB1_GLOUD)

HSP 1 Score: 166 bits (419), Expect = 1.090e-47
Identity = 81/171 (47.37%), Postives = 111/171 (64.91%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKL--KVGVSMTAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            M  +++ AALRV+KD+ ELS+ +     A T +DFPDG  N+LKL   + ++  AG Y    F F + IP +YPFHAP+V C T+ WHPNID  TG V +PI+ KDWRPVLSINTV+  LQL+F+EP     +N  AA  L  +PALF+ +  + L G   +G++F +H R
Sbjct:    1 MNMRSDFAALRVRKDVNELSKAKFTCHQAKTRVDFPDGANNMLKLIFTISIADVAGPYANGDFTFFVEIPKTYPFHAPSVTCLTKVWHPNIDPTTGKVMMPIIGKDWRPVLSINTVLLGLQLIFLEPGIDSVLNPMAAEKLHIHPALFKREAQQILCGGKFYGLEFPAHPR 171
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A067CNN5_SAPPC (UBC core domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CNN5_SAPPC)

HSP 1 Score: 166 bits (419), Expect = 1.340e-47
Identity = 84/176 (47.73%), Postives = 111/176 (63.07%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSMT--AGLYEGATFYFMLTIPPSYPFHAPTVACTT-----RAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            M ++ +LA LRV+KD+ EL++ +    HA+T I+FPDG+ NLL++ + +++T  A  Y    F F + IP +YPFH  T  C       R WHPNIDLHTG V   IL KDWRPVLSINT++  LQL+FIEP+   P+NE AA   + +P  FR  V  TL G   FG+QF  H R
Sbjct:    1 MCSRLDLATLRVRKDLNELAKGKFAVEHATTQIEFPDGVENLLRILITIAVTDHASAYANGDFKFRIEIPKAYPFHGTTPRCCAAASLDRIWHPNIDLHTGRVMFSILGKDWRPVLSINTILLGLQLIFIEPSIEFPMNEAAANAYRHSPQAFRRDVQLTLQGGVHFGLQFVRHPR 176
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A484E8K9_BRELC (UBC core domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8K9_BRELC)

HSP 1 Score: 165 bits (418), Expect = 2.070e-47
Identity = 80/171 (46.78%), Postives = 111/171 (64.91%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKLKVGVSMT--AGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            MY +++ AALRV+KD+ EL++ +     A T ++FPDG  N+L+L   +S+   +G +    F F++ IP +YPFHAP V C TR WHPNID+ TG V +PI+ KDWRPVLSINTV+  LQL+F+EP   H +N  AA  L  NP  F+ ++ + L G   +GV F  H R
Sbjct:    1 MYMRSDFAALRVRKDVNELAKAKFTCAQARTRVEFPDGANNMLQLIFTISIIDLSGPFANGDFTFLVDIPKTYPFHAPGVRCLTRVWHPNIDITTGKVMMPIIGKDWRPVLSINTVLLGLQLIFLEPGIDHALNITAAEQLHQNPESFKKEMQQILCGGRFYGVDFPPHPR 171
[Close]
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Match: A0A2P4XTT4_9STRA (Ubiquitin-conjugating enzyme E2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XTT4_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.930e-47
Identity = 77/171 (45.03%), Postives = 110/171 (64.33%), Query Frame = 2 
Query:   41 MYTKANLAALRVKKDIAELSQHRLNATHASTSIDFPDGIRNLLKL--KVGVSMTAGLYEGATFYFMLTIPPSYPFHAPTVACTTRAWHPNIDLHTGLVSLPILTKDWRPVLSINTVVFALQLMFIEPTEHHPVNEGAAMVLKTNPALFRDQVLRTLSGESMFGVQFESHRR 547
            MY +++ AALRV+KD+ EL++ +     A T ++FPDG+ N+L+L   + ++  +G Y    F F + IP +YPFHAP+V C TR WHPNI++ TG V + IL KDWRPVLSINTV+  LQL+F+EP   + +N  AA  L  NP  F+ +  + L G   +G+ F  H R
Sbjct:    1 MYMRSDFAALRVRKDVNELAKAKFTCAQAKTRVEFPDGVENMLRLIFMISIADISGPYANGDFTFFVEIPKTYPFHAPSVRCLTRVWHPNIEMATGKVMMSILGKDWRPVLSINTVLLGLQLIFLEPNVDYVLNPAAAEQLHQNPEQFKRETQQILCGGRFYGIDFPPHPR 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1537.3798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNS9_ECTSI6.250e-12084.76UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S2CGK4_9STRA1.890e-6359.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A485LTQ9_9STRA8.430e-5149.71Aste57867_24886 protein n=1 Tax=Aphanomyces stella... [more]
G4Z9T7_PHYSP1.430e-5047.95UBC core domain-containing protein n=3 Tax=Phytoph... [more]
A0A3F2RJX4_9STRA1.820e-4947.95UBC core domain-containing protein n=1 Tax=Phytoph... [more]
A0A7S2S1V2_9STRA4.880e-4852.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WPB1_GLOUD1.090e-4747.37UBC core domain-containing protein n=1 Tax=Globisp... [more]
A0A067CNN5_SAPPC1.340e-4747.73UBC core domain-containing protein n=2 Tax=Saprole... [more]
A0A484E8K9_BRELC2.070e-4746.78UBC core domain-containing protein n=1 Tax=Bremia ... [more]
A0A2P4XTT4_9STRA2.930e-4745.03Ubiquitin-conjugating enzyme E2 n=1 Tax=Phytophtho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1537contigL-elsbetiae_contig1537:1868..8094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size700
Cds size699
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1537.3798.1prot_L-elsbetiae_contig1537.3798.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1537 1868..8094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.5448005-CDS-L-elsbetiae_contig1537:1867..20791622815626.5448005-CDS-L-elsbetiae_contig1537:1867..2079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 1868..2079 -
1691682999.6005216-CDS-L-elsbetiae_contig1537:1867..20791691682999.6005216-CDS-L-elsbetiae_contig1537:1867..2079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 1868..2079 -
1622815626.5564122-CDS-L-elsbetiae_contig1537:3452..36761622815626.5564122-CDS-L-elsbetiae_contig1537:3452..3676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 3453..3676 -
1691682999.6108778-CDS-L-elsbetiae_contig1537:3452..36761691682999.6108778-CDS-L-elsbetiae_contig1537:3452..3676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 3453..3676 -
1622815626.5685816-CDS-L-elsbetiae_contig1537:3881..39661622815626.5685816-CDS-L-elsbetiae_contig1537:3881..3966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 3882..3966 -
1691682999.6192043-CDS-L-elsbetiae_contig1537:3881..39661691682999.6192043-CDS-L-elsbetiae_contig1537:3881..3966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 3882..3966 -
1622815626.5784411-CDS-L-elsbetiae_contig1537:4617..47011622815626.5784411-CDS-L-elsbetiae_contig1537:4617..4701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 4618..4701 -
1691682999.628031-CDS-L-elsbetiae_contig1537:4617..47011691682999.628031-CDS-L-elsbetiae_contig1537:4617..4701Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 4618..4701 -
1622815626.5885177-CDS-L-elsbetiae_contig1537:8000..80941622815626.5885177-CDS-L-elsbetiae_contig1537:8000..8094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 8001..8094 -
1691682999.6373131-CDS-L-elsbetiae_contig1537:8000..80941691682999.6373131-CDS-L-elsbetiae_contig1537:8000..8094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1537 8001..8094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1537.3798.1

>prot_L-elsbetiae_contig1537.3798.1 ID=prot_L-elsbetiae_contig1537.3798.1|Name=mRNA_L-elsbetiae_contig1537.3798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
VTGEGQGAAGCDKDVHEGKPGGLEGEERHRRAVAAPPQRYARIDQHRLPR
WNPKSAQTQGRGLDDGGAIRRGDVLLHAHDSSELPFSRSDGCLHHSGVAP
EHRPPHRARVSAHPHQGLATGAQHQHGGVRAPADVYRADGAPPGERGRRY
GPQDEPCLISGPGPPHVVWGEYVWRAVRVASTGGRGRRQGRGARGRAKTQ
TGVRGWYGHGGGANDAGGDAYTGGCAGGLAVS*
back to top

mRNA from alignment at L-elsbetiae_contig1537:1868..8094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1537.3798.1 ID=mRNA_L-elsbetiae_contig1537.3798.1|Name=mRNA_L-elsbetiae_contig1537.3798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6227bp|location=Sequence derived from alignment at L-elsbetiae_contig1537:1868..8094- (Laminarionema elsbetiae ELsaHSoW15)
GTTACCGGAGAGGGACAGGGGGCTGCGGGCTGTGACAAAGATGTACACGA
AGGCAAACCTGGCGGCCTTGAGGGTGAAGAAAGACATCGCCGAGGTGAGA
TAGGGCATATTTACCCGTGGTGTGTAACATTATTGTACAAGAAGAGCGTT
ATTAGTCTTCTCTACGAGCGGGCACACACTCGAGCGCTCGCTCATTAATA
TTTCTGGTTTGCTTTCCCGTGTTTTTTTGCACAGCCCCGCCCAACGTGGT
TTATCGAACGCGACACAACTACCCAATGCCGCCTTTCTCTGGGCGAGTCG
CTGGTCCAGCCTTTTGTTAAGAAGGACCACGAACCAAGCTTGCTGTTCGT
GAAGTGTAATGGAAACTGAACCGCGTTTCAACGTGTAGGCACTTCCGATG
ATGGCTCTTTGTACTGGTAATACTAATTCGCGACTCTCGACCGCCACCGC
CCGCGGGTTGCCCGTCCGGCTCCCTGCGTCTCTTCCTATGTACGCGGACT
TGCACGCATGACCTCCGCCTTTAGCTTCCGCCCTCCCTCACGTGATGCTC
CCTCCATATTTACGTCCGTGCTTGCATTCGTCGGACATCTTTACCTACTA
AAAAGTAGGAGTACATATCTAGCGGTATATCCATGTGTACATATGTAAGC
ATATATCAAACGATGCTTTCTTCTCCGGCGACAACTCGTGTTTCTCGCGA
AATAAAAGAGCCATGCAACCAGACAGGCAATCAGACGAAAAAAGATACAC
ATGCAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAAAG
AGAGAGCATATTTTTGCGGCTCGGTGGCAGCGGTTTTGCTGCTGCGTTCT
TTGTGTGTCTTCGCCGGTACATGTGTACGCCGAGCGATCGCTGTCGAAAT
TACTTCGCTGGCGGCGCTTGGAGACACGATAGCAACAGACCATCAAGCGA
GAACGTTGATGTTGTCGCGCGATAATCTTTGCCGAGCACACGAGGGCTGC
AGACACATCTTTTGCTTTACGTCGATACCAGGAGGTACAGGCAACAACAT
AATGATGAACGTAGCCTGTGAAGGAGCTCTGTTCTGGAGTGAGAATGCTG
CTGAGAAGGCATTTTTCTAGTAGTGGCGGAGGGTACTGGTTGCACCCGCT
TGGGCAGAACATACAGCTAAATTCGACCTTGCACTGTATGCATGGCGTGG
CCTGCCAACCGCTTACCCGTGGGTTGGTGATTCCTACTTATATGTTATTT
TGGGTGTTGGGGTGTACCCTGGTGGAACGATGACGTAGCTGGGTACCCCT
TTCCACAGACATAACACGCGCATTGCTGATTGGCCAGCGCCACCATTGAC
CCGGTTCTGGCGCCGTTAGCCCATGGGTATACCCTGCTGCGTCTTTCTTT
GTCCCAAATCATACCCTGCTGTACCCTGTTCAGACGGGAAATTGCCCCGC
AGTACGAACTCTTCTGCCCGCTGTACGGCACATCAAACCACAGCCATGGC
ACAACACCCCGACCCACGGACAAACATATGGGATACCCGAAGAAGTCGGC
GGCGCACAACACGGCGTAGCAAACCGCAACCATGGCATAAACACCCTGCG
ATGTTACACACACATATGGGATATCCCAGGTCGAGTCGGCGCACAACATA
GCCATTGCAAAACACCCCGCGTTATTTTACACACACATATGGGATATGAA
TGTAGTTTATGTGGGATGTTGCACGTCAAGTGCAATTGGCGGCCACCGGC
GCTGCTGCCGTCTTTGATGGCGCGCCCACGTTCGCGACCTCCATTTCGGC
CGCCAGTCTCGCACTCACTCGAGACGGAAACAGCTGACCAACCTCTACTG
GATTCACATTCACGGAGAGACCCAAGCTGGCACCAGCCCCGGCGGATACC
CCGCCCCATTCATGGGCATGTGTGTGCCAAGCAGCTGGTGTCAAGTGTGG
CTGTCGCGTTGATGCTGACGCGTCGGATCTTTTACGCGCGGTGTTTTGCG
ATGGCTGTGTTGTGCGTCGACTTGACCTGGGATATCCCATATGTGTGTGT
AACATCGCAGGGTGTTTATGCCATGGTTGCGGTTTGTTACGCCGTGTTGT
GCGCCGCCGACTTCTTCGGGTATCCCATATGTTTGTCCGTGGGTCGGGGT
GTTGTGCCATGGCTGTGGTTTGATGTGCCGTACAGCGGGCAGAAGAGTTC
TTACTGCGGGGAAATTTCCCGTCTGATCAGGGTACAGGTCAGGAGCAGCA
GGGTACAATTTGGGTCAAAGAAAGACGCAGTAGGGTATACCCATGGGCGA
ACGGCGCCAGAACCGGGTCAATGGTGGCGCTGGCCAATCAGCAATGCGCG
TGTAATGTCTGTGGAAAAGGGTACCCAGCTATGTCGTGGTTCCACCAGGG
TATATACCCTGTTGCGTCGTTTTCCCAATTTATTTTGTTTTTGTCTCCAA
CTCCAGTCATATATGGTACCTCTTGTGAGGGTAGACACAATAGTGGCGTT
GTAATCGAATGGTTTGTTTCTATCCTGGGCATTTGTATAGTGATGTCTCC
CCGGTTACTAATAACACCCTCAACAAGACAACAGTGTGGTTGCCATCTTG
TGTATTGGACTATATTCATGGGAGGAGGTAGGTGCTGTTTTGAATTAGCG
ATGAAGCCCCGCTCCGCTGGTACCTTTTTGTATTGTGATGAGCTCTCGTG
TTTGCCCTGGTGATAGGCGGCTCTGTGCTCCAGACGCTCTCCGAGGTGGA
AGATAAAACCGCCCGACAAAAATGCTGTTACCGGTGCAATAAACAAATAT
CCCTCCGGGTGTATTAGCCCGCACTGGTTGACGTATTTTGGAGCCCTGGG
CGTTGTAGCCTTGTACATACTGTACAAATGCATGGGCATGTAGCCCCTTT
TGGGCGTGGTAGCCCATGTATTGGACGTGCAAGGGCATGTGGCCCCTTGG
GTGTGGTAACCCCGAAATAGCCCTACGGGTGGGCGTATTAGCCCGAGGCC
TGGTAGCCTGCTCGAAGCGTAGACATGGGCGTAGTAGCCCTCGGCGTGAT
GGCCGGAATAGAACTGAATTAGCTCACTATGTACATAGACACCAAACATG
AAACACACGGACGAACACCACAGCGCTGACGTGCGTGGCCGAGAGGCATC
CCAGGAAACAAGAACCGAGGCAAGTTGGTACCTCCAGATTCAATTCCATG
ACAAACGTGGAACCCCCAAAATCGGAATCTGACAACGCTGCGGTGAGCAC
CTCTTACACCTGGCACAAGAGATGAGAGGAGGGCAACCGCACCCTTAATT
GTTGAGGCATACTTCCTCGCTCTCTGTCATCCCCACTTTTTATACATTAA
AGTATCACCTTTTGCCCATTTATTTTCCCTTCCGCCTGTGCAGCTGTCGC
AGCACCGCCTCAACGCTACGCACGCATCGACCAGCATCGACTTCCCCGAT
GGAATCCGAAATCTGCTCAAACTCAAGGTGTGTGTGGTGTGATTTTGCCG
AGGCAGGAGGCAGGGCTTATTGCAAGCAGTTGCGAGAAACTCGTCGGCCA
ATGTTACTACTGTTGCTGTTGTTGATTCTTCGCACCGGCTCGCCTGAAAC
GAAATAGCTCAATCACCCAAATCTTCACATAAGGTGACAATCTATTATGG
TCACAAGCGTAGGTTACAGTACACGTTCTGGCTATTTTGGTGGTGTCAGG
CGTGTGGAAGGAGGCATTTTTCTCTGTTGTCGTACCGGGTTTCAACAGCA
CTCTGGCCGTGTAAATAGAACGAACAAAACAGGGGGGTGCTTATACCTCA
CGTTTCCGACCACAAAAGTATTGGGTCTCTGTTGCGCTGGGAGTTATTTG
GTTGTCCTCACCGCACGCACAACAAGCGATTGATCTCTTTGGGGGTTTAC
GTTCGTGTTTTTCTGGCCGGACGCGGTTGAGCTGCAAGCGGCGCCGGAGC
TGGCCCTGAACCCCAACTCTTCGGTGCGGTGGACCCCGGAGCCCCCACCG
CAAAACTACGTACCAGTTTCATGTGTTTTAGCGCCGCACCTGTCGATGTT
TGATGCCCATGTCCAGTGGAACCCGCACCCCTTCGTTGCTTTTTACCGCC
GCCGCGCCCCCTCTCCCCTTCTTGCTAGGTCGGGGTCTCGATGACGGCGG
GGCTATACGAAGGGGCGACGTTCTACTTCATGCTCACGATTCCTCCGAGC
TACCCTTTTCACGGTGAGCGATGCCACGCCGGGTGGTGCATGGTGTACAG
CAGTATTGCTCTCTGAAGCGCTGCTCATGCGGCAGGCACGCTGCCATTAG
ATATATAGAACTATGCACACAGCAGTCCCAACAACAGGCTTGACTCGGAC
CACCACCCCTACCGGTCGCTACATACCACCACACTGCTGTTCTTGGTTTT
CTCCCTCTCGTTCCGCAGCTCCGACGGTTGCCTGCACCACTCGGGCGTGG
CACCCGAACATCGACCTCCACACCGGGCTCGTGTCTCTGCCCATCCTCAC
CAAGGACTGGCGACCGGTGCTCAGCATCAACACGGTGGTGTTCGCGCTCC
AGCTGATGTTTATCGAGCCGACGGAGCACCACCCGGTGAACGAGGGCGCC
GCTATGGTCCTCAAGACGAACCCTGCCTTATTTCGGGACCAGGTGCGCCT
TGTATGTACCACCACACTACATAACGGGCAGGCACCGCAGGAGGGGTTCC
ACCCCTACCCCTCCTGTGTGACGGGACCCCGGTTGGCTCGTCTTGTTGGG
TCGTCTAGCTAGTCGTAGTGGAAGAAGGGGGCCAGTGGGACAGACGGCGA
ATAAGCCAATAATGGGAGGAAAAAAAAAAACTGCTGATGCTGCTGCTGTT
TGTGTGTATTTATTGCGACATTGCAAGTGTGTTTCGCGGCGGCGCGGTAT
CCCATGTGTTTGTTGGCTTGCACACGAGCGAGCGCGCTTGCCGACGAGGT
TCTTGTCACTCGTTTGGGCTGTCGCCGCCGGGTGCAATGGAGTGCGCGCC
CGTCGTGGCTGCACGCGCCGGGAGTAAACTTGTAGAAGCACGTACATACG
TATTTGTCTCATTGAGGGTTGGGCGACACAGGGCCGTTTCGAAGCAGGTG
CGTGGCGTGCGTGGCCTGTTTTCGAGGTGGCGGTCTTGTGTTTATCCCTC
GGCTGGCATGCACCACTACCACCACCACCACCACCGCGCGGTCGGTCGCT
TATAGCTCAAGGCTCAGATTTGCTGTGTACACCTACATACCGTAGGTGAC
ACAAGATACCACACCCCCTGGGCCGAATTTCAGAGCTCCATTACTCCGTA
ACGAAGAAGGTGCCAGCACCGAACGATACATTTTCGGACAGCCCTCGATT
AGATCCTTCCAACGCCACCCCTTTGGGCACTGGCACTCTTCTTGCTGGGG
AGGAATCGAGCTTTGAAAATGTGTCCAGGGGGTGTGATATCTTGTGTCAC
CTACGGTGGGCATACATGCATGCCCGGCGTCGGTGCTCGTTCGTTTGCAT
TCGAAGTTCTTCCACGTCTGGGCGAAGTATACTACTGTAAGCCCCATTGC
TACCGTTACCGTGACCGCGGGCAGGAAGGACGCTCTCGTGCCCCCGTCTC
CGTCTCTCTTGACGCATGCATGGCATCATCACATGGCACACACCGACGGC
CTGGTCTTTTTTCTGTGTTTACCTTCCTCCCCTTCCGAGGCCCGCGGCGC
GCAACGCGTTCCGAACAAGAGCCAATTTATAGCACGTTTGTTGTTCCCAC
CACACCGAACCGCCGCACACGGCCTCGGTCCACCCGAGCCTTTTTTCGTT
TTTATTTTCTCGTTTCCGTCTTGTCTCTCACTTTCAAACAAGCCAGTTTC
TCACTCACAAACCAGTTCGCAAGTGTATGTACATACAGCATTCGTTTTAC
TTTTTTTATTTTAGAGATAACGCGTGCTCTCACTTCACCACTTCTCCTCA
ACAACTGACAAAACGCACGCGTTTGCCCTTTTCTTTTGCCCCACAATGCA
TGGACTCCATGGCAGGTCCTCCGCACGTTGTCTGGGGAGAGTATGTTTGG
CGTGCAGTTCGAGTCGCATCGACGGGGGGCCGGGGACGGCGGCAAGGCCG
GGGGGCCCGGGGCCGCGCAAAAACGCAAACGGGGGTGCGGGGATGGTATG
GACACGGAGGCGGTGCAAACGACGCTGGAGGCGATGCGTATACAGGTGGG
TGCGCCGGAGGTCTGGCGGTGTCCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1537:1868..8094-

>mRNA_L-elsbetiae_contig1537.3798.1 ID=mRNA_L-elsbetiae_contig1537.3798.1|Name=mRNA_L-elsbetiae_contig1537.3798.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig1537:1868..8094- (Laminarionema elsbetiae ELsaHSoW15)
GTTACCGGAGAGGGACAGGGGGCTGCGGGCTGTGACAAAGATGTACACGA
AGGCAAACCTGGCGGCCTTGAGGGTGAAGAAAGACATCGCCGAGGTTACC
GGAGAGGGACAGGGGGCTGCGGGCTGTGACAAAGATGTACACGAAGGCAA
ACCTGGCGGCCTTGAGGGTGAAGAAAGACATCGCCGAGCTGTCGCAGCAC
CGCCTCAACGCTACGCACGCATCGACCAGCATCGACTTCCCCGATGGAAT
CCGAAATCTGCTCAAACTCAAGCTGTCGCAGCACCGCCTCAACGCTACGC
ACGCATCGACCAGCATCGACTTCCCCGATGGAATCCGAAATCTGCTCAAA
CTCAAGGTCGGGGTCTCGATGACGGCGGGGCTATACGAAGGGGCGACGTT
CTACTTCATGCTCACGATTCCTCCGAGCTACCCTTTTCACGGTCGGGGTC
TCGATGACGGCGGGGCTATACGAAGGGGCGACGTTCTACTTCATGCTCAC
GATTCCTCCGAGCTACCCTTTTCACGCTCCGACGGTTGCCTGCACCACTC
GGGCGTGGCACCCGAACATCGACCTCCACACCGGGCTCGTGTCTCTGCCC
ATCCTCACCAAGGACTGGCGACCGGTGCTCAGCATCAACACGGTGGTGTT
CGCGCTCCAGCTGATGTTTATCGAGCCGACGGAGCACCACCCGGTGAACG
AGGGCGCCGCTATGGTCCTCAAGACGAACCCTGCCTTATTTCGGGACCAG
CTCCGACGGTTGCCTGCACCACTCGGGCGTGGCACCCGAACATCGACCTC
CACACCGGGCTCGTGTCTCTGCCCATCCTCACCAAGGACTGGCGACCGGT
GCTCAGCATCAACACGGTGGTGTTCGCGCTCCAGCTGATGTTTATCGAGC
CGACGGAGCACCACCCGGTGAACGAGGGCGCCGCTATGGTCCTCAAGACG
AACCCTGCCTTATTTCGGGACCAGGTCCTCCGCACGTTGTCTGGGGAGAG
TATGTTTGGCGTGCAGTTCGAGTCGCATCGACGGGGGGCCGGGGACGGCG
GCAAGGCCGGGGGGCCCGGGGCCGCGCAAAAACGCAAACGGGGGTGCGGG
GATGGTATGGACACGGAGGCGGTGCAAACGACGCTGGAGGCGATGCGTAT
ACAGGTGGGTGCGCCGGAGGTCTGGCGGTGTCCTAAGTCCTCCGCACGTT
GTCTGGGGAGAGTATGTTTGGCGTGCAGTTCGAGTCGCATCGACGGGGGG
CCGGGGACGGCGGCAAGGCCGGGGGGCCCGGGGCCGCGCAAAAACGCAAA
CGGGGGTGCGGGGATGGTATGGACACGGAGGCGGTGCAAACGACGCTGGA
GGCGATGCGTATACAGGTGGGTGCGCCGGAGGTCTGGCGGTGTCCTAA
back to top