mRNA_L-elsbetiae_contig15367.3797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15367.3797.1
Unique NamemRNA_L-elsbetiae_contig15367.3797.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: D8LCQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ2_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 6.420e-31
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            QD+VPALGDSSASLVLS  DPF+LETKPHGHGDVHHLLLREGVAEKL G GFEWLFFFQDTNALV
Sbjct:  303 QDKVPALGDSSASLVLS--DPFTLETKPHGHGDVHHLLLREGVAEKLKGGGFEWLFFFQDTNALV 365          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A836CDZ7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.500e-23
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            Q +VPALGDS ASLV  S D F+LETKPHGHGDVHHLL R G+AE L   GF++L FFQDTNALV
Sbjct:  269 QGKVPALGDSDASLVTQSGDRFALETKPHGHGDVHHLLHRSGIAEDLKSRGFKYLVFFQDTNALV 333          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7S2Y4M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4M2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.160e-21
Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGE-GFEWLFFFQDTNALV 195
            QD+VPA+GD  A LVL  DDPF +ETKPHGHGDVH LL REGVA     + G EW+FF QDTNALV
Sbjct:  211 QDKVPAVGDVQAHLVLRGDDPFQVETKPHGHGDVHILLNREGVARAWQQQSGVEWVFFLQDTNALV 276          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7S2WZI9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A7S2WZI9_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 1.300e-19
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            QD+VP L D+ A+L LSS D +S++TKPHGHGDVH LL R GV ++ +  G +W+ FFQDTNALV
Sbjct:  216 QDKVPCLADNEATLALSSSDKYSVQTKPHGHGDVHALLHRSGVVKRWAESGLKWVCFFQDTNALV 280          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A5B8MJW1_9CHLO (UTP--glucose-1-phosphate uridylyltransferase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MJW1_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 2.820e-19
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            QD+VP L D+ A+L LSS D +S++TKPHGHGDVH LL R GV ++ +  G +W+ FFQDTNALV
Sbjct:  215 QDKVPCLADNEATLALSSSDKYSVQTKPHGHGDVHALLHRSGVVKRWAESGLKWVCFFQDTNALV 279          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7R9U1R1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1R1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.840e-19
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            Q++V AL D  ASL +S DDP+ +ETKPHGHGDVHHL+L+E V ++ +    +WLFF QDTN LV
Sbjct:  255 QEKVAALSDRRASLAMSEDDPYVIETKPHGHGDVHHLMLKEKVLDQWAERSIKWLFFLQDTNLLV 319          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7S3P2S2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P2S2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.310e-19
Identity = 41/65 (63.08%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            QD+VPAL D SA L L  DD + ++TKPHGHGDVHHLLLREG+ +K   EG   + F QDTNALV
Sbjct:  283 QDKVPALRDGSAGLALEDDDRWVVQTKPHGHGDVHHLLLREGLVDKWEKEGRSHVVFLQDTNALV 347          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7S0LZF2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZF2_9CRYP)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-18
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            Q+QV  + D    L + +DDP+S+ T+PHGHGDVH LL R+G+A +L+ +G  WL+ FQDTNAL 
Sbjct:   85 QEQVAGIADFEGRLAVKADDPYSILTRPHGHGDVHSLLHRQGIARRLAEQGCRWLYVFQDTNALA 149          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7S2BNV6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNV6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            Q++VPAL DS A L +  DD +S+ TKPHGHGDVH LLL+ G+A   +  G EW FFFQDTN LV
Sbjct:  271 QEKVPALSDSQAHLAMEKDDRWSVITKPHGHGDVHQLLLQSGLARSWADSGKEWAFFFQDTNPLV 335          
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Match: A0A7S3CC09_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CC09_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 3.430e-18
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGEGFEWLFFFQDTNALV 195
            QD+VP L D+ ASL LSSDD + ++TKPHGHGDVH LL   G+ +K    G +W+ FFQDTNALV
Sbjct:  222 QDKVPCLADNRASLALSSDDRYQVQTKPHGHGDVHALLHGSGLVKKWVVHGIKWVCFFQDTNALV 286          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15367.3797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ2_ECTSI6.420e-3190.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CDZ7_9STRA2.500e-2372.31Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A7S2Y4M2_9STRA9.160e-2168.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WZI9_9CHLO1.300e-1960.00Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A5B8MJW1_9CHLO2.820e-1960.00UTP--glucose-1-phosphate uridylyltransferase n=2 T... [more]
A0A7R9U1R1_9STRA2.840e-1958.46Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3P2S2_9STRA5.310e-1963.08Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S0LZF2_9CRYP1.170e-1852.31Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2BNV6_9STRA1.350e-1860.00Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S3CC09_9CHLO3.430e-1860.00Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15367contigL-elsbetiae_contig15367:3410..3604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog2880.D8LCQ2
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K00972,ko:K12447
KEGG ReactionR00289,R00416,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014,M00361,M00362
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG4284@1,KOG2388@2759
EC2.7.7.23,2.7.7.64,2.7.7.83
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionUTP--glucose-1-phosphate uridylyltransferase family
Ec32 orthologEc-03_002030.1
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.508258-CDS-L-elsbetiae_contig15367:3409..36041622815626.508258-CDS-L-elsbetiae_contig15367:3409..3604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15367 3410..3604 -
1691682999.5848396-CDS-L-elsbetiae_contig15367:3409..36041691682999.5848396-CDS-L-elsbetiae_contig15367:3409..3604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15367 3410..3604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15367.3797.1prot_L-elsbetiae_contig15367.3797.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15367 3410..3604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15367.3797.1

>prot_L-elsbetiae_contig15367.3797.1 ID=prot_L-elsbetiae_contig15367.3797.1|Name=mRNA_L-elsbetiae_contig15367.3797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
QDQVPALGDSSASLVLSSDDPFSLETKPHGHGDVHHLLLREGVAEKLSGE
GFEWLFFFQDTNALV
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mRNA from alignment at L-elsbetiae_contig15367:3410..3604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15367.3797.1 ID=mRNA_L-elsbetiae_contig15367.3797.1|Name=mRNA_L-elsbetiae_contig15367.3797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=195bp|location=Sequence derived from alignment at L-elsbetiae_contig15367:3410..3604- (Laminarionema elsbetiae ELsaHSoW15)
CAAGACCAGGTCCCCGCCCTCGGAGACAGCTCGGCGAGCCTGGTGCTTTC CTCGGACGACCCTTTCTCGCTGGAGACGAAGCCCCACGGGCACGGCGACG TGCACCACCTCCTCCTGAGGGAAGGCGTGGCCGAGAAGCTCAGCGGGGAG GGCTTCGAGTGGCTCTTCTTCTTCCAGGACACGAACGCTTTGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15367:3410..3604-

>mRNA_L-elsbetiae_contig15367.3797.1 ID=mRNA_L-elsbetiae_contig15367.3797.1|Name=mRNA_L-elsbetiae_contig15367.3797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig15367:3410..3604- (Laminarionema elsbetiae ELsaHSoW15)
CAAGACCAGGTCCCCGCCCTCGGAGACAGCTCGGCGAGCCTGGTGCTTTC
CTCGGACGACCCTTTCTCGCTGGAGACGAAGCCCCACGGGCACGGCGACG
TGCACCACCTCCTCCTGAGGGAAGGCGTGGCCGAGAAGCTCAGCGGGGAG
GGCTTCGAGTGGCTCTTCTTCTTCCAGGACACGAACGCTTTGGTGCAAGA
CCAGGTCCCCGCCCTCGGAGACAGCTCGGCGAGCCTGGTGCTTTCCTCGG
ACGACCCTTTCTCGCTGGAGACGAAGCCCCACGGGCACGGCGACGTGCAC
CACCTCCTCCTGAGGGAAGGCGTGGCCGAGAAGCTCAGCGGGGAGGGCTT
CGAGTGGCTCTTCTTCTTCCAGGACACGAACGCTTTGGTG
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