mRNA_L-elsbetiae_contig1536.3796.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1536.3796.1
Unique NamemRNA_L-elsbetiae_contig1536.3796.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1536.3796.1 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.430e-43
Identity = 81/96 (84.38%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:  232 VPNEYEAFFNKASKLGADATRGLAPEERAQRAMEGEKLEDDIIEIATVLREKADEMVEKTGAINFEVIQPMIDEISVLKSKYKVLMGVSEEEPVDG 519
            +PNEYEAFFNKAS+LGADATR LAPEERAQRAMEGEKLED+IIEIATVLREKADEMV +TGAINFE+IQPMIDEI+VLKSKYKV+MG +E    DG
Sbjct:    1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDG 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1536.3796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKG2_ECTSI1.430e-4384.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1536contigL-elsbetiae_contig1536:21039..24436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002180.1
Exons3
Model size1288
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1536.3796.1prot_L-elsbetiae_contig1536.3796.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1536 21748..24400 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.3950274-UTR-L-elsbetiae_contig1536:21038..217471622815626.3950274-UTR-L-elsbetiae_contig1536:21038..21747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1536 21039..21747 -
1691682999.532691-UTR-L-elsbetiae_contig1536:21038..217471691682999.532691-UTR-L-elsbetiae_contig1536:21038..21747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1536 21039..21747 -
1622815626.4538705-UTR-L-elsbetiae_contig1536:24400..244361622815626.4538705-UTR-L-elsbetiae_contig1536:24400..24436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1536 24401..24436 -
1691682999.5737371-UTR-L-elsbetiae_contig1536:24400..244361691682999.5737371-UTR-L-elsbetiae_contig1536:24400..24436Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1536 24401..24436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.414105-CDS-L-elsbetiae_contig1536:21747..218471622815626.414105-CDS-L-elsbetiae_contig1536:21747..21847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1536 21748..21847 -
1691682999.5431683-CDS-L-elsbetiae_contig1536:21747..218471691682999.5431683-CDS-L-elsbetiae_contig1536:21747..21847Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1536 21748..21847 -
1622815626.4249766-CDS-L-elsbetiae_contig1536:22458..226041622815626.4249766-CDS-L-elsbetiae_contig1536:22458..22604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1536 22459..22604 -
1691682999.5531058-CDS-L-elsbetiae_contig1536:22458..226041691682999.5531058-CDS-L-elsbetiae_contig1536:22458..22604Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1536 22459..22604 -
1622815626.437839-CDS-L-elsbetiae_contig1536:24103..244001622815626.437839-CDS-L-elsbetiae_contig1536:24103..24400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1536 24104..24400 -
1691682999.5639172-CDS-L-elsbetiae_contig1536:24103..244001691682999.5639172-CDS-L-elsbetiae_contig1536:24103..24400Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1536 24104..24400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1536.3796.1

>prot_L-elsbetiae_contig1536.3796.1 ID=prot_L-elsbetiae_contig1536.3796.1|Name=mRNA_L-elsbetiae_contig1536.3796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MHLSTLIHVALLPGVVLAFSGGWNWFARSTRQHPQHTSAGVGSFRRFDHA
CSPAAAVASKQQLRLVPNEYEAFFNKASKLGADATRGLAPEERAQRAMEG
EKLEDDIIEIATVLREKADEMVEKTGAINFEVIQPMIDEISVLKSKYKVL
MGVSEEEPVDGGSNNSPAADDNEEDASSPP*
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mRNA from alignment at L-elsbetiae_contig1536:21039..24436-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1536.3796.1 ID=mRNA_L-elsbetiae_contig1536.3796.1|Name=mRNA_L-elsbetiae_contig1536.3796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3398bp|location=Sequence derived from alignment at L-elsbetiae_contig1536:21039..24436- (Laminarionema elsbetiae ELsaHSoW15)
GCCAGACTGGTCTACAGCCGACTACTCTGGCAGCCGATGCATTTATCGAC
TCTGATCCACGTCGCGCTCCTTCCTGGAGTTGTCCTCGCCTTTTCAGGAG
GATGGAACTGGTTCGCGCGCAGCACGAGACAACATCCACAGCATACGTCT
GCGGGTGTTGGTTCGTTCCGCAGGTTCGACCACGCTTGCTCGCCTGCTGC
AGCAGTAGCATCTAAGCAGCAGCTTCGGCTCGTGCCCAACGAGTACGAAG
CATTTTTCAACAAGGCTTCCAAGCTAGGGGCGGATGCTACTAGAGGCCTG
GCACCGGAGGAGCGCGCTCAGAGAGCGATGGAGGCAAGTTGAACACACAT
GTGTATCGACAAGTCTAGTCTGTACATTTCTACCTGTGAGCACTTCGCCG
CTGCTGGAGCTTCCAAGCCCTTGGAAGTTGTCCTCACTGCTGTCAACCAG
CATGGACAGTTTGTTGTTGGTCGTGAGCGGAGGGTTGAAGTGTGGACAAC
CTTTGATCATGTGTGTGATGCAGCAGAAGAAATATGCGCAGACGTCACGT
ATTTTGACCCAGCAGGCCATGGACACAAGATACCACACCCCCTGGACCTT
TTAGAGCTCTCTAACTCCGTAACGAAGAGGGTACCAGCACTAAACGATAC
ATTTTCAGACAGCCCTCGTCTACACATTTCCAACATCACCCCATTTCGGC
ACTGACACTTTTCTTGCCTGGGAGGAATCGAGCTTTGAATCTGTCCAGGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCTTCCCAT
TTATTTTGGCGACAGTCCCCCGAAGTGGAGACGTGTACTAGATACACCTT
GCGGTGTGCTTAGACACTTTGCAGTGCATTTGTCTGTACAACTAGAACCA
ACCGGGGTCACACAGGAGAGGGTGAACACTGGGGCTTTTTCTTGTTTTTT
TATTTTCTTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTCATTTT
TATCGCGAGAAGGGTTCAGCTGTCCATTTCCCTCGTCAACGTGATTACGT
CGAAGTTCACGAGCTTTTCAGCTTTAATCGGTTTCACTTGCAAAGTCGCA
ATAGAAACACTTCTGCTTGGGATTGAACTCCAGACTTTGCTGCTAGAGGG
TTCGAGGTTAAACCACTATTTAATAATAGACCAGGGGGCACCCACCTACA
AATGTGATTTCCGTGATTTCCGGCTACGCAAATAGTTCGGCAATATCGTA
CTGAACCACGCATCCACAAATCTCCACTCGACTACAACAGCAGTGCTACG
CCTCCCCCCCGTTCACTATTAACCAATGTACAGTTGCCGGCTACAGCAAG
ATAACTGTCTCAAGTGCTGCCATGTACAAGAAAGCACGGATCGTGGTGGA
TACGGGGAGGGAACGCAATTGCTGTCTGAAGTGTTGTCACGATGACAACC
CGCCGATCAATACGCGGTGAAGAAGAACAAAACCAACAAGAGCCACCAAG
CAATCGACAGTTACCAGGTCTACACATCCCAATCATCTGTGGTTCATATG
TAGGTGCAGTACAACAACGACACCGATTCGTTTTGTTCCACATTGAAGGG
TTCTTCCACGAGCGGGTACACCAATTGGGTGCGGTGCCGTGCCACCTACG
GTATATCATTTCTTGCTGCGTCTCCCCGGGAACTGCTGTCGTGAGTATCG
TGTGCGCGAGACAAAAAAATCCAGTGTGATACATGGTCGCATCCGAGAGG
GGTTCAAAGCCTCGGTAGCACCTTCTGCCGCTGTCGGAGGTGTTCTAAAC
CCTCGATCTTGGTTGACCGGTGTGTGCTGCAGGGGGAGAAGCTGGAAGAC
GACATCATCGAAATCGCGACGGTGTTGCGAGAGAAGGCGGACGAGATGGT
GGAGAAAACGGGCGCGATCAACTTCGAAGTTATCCAGCCAATGATCGATG
AGATTTCCGTCCTCAAAAGCAAGTACAAGTGAGTGGTGAACGGCCAGCCC
GCAAGAAAAAATTGCGCAAATCGGTGCTCCACTGCTACTTTAGTGGACAG
ATTTGGTTGGAATGGACTAGTCTACACATGTATGTTCCTACTCTAACTAC
ATAGATACATGATGGTCAGGTCAGGGTGCGATCGCTGCGTCGAATTAAAA
CTACGTACCTATAGGTACCCTTTTCTTCCCAGGTACCCTTTTCTTCGCAG
GCGTGAAATATATATTTGTGCATGTCGGTGTGCACAGATCACGGAGCTTC
CCGTACTTGTAGCCTGCAATGCCAAACAGATGCCCCCCCCGTACCCCCCC
CCCCCCAAATCACGACCATACGTACACACGCCATGTGAGAAACCGCATCC
ATACAAGAAACGGTATATATGTATGTCTTGCCGGTGTCGACTATTCTGCG
TGACACTGTGGATGGGGGTGGTGTTTTGGTGGCTCTAGTTGTTCGGGCAA
TCTCCCTGGATGTGTACATGTGGCATCTGTGGTAAAGGTCATGCTGCACT
GGTCGCTTGACCCCCGCTGCTCCGCTTCACCCTTCACGTCCTAGTCTATG
CCTGTTTTCTCGTGTACGATGTCACCGTAAATTGCGCAGGGTGCTGATGG
GTGTAAGCGAGGAGGAGCCCGTTGACGGCGGGAGCAATAACAGCCCAGCT
GCAGATGACAACGAGGAGGATGCAAGCTCTCCTCCCTAGGCTAAAGTCAG
ATATACGGTTGTTTCGTGCCCCGTTCGCTGGCAGCGGGGGCTGCTCATGT
CCAGCGAATTGAAGTGATTTTGCATTGCAATCGGAGGCAGACGCAGCCCT
GTTGCACAAGTCGCACAGCGATGTAGTGGTTTGCTCGCCGGGAGCTTTCT
CGGGGGAGGGGGTGTCGTAAGATTTAGCTCGCACGTTAAATCCGGCAACA
AACTACACAACCCCGTGGCCCATTTGGACAAAAATGTTTTCGTTCGGTTT
CGTTTTTCGATGTTCATGTTTGGGAGGTGTACCTAGAAGTATTAGGGCCG
CTGGTGTGAGATGAAAACATTTGTCAAGTGGGCGACTCTTTTGATTTTTT
GAAAGTAAAGGTTGGTAGAGAAGATGGTCCCAGCAAAACTGCTGGAGCAA
TAGTGGGCTCTCTACTTGTATCTACTCTCTCCCATGAGCGATTTCGCAGC
CTTAATTGGGCACAGGTATGGAAGAGTGTTTGTGGGTGCTGGGGAGGTAC
AGGTGCCGGCTTGCTATTCCGAGTTCCACACAGAATAATTGACTGAAAAA
TACATATGTCGGGCGGGTGGGTGGTGTCTCAGAAGATACTCTGTTTTCCT
CTGTTTTCCTGTCTCGGACAGGGTAGGGAAAAAGGAATGAGAGGCTCAAC
TGCCCTCTCCTGTATTCTGATTCTTTATTGCATGAGGGAGATGGAAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1536:21039..24436-

>mRNA_L-elsbetiae_contig1536.3796.1 ID=mRNA_L-elsbetiae_contig1536.3796.1|Name=mRNA_L-elsbetiae_contig1536.3796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1536:21039..24436- (Laminarionema elsbetiae ELsaHSoW15)
ATGCATTTATCGACTCTGATCCACGTCGCGCTCCTTCCTGGAGTTGTCCT
CGCCTTTTCAGGAGGATGGAACTGGTTCGCGCGCAGCACGAGACAACATC
CACAGCATACGTCTGCGGGTGTTGGTTCGTTCCGCAGGTTCGACCACGCT
TGCTCGCCTGCTGCAGCAGTAGCATCTAAGCAGCAGCTTCGGCTCGTGCC
CAACGAGTACGAAGCATTTTTCAACAAGGCTTCCAAGCTAGGGGCGGATG
CTACTAGAGGCCTGGCACCGGAGGAGCGCGCTCAGAGAGCGATGGAGATG
CATTTATCGACTCTGATCCACGTCGCGCTCCTTCCTGGAGTTGTCCTCGC
CTTTTCAGGAGGATGGAACTGGTTCGCGCGCAGCACGAGACAACATCCAC
AGCATACGTCTGCGGGTGTTGGTTCGTTCCGCAGGTTCGACCACGCTTGC
TCGCCTGCTGCAGCAGTAGCATCTAAGCAGCAGCTTCGGCTCGTGCCCAA
CGAGTACGAAGCATTTTTCAACAAGGCTTCCAAGCTAGGGGCGGATGCTA
CTAGAGGCCTGGCACCGGAGGAGCGCGCTCAGAGAGCGATGGAGGGGGAG
AAGCTGGAAGACGACATCATCGAAATCGCGACGGTGTTGCGAGAGAAGGC
GGACGAGATGGTGGAGAAAACGGGCGCGATCAACTTCGAAGTTATCCAGC
CAATGATCGATGAGATTTCCGTCCTCAAAAGCAAGTACAAGGGGAGAAGC
TGGAAGACGACATCATCGAAATCGCGACGGTGTTGCGAGAGAAGGCGGAC
GAGATGGTGGAGAAAACGGGCGCGATCAACTTCGAAGTTATCCAGCCAAT
GATCGATGAGATTTCCGTCCTCAAAAGCAAGTACAAGGTGCTGATGGGTG
TAAGCGAGGAGGAGCCCGTTGACGGCGGGAGCAATAACAGCCCAGCTGCA
GATGACAACGAGGAGGATGCAAGCTCTCCTCCCTAGGGTGCTGATGGGTG
TAAGCGAGGAGGAGCCCGTTGACGGCGGGAGCAATAACAGCCCAGCTGCA
GATGACAACGAGGAGGATGCAAGCTCTCCTCCCTAG
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