mRNA_L-elsbetiae_contig15350.3793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15350.3793.1
Unique NamemRNA_L-elsbetiae_contig15350.3793.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15350.3793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15350contigL-elsbetiae_contig15350:3597..4195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15350.3793.1prot_L-elsbetiae_contig15350.3793.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15350 3795..4130 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.7830634-UTR-L-elsbetiae_contig15350:3596..37941622815625.7830634-UTR-L-elsbetiae_contig15350:3596..3794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15350 3597..3794 +
1691682999.0583305-UTR-L-elsbetiae_contig15350:3596..37941691682999.0583305-UTR-L-elsbetiae_contig15350:3596..3794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15350 3597..3794 +
1622815625.813466-UTR-L-elsbetiae_contig15350:4130..41951622815625.813466-UTR-L-elsbetiae_contig15350:4130..4195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15350 4131..4195 +
1691682999.0806997-UTR-L-elsbetiae_contig15350:4130..41951691682999.0806997-UTR-L-elsbetiae_contig15350:4130..4195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15350 4131..4195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.7957869-CDS-L-elsbetiae_contig15350:3794..41301622815625.7957869-CDS-L-elsbetiae_contig15350:3794..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15350 3795..4130 +
1691682999.0696511-CDS-L-elsbetiae_contig15350:3794..41301691682999.0696511-CDS-L-elsbetiae_contig15350:3794..4130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15350 3795..4130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15350.3793.1

>prot_L-elsbetiae_contig15350.3793.1 ID=prot_L-elsbetiae_contig15350.3793.1|Name=mRNA_L-elsbetiae_contig15350.3793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MPRRWPYYADGPVMKITVKEKKSTRRKHVLLLQPHTVSWRRTPDGVRTHL
WGRSLHFYRVLSAQTNLDDRQKSKTECHRTERVCHTAFQFSNWLLSSAFE
NLTIDYRDFFP*
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mRNA from alignment at L-elsbetiae_contig15350:3597..4195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15350.3793.1 ID=mRNA_L-elsbetiae_contig15350.3793.1|Name=mRNA_L-elsbetiae_contig15350.3793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=599bp|location=Sequence derived from alignment at L-elsbetiae_contig15350:3597..4195+ (Laminarionema elsbetiae ELsaHSoW15)
TCTGGCGATGCGTGAGTATACACAACAGCCCCCCTGCTCTCGACATTGTC
AAGCAAGATGTAATCCGGACATTTTGTATTCTCATACAATACCCTGCTGA
ATAGATTACTCTGCTTGGGCATCGCGCGTACCAATTTTCTTTCCACTTTA
GAGACTCTCTCTCTGTATGATGATAAACTTGGATGGCAGGCGTATTACAT
GCCACGCAGATGGCCCTACTACGCAGATGGCCCTGTAATGAAAATAACAG
TGAAAGAAAAAAAGAGCACGCGACGCAAACATGTACTACTACTACAGCCG
CACACAGTTAGTTGGCGGCGCACTCCCGACGGTGTGCGGACACACCTCTG
GGGACGCTCGTTGCACTTCTATCGTGTGTTGAGTGCGCAAACAAACTTGG
ACGACAGGCAGAAAAGCAAAACAGAGTGCCATCGAACGGAAAGGGTATGC
CACACAGCATTCCAATTTTCAAATTGGTTGTTGTCTAGCGCCTTTGAAAA
TCTGACTATCGATTACCGTGACTTTTTTCCGTGACTTTTTCCCGTCATTT
CCGTGTATTTTTGCGGTTTTGTGCGAAAACGTGACCCCTTTTGTCCATA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15350:3597..4195+

>mRNA_L-elsbetiae_contig15350.3793.1 ID=mRNA_L-elsbetiae_contig15350.3793.1|Name=mRNA_L-elsbetiae_contig15350.3793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig15350:3597..4195+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCACGCAGATGGCCCTACTACGCAGATGGCCCTGTAATGAAAATAAC
AGTGAAAGAAAAAAAGAGCACGCGACGCAAACATGTACTACTACTACAGC
CGCACACAGTTAGTTGGCGGCGCACTCCCGACGGTGTGCGGACACACCTC
TGGGGACGCTCGTTGCACTTCTATCGTGTGTTGAGTGCGCAAACAAACTT
GGACGACAGGCAGAAAAGCAAAACAGAGTGCCATCGAACGGAAAGGGTAT
GCCACACAGCATTCCAATTTTCAAATTGGTTGTTGTCTAGCGCCTTTGAA
AATCTGACTATCGATTACCGTGACTTTTTTCCGTGAATGCCACGCAGATG
GCCCTACTACGCAGATGGCCCTGTAATGAAAATAACAGTGAAAGAAAAAA
AGAGCACGCGACGCAAACATGTACTACTACTACAGCCGCACACAGTTAGT
TGGCGGCGCACTCCCGACGGTGTGCGGACACACCTCTGGGGACGCTCGTT
GCACTTCTATCGTGTGTTGAGTGCGCAAACAAACTTGGACGACAGGCAGA
AAAGCAAAACAGAGTGCCATCGAACGGAAAGGGTATGCCACACAGCATTC
CAATTTTCAAATTGGTTGTTGTCTAGCGCCTTTGAAAATCTGACTATCGA
TTACCGTGACTTTTTTCCGTGA
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