mRNA_L-elsbetiae_contig1535.3791.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1535.3791.1
Unique NamemRNA_L-elsbetiae_contig1535.3791.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1535.3791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1535contigL-elsbetiae_contig1535:22186..23780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1226
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1535.3791.1prot_L-elsbetiae_contig1535.3791.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1535 22927..23697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.4713035-UTR-L-elsbetiae_contig1535:22185..225201622815625.4713035-UTR-L-elsbetiae_contig1535:22185..22520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1535 22186..22520 -
1691682998.8324347-UTR-L-elsbetiae_contig1535:22185..225201691682998.8324347-UTR-L-elsbetiae_contig1535:22185..22520Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1535 22186..22520 -
1622815625.4853783-UTR-L-elsbetiae_contig1535:22889..229261622815625.4853783-UTR-L-elsbetiae_contig1535:22889..22926Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1535 22890..22926 -
1691682998.8423345-UTR-L-elsbetiae_contig1535:22889..229261691682998.8423345-UTR-L-elsbetiae_contig1535:22889..22926Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1535 22890..22926 -
1622815625.5123646-UTR-L-elsbetiae_contig1535:23697..237801622815625.5123646-UTR-L-elsbetiae_contig1535:23697..23780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1535 23698..23780 -
1691682998.86141-UTR-L-elsbetiae_contig1535:23697..237801691682998.86141-UTR-L-elsbetiae_contig1535:23697..23780Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1535 23698..23780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.5019758-CDS-L-elsbetiae_contig1535:22926..236971622815625.5019758-CDS-L-elsbetiae_contig1535:22926..23697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1535 22927..23697 -
1691682998.8515835-CDS-L-elsbetiae_contig1535:22926..236971691682998.8515835-CDS-L-elsbetiae_contig1535:22926..23697Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1535 22927..23697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1535.3791.1

>prot_L-elsbetiae_contig1535.3791.1 ID=prot_L-elsbetiae_contig1535.3791.1|Name=mRNA_L-elsbetiae_contig1535.3791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MVNLYAKRCSYQNCTTQPSYGVAGTKVKEFCRQHAQEGMVTIFSNVCSHQ
GCLKESHYGVEGERPALCSKHQKSGMVRSSKKMTCGHQGCETWPSFGVPG
GRPAFCSQHAETGMVNLRSKTCRREGCTTLASFGIPGTKSKKMFCAQHAT
EGTVHLYIHSCSHPSCTKVASYGMAGTKILEFCSPHAKDGMINLRTNKRS
SQAGSAYGNKSGRPKKRPRHPGDLPSVPAPVKQETSEAASPANSSSSEPP
NGVVTS*
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mRNA from alignment at L-elsbetiae_contig1535:22186..23780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1535.3791.1 ID=mRNA_L-elsbetiae_contig1535.3791.1|Name=mRNA_L-elsbetiae_contig1535.3791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1595bp|location=Sequence derived from alignment at L-elsbetiae_contig1535:22186..23780- (Laminarionema elsbetiae ELsaHSoW15)
AAGAAGGTTGCAGCACATCGCCGAGCTATGGAGTGGCCGGCTCCAAGTCG
CTTGACTTCTGCCGAATTCACGCGAAGGAGGGCATGGTGAACCTCTATGC
CAAGCGGTGCAGCTACCAGAACTGTACCACACAACCGAGCTATGGAGTGG
CCGGTACCAAAGTTAAGGAGTTTTGCCGACAGCACGCCCAGGAGGGGATG
GTTACAATATTCTCCAATGTTTGTAGCCACCAAGGCTGCTTAAAAGAGTC
GCACTACGGCGTGGAAGGAGAACGGCCAGCGCTCTGCTCGAAGCATCAAA
AATCGGGAATGGTCCGCAGCAGCAAGAAGATGACATGCGGCCACCAAGGC
TGCGAAACATGGCCGAGCTTCGGCGTGCCAGGAGGACGGCCGGCGTTCTG
CTCGCAGCATGCAGAAACGGGAATGGTCAACCTCCGTAGCAAAACATGCC
GCCGAGAAGGATGCACTACGCTGGCGAGCTTTGGCATCCCGGGCACCAAA
TCGAAGAAAATGTTTTGTGCGCAACACGCCACGGAAGGAACGGTACATCT
CTACATTCACAGTTGTAGCCACCCAAGTTGCACCAAAGTCGCGTCGTACG
GGATGGCAGGCACAAAAATCTTGGAGTTTTGCTCTCCGCACGCGAAGGAC
GGCATGATCAACCTTAGAACCAACAAGCGCAGCAGTCAGGCTGGGAGCGC
TTATGGCAACAAAAGCGGGAGGCCGAAAAAGCGCCCTCGGCACCCCGGCG
ACCTTCCGTCGGTGCCGGCCCCGGTAAAGCAAGAGACGAGCGAAGCCGCT
TCGCCGGCGAATAGTAGTTCGTCGGAGCCGCCTAATGGAGTTGTGACATC
ATAAATGAGGCTTTGTTAAACCAAGCAAGAGGCAATAATAGGTGAGAGAG
GCAAAGCATGTTTTTGTTAATTCTGCCCCCTGTGTGTATCCTTATAGGTC
GCCTCTTCTAACATATGGTTGGAAGCCTTTACCGATGCGTCTGGAGTGAA
ACTGCTGTCGCCCACAACACCGTGAACCTGCATCTTTCCCCCGACGCAAT
CTCATCAACCCTGGCCTATGGTGCACCTGGCGTTTGGTAGAGCAACCACT
GAATGAAGTAAACTTGTAGTATCGGGCGGGGGTGTCGTGGTGTTGATTTT
GATATAATGAGCACACGTGCCTTTTTGCTTCATCGAGCTCGCTTGTTCGT
GGAAACGTTGGAGTACAATCTTGCGACCGTTCGTTGCCACATGTGTTCGT
GCACCGTTAGGTGGACCCTTCAACGAAAAAGGAAAAGGGGGCGAGGCAGG
AGCTCCGAAGGAAGCAAGACCACACGCAGTTCCGTGCAAACACGAGAGTG
CTTGCTGCCAGCATGCATGAGTGCGGTACCTTGCGCCTTGAGCACGCACG
GCTACCCATGTATAGCCAAGAGTAGTGGAATCGCGATTTACTACTATATG
TATGTTGTAGTTGCGGAGAGAGCCAGTTACTGCGTAGCAACGGTTTTGCC
CGATATCAACTGAGCGTTGTTCTTTTTTTCGAGATGGGAAAAACGTGTGG
ATGCAAGTGGTGATGGTGTTGGTTTTCGCTGCGAGTGGTGATGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1535:22186..23780-

>mRNA_L-elsbetiae_contig1535.3791.1 ID=mRNA_L-elsbetiae_contig1535.3791.1|Name=mRNA_L-elsbetiae_contig1535.3791.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig1535:22186..23780- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACCTCTATGCCAAGCGGTGCAGCTACCAGAACTGTACCACACA
ACCGAGCTATGGAGTGGCCGGTACCAAAGTTAAGGAGTTTTGCCGACAGC
ACGCCCAGGAGGGGATGGTTACAATATTCTCCAATGTTTGTAGCCACCAA
GGCTGCTTAAAAGAGTCGCACTACGGCGTGGAAGGAGAACGGCCAGCGCT
CTGCTCGAAGCATCAAAAATCGGGAATGGTCCGCAGCAGCAAGAAGATGA
CATGCGGCCACCAAGGCTGCGAAACATGGCCGAGCTTCGGCGTGCCAGGA
GGACGGCCGGCGTTCTGCTCGCAGCATGCAGAAACGGGAATGGTCAACCT
CCGTAGCAAAACATGCCGCCGAGAAGGATGCACTACGCTGGCGAGCTTTG
GCATCCCGGGCACCAAATCGAAGAAAATGTTTTGTGCGCAACACGCCACG
GAAGGAACGGTACATCTCTACATTCACAGTTGTAGCCACCCAAGTTGCAC
CAAAGTCGCGTCGTACGGGATGGCAGGCACAAAAATCTTGGAGTTTTGCT
CTCCGCACGCGAAGGACGGCATGATCAACCTTAGAACCAACAAGCGCAGC
AGTCAGGCTGGGAGCGCTTATGGCAACAAAAGCGGGAGGCCGAAAAAGCG
CCCTCGGCACCCCGGCGACCTTCCGTCGGTGCCGGCCCCGGTAAAGCAAG
AGACGAGCGAAGCCGCTTCGCCGGCGAATAGTAGTTCGTCGGAGCCGCCT
AATGGAGTTGTGACATCATAAATGGTGAACCTCTATGCCAAGCGGTGCAG
CTACCAGAACTGTACCACACAACCGAGCTATGGAGTGGCCGGTACCAAAG
TTAAGGAGTTTTGCCGACAGCACGCCCAGGAGGGGATGGTTACAATATTC
TCCAATGTTTGTAGCCACCAAGGCTGCTTAAAAGAGTCGCACTACGGCGT
GGAAGGAGAACGGCCAGCGCTCTGCTCGAAGCATCAAAAATCGGGAATGG
TCCGCAGCAGCAAGAAGATGACATGCGGCCACCAAGGCTGCGAAACATGG
CCGAGCTTCGGCGTGCCAGGAGGACGGCCGGCGTTCTGCTCGCAGCATGC
AGAAACGGGAATGGTCAACCTCCGTAGCAAAACATGCCGCCGAGAAGGAT
GCACTACGCTGGCGAGCTTTGGCATCCCGGGCACCAAATCGAAGAAAATG
TTTTGTGCGCAACACGCCACGGAAGGAACGGTACATCTCTACATTCACAG
TTGTAGCCACCCAAGTTGCACCAAAGTCGCGTCGTACGGGATGGCAGGCA
CAAAAATCTTGGAGTTTTGCTCTCCGCACGCGAAGGACGGCATGATCAAC
CTTAGAACCAACAAGCGCAGCAGTCAGGCTGGGAGCGCTTATGGCAACAA
AAGCGGGAGGCCGAAAAAGCGCCCTCGGCACCCCGGCGACCTTCCGTCGG
TGCCGGCCCCGGTAAAGCAAGAGACGAGCGAAGCCGCTTCGCCGGCGAAT
AGTAGTTCGTCGGAGCCGCCTAATGGAGTTGTGACATCATAA
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