mRNA_L-elsbetiae_contig15349.3787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15349.3787.1
Unique NamemRNA_L-elsbetiae_contig15349.3787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A6H5K3X3_9PHAE (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3X3_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 1.460e-116
Identity = 175/211 (82.94%), Postives = 191/211 (90.52%), Query Frame = 1
Query:    1 RENRFHVPAAGARMQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQSGGRNFYPDKNGHYELFQDDQLTVRAAPLKHGVPCVGFAVEETNRPGR 633
            RE+RF V  AGA MQL FLGTASCIPS SRGVSCTVLRN GDLWLFDVGEGTQ+QIQKS+LKPTRITKIFITHAHGDH+FGLPG+LCLMGTNFDRAD RRVEIYGPTGLRAYLRAA+++ Y++AV PYVVHEL DVPYLHGD   EPEP HVN+ARD  YGEQ GGRNF+PDKNGHYELFQDD+LTVRAAP+KHGVPCVG+ VEE +RPGR
Sbjct:  696 RESRFGVLPAGAPMQLTFLGTASCIPSTSRGVSCTVLRNEGDLWLFDVGEGTQIQIQKSSLKPTRITKIFITHAHGDHSFGLPGLLCLMGTNFDRADGRRVEIYGPTGLRAYLRAAVQFTYSKAVVPYVVHELTDVPYLHGDHFSEPEPIHVNIARDVRYGEQHGGRNFFPDKNGHYELFQDDKLTVRAAPMKHGVPCVGYTVEEADRPGR 906          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A836CJH3_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJH3_9STRA)

HSP 1 Score: 224 bits (571), Expect = 1.040e-65
Identity = 107/199 (53.77%), Postives = 145/199 (72.86%), Query Frame = 1
Query:   40 MQLAFLGTASCIPSA-SRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQSGGRNFYPDKNGHYELFQDDQ-LTVRAAPLKHGVPCVGFAVEETNRPG 630
            ++L  LG+ASC+PS  SRGVSCT LR  G++WLFD GEGTQ+QIQ+S L+PTRI+KIFITH HGDH  G+PG++CLMG + +R  +  +E+YGP GLR Y+RA ++ +Y+R   PYVVHEL  VP+LHGDF   P P+ +++ RDS YGE  GGR+ +P+  G +E+  D    +V A  +KH VPCVG+ V E ++ G
Sbjct:   99 LELVILGSASCVPSVTSRGVSCTALRLGGEVWLFDAGEGTQIQIQRSQLRPTRISKIFITHLHGDHLNGVPGLMCLMGQDKERDRNAPLELYGPPGLRMYIRAVMRCSYSRITPPYVVHELHGVPHLHGDFVHPPPPYQIHLDRDSLYGEVDGGRDIWPNDQGLWEVCTDAAGRSVVAGSMKHTVPCVGYVVTEPDKDG 297          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A7S0DS69_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DS69_9EUKA)

HSP 1 Score: 215 bits (548), Expect = 6.240e-62
Identity = 110/206 (53.40%), Postives = 148/206 (71.84%), Query Frame = 1
Query:   43 QLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKS-NLKPTRITKIFITHAHGDHTFGLPGMLCLMG--TNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEP-EPFHVNMA---RDSNYGEQSGGRNFYPDKNGHYELFQDDQ---LTVRAAPLKHGVPCVGFAVEETNRPG 630
            +L FLGTASCIPSASR VSCT ++  G++W+FD GEG+Q+Q+QKS +++ ++ITKIFITH HGDH FGL G+LCLMG  T+ ++  ++ VEI+GP GLRAYLR A++  Y+R V P+VVHEL D+PYLHG  + +   PF  NM    R   YGE  GG+N YPD +G + L  + +   L+V+A  L+H VP VGFA+ E + PG
Sbjct:  141 ELEFLGTASCIPSASRCVSCTAVKKGGEVWIFDAGEGSQIQVQKSQHIRTSKITKIFITHLHGDHCFGLAGILCLMGAQTDDEKKKNQLVEIFGPKGLRAYLRTALRLTYSRVVPPHVVHELHDIPYLHGPEDTQGLPPFAQNMEGLPRHQRYGENIGGKNIYPDSDGVWTLIDNHRETGLSVKATALRHTVPTVGFALSERDHPG 346          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: F0XZ84_AURAN (Lactamase_B domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZ84_AURAN)

HSP 1 Score: 205 bits (521), Expect = 8.150e-61
Identity = 104/208 (50.00%), Postives = 138/208 (66.35%), Query Frame = 1
Query:   40 MQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNL-KPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGD-FNKEPEPFHVNMAR---------DSNYGEQSGGRNFYPDKNGHYELFQDDQLTVRAAPLKHGVPCVGFAVEETNRPG 630
            M++ FLGTASC+PS +RGVSCT LR  G  WLFD GEG+Q+Q+Q+S+L  P ++  IF+TH HGDH+FGLPG++CL+G N  + D+  VE++GP GLR YLRA++K  +AR   PYVVHEL  VP L    F   P PF  +  +         D N+GEQ GGR+  PD +G + L     L VRAAP++H VPCVG+   E ++ G
Sbjct:    1 MEVTFLGTASCVPSITRGVSCTSLRYDGTTWLFDAGEGSQIQVQRSHLVHPGKVDAIFVTHLHGDHSFGLPGLMCLIGQNRVKGDAP-VEVFGPQGLRLYLRASLKLTHARVAAPYVVHELVGVPLLAPPGFRPPPPPFKQSETQLERNFLADPDKNFGEQRGGRDIRPDADGAWTLAPRGALAVRAAPMRHTVPCVGYVCVEPDKAG 207          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A482SL08_9ARCH (Ribonuclease Z n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL08_9ARCH)

HSP 1 Score: 206 bits (524), Expect = 9.780e-59
Identity = 109/223 (48.88%), Postives = 148/223 (66.37%), Query Frame = 1
Query:    1 RENRFHVPAAGARMQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTN---------FDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMAR-DSNYGEQSGGRNFYPDKNGHYELFQDD---QLTVRAAPLKHGVPCVGFAVEETNRPG 630
            R+NR  V   G  M+L FLGTASC+PS SRGVS   LR  GD+W+FD GEGTQVQIQ S L+P RI KIFI+H HGDH FGLPG+LCL+G +         +D A+   ++IYGP G+R Y+RA+++ +Y+R   PY VHEL DVP L+   ++   P   + AR D  +GE+ G R+ YP+  G Y++  ++   ++TV+AAPL H +PCVG+ + E  R G
Sbjct:  201 RDNRLPVLETG-EMELYFLGTASCVPSVSRGVSSLTLRYKGDVWMFDCGEGTQVQIQSSKLRPNRINKIFISHLHGDHLFGLPGLLCLLGKSKLALKESQEYDCAELPPIDIYGPEGIRDYIRASMQLSYSRITVPYRVHELKDVPLLNIKTSRLMPPSFQSSARMDPQFGERRG-RDIYPNSKGVYDVVTEEDGVEMTVQAAPLTHSIPCVGYVITEKVRKG 421          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A7S0JED0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JED0_9EUKA)

HSP 1 Score: 199 bits (505), Expect = 1.630e-58
Identity = 98/211 (46.45%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   31 GARMQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQSGGRNFYPDKNGHYELFQD----------DQLTVRAAPLKHGVPCVGFAVEETNRPGR 633
            GA ++L  LG+ SC PS  RG +C  LR     WLFDVGEG+QVQ+Q+ ++KP+RI +IF+THAHGDH FGLPG+LCL+    +      +++YGP GLR +LR A++++  R V  Y+VHEL D+PYLH +      P    +AR S YGEQ GGR+  PD +G + LF +           +++VRAAP+ H    VG+AV E ++PGR
Sbjct:   53 GADLELTVLGSGSCYPSPWRGAACLALRVLSSYWLFDVGEGSQVQLQRCSVKPSRIDRIFVTHAHGDHCFGLPGLLCLIARGREEEQLPPLQVYGPQGLRTFLRVALRFSGTRLVPKYIVHELVDIPYLHHNKALPELPASPPVARHSAYGEQPGGRSISPDADGTWTLFDEAFGDSGRGGEGRISVRAAPVVHTARTVGYAVTEADKPGR 263          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A7R9UIQ3_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UIQ3_DIALT)

HSP 1 Score: 199 bits (505), Expect = 1.920e-58
Identity = 97/209 (46.41%), Postives = 140/209 (66.99%), Query Frame = 1
Query:   31 GARMQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQSGGRNFYPDK----NG----HYELFQDDQLTVRAAPLKHGVPCVGFAVEETNRPGR 633
            G  M+L FLGT SC+P+  RGV+CTV+R  G  W+FD GEGTQ+Q+Q+S ++P  I +IF+TH HGDH +GLPG+LCL+G N    +   VE+YGP GLR ++R A+  + ARA+  Y VHEL  +P+LH DF++EP P  V     + +  +  G + +P+K    +G     + L  + ++ VRAAP++H VPCVG+ V E++RPGR
Sbjct:   21 GTDMELFFLGTGSCLPTVVRGVACTVVRMDGSFWMFDAGEGTQIQLQRSIVRPGAIDRIFVTHLHGDHAYGLPGVLCLIG-NARSPNDPPVELYGPAGLRLFVRTALAISRARAIPHYRVHELHQIPFLHADFSREPTPVRVTCPPHAPH--EQPGDDIFPEKVTLADGSEALQWRLIDEPEVAVRAAPVQHTVPCVGYVVRESDRPGR 226          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A7S0JEC0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JEC0_9EUKA)

HSP 1 Score: 199 bits (505), Expect = 5.960e-57
Identity = 98/211 (46.45%), Postives = 136/211 (64.45%), Query Frame = 1
Query:   31 GARMQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQSGGRNFYPDKNGHYELFQD----------DQLTVRAAPLKHGVPCVGFAVEETNRPGR 633
            GA ++L  LG+ SC PS  RG +C  LR     WLFDVGEG+QVQ+Q+ ++KP+RI +IF+THAHGDH FGLPG+LCL+    +      +++YGP GLR +LR A++++  R V  Y+VHEL D+PYLH +      P    +AR S YGEQ GGR+  PD +G + LF +           +++VRAAP+ H    VG+AV E ++PGR
Sbjct:   53 GADLELTVLGSGSCYPSPWRGAACLALRVLSSYWLFDVGEGSQVQLQRCSVKPSRIDRIFVTHAHGDHCFGLPGLLCLIARGREEEQLPPLQVYGPQGLRTFLRVALRFSGTRLVPKYIVHELVDIPYLHHNKALPELPASPPVARHSAYGEQPGGRSISPDADGTWTLFDEAFGDSGRGGEGRISVRAAPVVHTARTVGYAVTEADKPGR 263          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A7S2BLW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLW7_9STRA)

HSP 1 Score: 190 bits (483), Expect = 6.090e-57
Identity = 91/172 (52.91%), Postives = 126/172 (73.26%), Query Frame = 1
Query:   40 MQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPF-HVNMARDSNYGEQSGGRNFYPDKNGHYELFQDDQ 552
            + + F+GTASC+P  +RGVSCT LR +G++WLFD GEGTQ+ IQ+S ++P RITKIF+THAHGDHTFGL G+LCLMG ++DR     VEI+G  G RAYLRA+ +Y  +R + P+ VHEL DVP+LH  F+  P P   + +  DS YGE +GGR+ +P++ G +E   +++
Sbjct:   38 IDITFIGTASCVPGLTRGVSCTALRRSGEVWLFDAGEGTQISIQRSTVRPGRITKIFLTHAHGDHTFGLMGILCLMGQDWDRT-GEPVEIFGLQGTRAYLRASARYTISRVLPPHRVHELHDVPHLHR-FSSNPSPIPDITIEMDSKYGEVAGGRDIFPNEEGVWECVTEEE 207          
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Match: A0A8J5XSG8_DIALT (Lactamase_B domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSG8_DIALT)

HSP 1 Score: 199 bits (505), Expect = 7.560e-56
Identity = 97/209 (46.41%), Postives = 140/209 (66.99%), Query Frame = 1
Query:   31 GARMQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKPTRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYLRAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQSGGRNFYPDK----NG----HYELFQDDQLTVRAAPLKHGVPCVGFAVEETNRPGR 633
            G  M+L FLGT SC+P+  RGV+CTV+R  G  W+FD GEGTQ+Q+Q+S ++P  I +IF+TH HGDH +GLPG+LCL+G N    +   VE+YGP GLR ++R A+  + ARA+  Y VHEL  +P+LH DF++EP P  V     + +  +  G + +P+K    +G     + L  + ++ VRAAP++H VPCVG+ V E++RPGR
Sbjct:  167 GTDMELFFLGTGSCLPTVVRGVACTVVRMDGSFWMFDAGEGTQIQLQRSIVRPGAIDRIFVTHLHGDHAYGLPGVLCLIG-NARSPNDPPVELYGPAGLRLFVRTALAISRARAIPHYRVHELHQIPFLHADFSREPTPVRVTCPPHAPH--EQPGDDIFPEKVTLADGSEALQWRLIDEPEVAVRAAPVQHTVPCVGYVVRESDRPGR 372          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15349.3787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X3_9PHAE1.460e-11682.94Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A836CJH3_9STRA1.040e-6553.77Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
A0A7S0DS69_9EUKA6.240e-6253.40Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
F0XZ84_AURAN8.150e-6150.00Lactamase_B domain-containing protein (Fragment) n... [more]
A0A482SL08_9ARCH9.780e-5948.88Ribonuclease Z n=1 Tax=archaeon TaxID=1906665 RepI... [more]
A0A7S0JED0_9EUKA1.630e-5846.45Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7R9UIQ3_DIALT1.920e-5846.41Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]
A0A7S0JEC0_9EUKA5.960e-5746.45Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S2BLW7_9STRA6.090e-5752.91Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J5XSG8_DIALT7.560e-5646.41Lactamase_B domain-containing protein n=1 Tax=Diac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15349contigL-elsbetiae_contig15349:345..4130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score209.1
Seed ortholog evalue1.8e-51
Seed eggNOG ortholog44056.XP_009032831.1
KEGG koko:K00784
KEGG Pathwayko03013,map03013
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.3'-tRNA processing endoribonuclease activity
EggNOG OGsCOG1234@1,KOG2121@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004335.1
EC3.1.26.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons5
Model size817
Cds size597
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.2239113-UTR-L-elsbetiae_contig15349:344..5251622815625.2239113-UTR-L-elsbetiae_contig15349:344..525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15349 345..525 -
1691682998.666752-UTR-L-elsbetiae_contig15349:344..5251691682998.666752-UTR-L-elsbetiae_contig15349:344..525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15349 345..525 -
1622815625.296777-UTR-L-elsbetiae_contig15349:4091..41301622815625.296777-UTR-L-elsbetiae_contig15349:4091..4130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15349 4092..4130 -
1691682998.730199-UTR-L-elsbetiae_contig15349:4091..41301691682998.730199-UTR-L-elsbetiae_contig15349:4091..4130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15349 4092..4130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.2361944-CDS-L-elsbetiae_contig15349:525..6091622815625.2361944-CDS-L-elsbetiae_contig15349:525..609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 526..609 -
1691682998.677733-CDS-L-elsbetiae_contig15349:525..6091691682998.677733-CDS-L-elsbetiae_contig15349:525..609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 526..609 -
1622815625.2474284-CDS-L-elsbetiae_contig15349:1587..16631622815625.2474284-CDS-L-elsbetiae_contig15349:1587..1663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 1588..1663 -
1691682998.6857927-CDS-L-elsbetiae_contig15349:1587..16631691682998.6857927-CDS-L-elsbetiae_contig15349:1587..1663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 1588..1663 -
1622815625.259441-CDS-L-elsbetiae_contig15349:2021..21761622815625.259441-CDS-L-elsbetiae_contig15349:2021..2176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 2022..2176 -
1691682998.695837-CDS-L-elsbetiae_contig15349:2021..21761691682998.695837-CDS-L-elsbetiae_contig15349:2021..2176Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 2022..2176 -
1622815625.2700162-CDS-L-elsbetiae_contig15349:3338..34941622815625.2700162-CDS-L-elsbetiae_contig15349:3338..3494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 3339..3494 -
1691682998.7124624-CDS-L-elsbetiae_contig15349:3338..34941691682998.7124624-CDS-L-elsbetiae_contig15349:3338..3494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 3339..3494 -
1622815625.2833073-CDS-L-elsbetiae_contig15349:3965..40911622815625.2833073-CDS-L-elsbetiae_contig15349:3965..4091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 3966..4091 -
1691682998.7218628-CDS-L-elsbetiae_contig15349:3965..40911691682998.7218628-CDS-L-elsbetiae_contig15349:3965..4091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15349 3966..4091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15349.3787.1prot_L-elsbetiae_contig15349.3787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15349 526..4091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15349.3787.1

>prot_L-elsbetiae_contig15349.3787.1 ID=prot_L-elsbetiae_contig15349.3787.1|Name=mRNA_L-elsbetiae_contig15349.3787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MQLAFLGTASCIPSASRGVSCTVLRNAGDLWLFDVGEGTQVQIQKSNLKP
TRITKIFITHAHGDHTFGLPGMLCLMGTNFDRADSRRVEIYGPTGLRAYL
RAAIKYAYARAVCPYVVHELCDVPYLHGDFNKEPEPFHVNMARDSNYGEQ
SGGRNFYPDKNGHYELFQDDQLTVRAAPLKHGVPCVGFAVEETNRPGR*
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mRNA from alignment at L-elsbetiae_contig15349:345..4130-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15349.3787.1 ID=mRNA_L-elsbetiae_contig15349.3787.1|Name=mRNA_L-elsbetiae_contig15349.3787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3786bp|location=Sequence derived from alignment at L-elsbetiae_contig15349:345..4130- (Laminarionema elsbetiae ELsaHSoW15)
AGAGAGAACCGCTTCCACGTGCCCGCCGCCGGTGCCCGCATGCAGCTCGC ATTTCTCGGCACGGCCTCGTGCATCCCCTCCGCTTCGAGGGGTGTCTCCT GCACTGTACTGAGGAACGCGGGGGATCTGTGGCTGTTCGACGTCGGGGAA GGGACCCAGGTCCAGGTGAGGAGGGGACCCCGGCCCAGCTGCTGTGTGTG TGTGTGTGTGTGTGTGTGCTTGTGTACGTACACGACGTGGTCAGTCCGTG CGAGCGAGCGAGCGTGCGTGCGTGCGTGCGTGCGTGTGCTGTTCCAGCGG TTCGTGCTCTTTTTGTTGGTTGCGGGCGCTTGGGGCGCTTCACGCTTGCT ATCTAGGTTGTAAGCCGTGCTGATGTTGCTCCTGTTTCCGTTGCGTTTCC TATCTTGCTCCGCCCTCTCCTGTCTTCCTACTGCTGCTGCTGCTGCTGCT GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCCGCTGG TGCCGGTGCCCACGGTGTCGAAAAATCGTGGAAACGGCGAACAACGAACC AACGCATTTTCTGTCTGGGGTTCGGTTTGGGTTGGGGTGGGGCGGTGCGC GCACGCGCGGGGGGGGGGGGGGTGATCGCGGAGCAGATCCAGAAGAGCAA CCTGAAGCCTACACGGATCACCAAAATCTTCATCACACACGCCCACGGGG ATCACACCTTCGGCCTCCCCGGAATGCTGTGTCTTATGGGGACCAATTTT GACAGGGCCGACTCCAGGCGGGTGGAGATTTACGGTCCCACGGTGAGCAT CACAGGCGACACACGATCCGGTTCTGGGGCGTGTGTGAGGGGACCCGGCG GGTCGGGGGGGCCCGGGGGGGGCCCGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGCGGAGGCGGGAA GGGTTGGTTGGCACCACACACACCTGTATGCTGGTGCCACCTCAAAGCTA AAGCAATACCGCGGGGAGTGGCTCGAGTGCTTTTTCTCGCATGTCTTGCT TGGGCAGGGACGTTTAGATCCTCCGTGCCCCCACGTAGGGTCGAAGTCAC CCATGCAGCGGTGTGGAAGAACACACGCAGGAGTAGCGCCGGGGGGGGGG GCGTGGTGCTTGAGGAAGTACGTACATAGCTGCTGCAACTCTGTTTGAAT GCGGGTGTTTTAGCACCGCCCTCCCTCTTTCCTGGTCCCCCGGCTCGATG GAACTCCCGTTGCGGTGTATCCTTGTCTTCCTCCCCTGCATGGCTGTGTG TCGGGACGATGAAATATGGATCGATGGGCTTGGTGACGGCATGTGACCCT GCGTTTTCGCGATCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCTTCTTTTTTCTTTTTTCGGGGGGGGGGTGGCGGGGCTGCCCCTC CCCCGGGTTTGTATTCTTTTTTTTNNNNNNNNNNAATAGTGTGTGGGGGG TTGTGGGGGGGCGTGTGCCCCCGCTTTTTCGCCTCCCCCCCCCCCCCCCC CCCATCCTCCTCCTCCTCCACCCTACTTGTTTCTATGTATTGTAGAGAGG GGCTTGTTGGCGTGCGTCTTCCGCAGTGATATTACTATATTTTAGCTCGC TGGCTTTGTGTTTTCACGGCGATAGTTATCTCCATGTTGTCCTGTCCTCT CGATCTCTTGTCTCGGTCTCTCTTGTCTCGGTCTCTCTTTATTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGC TCTCTCTCGCGCTCTCGCTCTCGATCTCGCTCCCATCTCTCTCTCTCTCT CCCATCTCTCCATGTGTCTCTCTGTCTTTTGTCTTGGTTTACGTTTATTC TTTGTTTATTCTAATCTACCCCGCTCTCCCTCCTCCCCTCCTCCCTCCTC GCAGGGTCTGCGCGCGTACCTGCGCGCCGCGATCAAGTACGCCTACGCCA GGGCCGTGTGCCCGTACGTGGTGCACGAGCTGTGCGACGTGCCGTATCTC CACGGCGACTTCAATAAAGAGCCGGAGCCCTTCCACGTGAACATGGCGCG TGACAGCAAGTAAGGGGTGTTGAGGTTACTCTCACATGTGACAGCAGACT GTGTGTGTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCC CAAGTGGAGACATGTACTACACCTTGCGGTGTACTTAGAGGTACTATCTC AGGAAAGTTTTATCTTTCCAAGAATCTCAGGAAAATTTTATCTTTCCAAT AATCATAACTTGTTTATATTTGTTGTTTGATTAATACAACATAAATAGCA CCGTGAGCACCCCCCGTTGGGGAGGTGCGGTCTGCGCCCCGATTCGGTCC TAACTTTCGTTATTTGTGGAGTGCATGCTTATATACATCTGTATTATTGT TTTCGCGTATTACACAGTTACGGCGAGCAAAGCGGAGGCCGGAATTTCTA CCCGGACAAGAACGGGCACTACGAGCTGTTCCAAGATGACCAGGTGGGCT GTGTAATCGAAAACCGGTTCGGTTCGGTTCGGTTTAGGTTCGGTTCGGTT AGGTTAGGTTAGGTTCGGTTCGGTTCATGTTTTGTTTATAGGAGACAGTG ACTGCCCCTAGGAGACAGCGCGACATCGCTCGGTTCGGTTCGGTTCGGTT CGGTCAATGTTTTTTTTACATGCAGGAGACAGCACGACAGCGCGGCAGCG CCTTTTATGTACACGTTCTACATATGCTAATACCTTGAGCTGATTCGAAA ACGGCTGTGCATTCGCGTGGCTACGTCGAAGGTCCCCCGCGGTGCGGGTC CTCTCTCCTCTCCCCTTTTCTTTTGTTCACTCCCACGGGCAACGGGCAAG AGGCCTGTCTTTTTCAGCCAGCCACACCAGGCGCACGCATAGTGGTTGCG AGGGGGACACGTGGTTGCCAGCGCGGGGGGTGGAGGGTATAGGGTATAGT CGGATCAGGGGAGGGAGGAGTCCGACTTGGGGTCGAAACTGGCGTGTTTC CCTGTCGCGCTCACATTTTTCACACATGTGTGTTACATACTATACGTCAA TCTCTGTCGCCTTGGTGATCGTGTTCGATGAAAATATCACGGGGAGATAA ATACTCGCGCTTTACTTTAGTGCGTGTGTGCGTCCGAGTCGATTCTATTC TCACGGCCTGCTTCGGTCTTCTATTAAGACTCCCGCCCCGCTCTCCGCTC TCCGCCCCCGTCCTTTCCATCTCTCTCTCTCTCTCTCTCTCTCTCGCTCT CTCTTTCTCTCCCCCCCCCCCCTCATCTCTCTCTCTCTTTCTCTTCCTCG CTCTCGCTCTCGCTCTCTATCTGTATCTCTCTATCTCTCTCTCTCTACCC CCCCCCCCTCTCTCTCTCTCTCTCTCTCGTCCACCCTTGTTTTTTTGGTA CATGCGCGCGCCCGCTGCTGTTTCCTGCCGGCTTGTGGGTGAATGCTGTT CGGGGTTCGATGGTTGATCAGCTGACTGTCCGGGCGGCGCCTTTGAAGCA CGGGGTTCCATGCGTCGGGTTCGCCGTTGAGGAGACCAACCGCCCCGGGA GGTGACAAAGTAGTTCCGCAAGATCGCAAGATGGGAGGGAGCATTTTGGC AGACTTTTTATTTTTTTATTTCATTGTTATGATTGGCTGGTTCGTCGTCT GTCCCCACTGCCCCCCCCCCTCCTCCACTACGGCTAGCCAGACGACCCAA CCGGGGTCACACACAAAGTATGTCGGTATGTACATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15349:345..4130-

>mRNA_L-elsbetiae_contig15349.3787.1 ID=mRNA_L-elsbetiae_contig15349.3787.1|Name=mRNA_L-elsbetiae_contig15349.3787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig15349:345..4130- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTCGCATTTCTCGGCACGGCCTCGTGCATCCCCTCCGCTTCGAG
GGGTGTCTCCTGCACTGTACTGAGGAACGCGGGGGATCTGTGGCTGTTCG
ACGTCGGGGAAGGGACCCAGGTCCAGATGCAGCTCGCATTTCTCGGCACG
GCCTCGTGCATCCCCTCCGCTTCGAGGGGTGTCTCCTGCACTGTACTGAG
GAACGCGGGGGATCTGTGGCTGTTCGACGTCGGGGAAGGGACCCAGGTCC
AGATCCAGAAGAGCAACCTGAAGCCTACACGGATCACCAAAATCTTCATC
ACACACGCCCACGGGGATCACACCTTCGGCCTCCCCGGAATGCTGTGTCT
TATGGGGACCAATTTTGACAGGGCCGACTCCAGGCGGGTGGAGATTTACG
GTCCCACGATCCAGAAGAGCAACCTGAAGCCTACACGGATCACCAAAATC
TTCATCACACACGCCCACGGGGATCACACCTTCGGCCTCCCCGGAATGCT
GTGTCTTATGGGGACCAATTTTGACAGGGCCGACTCCAGGCGGGTGGAGA
TTTACGGTCCCACGGGTCTGCGCGCGTACCTGCGCGCCGCGATCAAGTAC
GCCTACGCCAGGGCCGTGTGCCCGTACGTGGTGCACGAGCTGTGCGACGT
GCCGTATCTCCACGGCGACTTCAATAAAGAGCCGGAGCCCTTCCACGTGA
ACATGGCGCGTGACAGCAAGGTCTGCGCGCGTACCTGCGCGCCGCGATCA
AGTACGCCTACGCCAGGGCCGTGTGCCCGTACGTGGTGCACGAGCTGTGC
GACGTGCCGTATCTCCACGGCGACTTCAATAAAGAGCCGGAGCCCTTCCA
CGTGAACATGGCGCGTGACAGCAATTACGGCGAGCAAAGCGGAGGCCGGA
ATTTCTACCCGGACAAGAACGGGCACTACGAGCTGTTCCAAGATGACCAG
TTACGGCGAGCAAAGCGGAGGCCGGAATTTCTACCCGGACAAGAACGGGC
ACTACGAGCTGTTCCAAGATGACCAGCTGACTGTCCGGGCGGCGCCTTTG
AAGCACGGGGTTCCATGCGTCGGGTTCGCCGTTGAGGAGACCAACCGCCC
CGGGAGGTGACTGACTGTCCGGGCGGCGCCTTTGAAGCACGGGGTTCCAT
GCGTCGGGTTCGCCGTTGAGGAGACCAACCGCCCCGGGAGGTGA
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