mRNA_L-elsbetiae_contig15346.3786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15346.3786.1
Unique NamemRNA_L-elsbetiae_contig15346.3786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A0A6H5LC65_9PHAE (B box-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC65_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 8.460e-26
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQQCPSVSQEMRRILRIVQS CGPWVGLSVVHLGDRDVPNALVFIDKYTQ+ R +
Sbjct:  549 RVQQCPSVSQEMRRILRIVQSTCGPWVGLSVVHLGDRDVPNALVFIDKYTQIPRIL 604
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: D7G209_ECTSI (B box-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G209_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.150e-25
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQQCPSVSQEMRRILR+VQS CGPWVGLSVVHLGDRDVPNALVFIDKYTQ+ R +
Sbjct:  544 RVQQCPSVSQEMRRILRVVQSTCGPWVGLSVVHLGDRDVPNALVFIDKYTQIPRIL 599
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A0A7R9UG75_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG75_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.210e-21
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ+CP+V  EMRRIL  VQ +CGPWVGLSVVHLGDRDVPNAL+FIDKYTQ+ R +
Sbjct:  457 RVQRCPNVRAEMRRILAEVQRRCGPWVGLSVVHLGDRDVPNALMFIDKYTQIPRIL 512
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A9V2F5_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V2F5_MONBE)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-20
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ CP+V   M++ILR VQSKCG WVGLSVVHLGDRDVPNAL+FIDKYTQV R +
Sbjct:  427 RVQSCPTVGNAMQKILRSVQSKCGQWVGLSVVHLGDRDVPNALIFIDKYTQVPRIL 482
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: F2U5S4_SALR5 (B box-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5S4_SALR5)

HSP 1 Score: 90.1 bits (222), Expect = 8.680e-20
Identity = 43/56 (76.79%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            R+QQCP+VSQ M RIL  VQ +CG WVGLSVVHLGDRDVPNAL FIDKYTQV R +
Sbjct:  318 RMQQCPTVSQAMHRILGSVQRRCGRWVGLSVVHLGDRDVPNALFFIDKYTQVPRML 373
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A0A7S0HDZ9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HDZ9_9CRYP)

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-19
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ  P ++  M  IL  VQSKCG WVGLSVVHLGDRDVPNALVFIDKYTQ++R +
Sbjct:   27 RVQSAPKIAHAMHAILSKVQSKCGSWVGLSVVHLGDRDVPNALVFIDKYTQIARLL 82
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: W7TKN4_9STRA (B box-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKN4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.610e-19
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ CP+V  EMR IL+ VQ +CG WVGLSVVHLGDRDVPNAL+FIDKYTQV R +
Sbjct:  536 RVQACPAVGAEMRSILQRVQRECGAWVGLSVVHLGDRDVPNALMFIDKYTQVPRIL 591
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A0A6V1PHG9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PHG9_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-18
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCG-PWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ CP+V +EMRR+L   Q   G PWVGLSVVHLGDRDVPNALVFIDKYTQV R +
Sbjct:   60 RVQGCPNVGREMRRVLARAQRAAGAPWVGLSVVHLGDRDVPNALVFIDKYTQVPRIL 116
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A0A836CCT5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-18
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ CPSVS  MR +L  VQS+CG WVGLSVVHLGDRDVPNAL FIDKY Q+ R +
Sbjct:  409 RVQNCPSVSAVMRSVLSRVQSECGAWVGLSVVHLGDRDVPNALAFIDKYAQIPRIL 464
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BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Match: A0A813B145_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B145_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 3.350e-18
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYTQVSRFV 168
            RVQ  P VS+ M +IL  VQ++ G WVGLSVVHLGDRDVPNALVFIDKYTQV R +
Sbjct:   20 RVQHAPRVSRAMHQILHKVQNEVGNWVGLSVVHLGDRDVPNALVFIDKYTQVPRIL 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15346.3786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LC65_9PHAE8.460e-2691.07B box-type domain-containing protein n=1 Tax=Ectoc... [more]
D7G209_ECTSI1.150e-2589.29B box-type domain-containing protein n=1 Tax=Ectoc... [more]
A0A7R9UG75_9STRA6.210e-2176.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A9V2F5_MONBE1.140e-2076.79Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F2U5S4_SALR58.680e-2076.79B box-type domain-containing protein n=1 Tax=Salpi... [more]
A0A7S0HDZ9_9CRYP1.420e-1971.43Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
W7TKN4_9STRA3.610e-1975.00B box-type domain-containing protein n=2 Tax=Monod... [more]
A0A6V1PHG9_HETAK1.170e-1873.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CCT5_9STRA1.240e-1873.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A813B145_9DINO3.350e-1871.43Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15346contigL-elsbetiae_contig15346:996..1163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score95.1
Seed ortholog evalue1.1e-17
Seed eggNOG ortholog81824.XP_001746960.1
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF2009)
EggNOG OGs28J77@1,2QRJJ@2759,38CC6@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.1891701-CDS-L-elsbetiae_contig15346:995..11631622815625.1891701-CDS-L-elsbetiae_contig15346:995..1163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15346 996..1163 -
1691682998.656011-CDS-L-elsbetiae_contig15346:995..11631691682998.656011-CDS-L-elsbetiae_contig15346:995..1163Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15346 996..1163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15346.3786.1prot_L-elsbetiae_contig15346.3786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15346 996..1163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15346.3786.1

>prot_L-elsbetiae_contig15346.3786.1 ID=prot_L-elsbetiae_contig15346.3786.1|Name=mRNA_L-elsbetiae_contig15346.3786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
RVQQCPSVSQEMRRILRIVQSKCGPWVGLSVVHLGDRDVPNALVFIDKYT
QVSRFV
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mRNA from alignment at L-elsbetiae_contig15346:996..1163-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15346.3786.1 ID=mRNA_L-elsbetiae_contig15346.3786.1|Name=mRNA_L-elsbetiae_contig15346.3786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=168bp|location=Sequence derived from alignment at L-elsbetiae_contig15346:996..1163- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTCCAGCAGTGCCCCTCGGTGAGCCAGGAGATGCGGCGCATCCTGAG
AATAGTCCAGTCCAAGTGTGGCCCGTGGGTCGGGCTGAGCGTGGTGCACC
TGGGGGACCGGGACGTGCCCAACGCGCTCGTCTTCATCGACAAGTACACC
CAGGTCAGCCGGTTCGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15346:996..1163-

>mRNA_L-elsbetiae_contig15346.3786.1 ID=mRNA_L-elsbetiae_contig15346.3786.1|Name=mRNA_L-elsbetiae_contig15346.3786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig15346:996..1163- (Laminarionema elsbetiae ELsaHSoW15)
AGGGTCCAGCAGTGCCCCTCGGTGAGCCAGGAGATGCGGCGCATCCTGAG
AATAGTCCAGTCCAAGTGTGGCCCGTGGGTCGGGCTGAGCGTGGTGCACC
TGGGGGACCGGGACGTGCCCAACGCGCTCGTCTTCATCGACAAGTACACC
CAGGTCAGCCGGTTCGTGAGGGTCCAGCAGTGCCCCTCGGTGAGCCAGGA
GATGCGGCGCATCCTGAGAATAGTCCAGTCCAAGTGTGGCCCGTGGGTCG
GGCTGAGCGTGGTGCACCTGGGGGACCGGGACGTGCCCAACGCGCTCGTC
TTCATCGACAAGTACACCCAGGTCAGCCGGTTCGTG
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