mRNA_L-elsbetiae_contig15343.3785.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15343.3785.1
Unique NamemRNA_L-elsbetiae_contig15343.3785.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15343.3785.1 vs. uniprot
Match: D7G7J9_ECTSI (Apt1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J9_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 2.570e-45
Identity = 142/192 (73.96%), Postives = 145/192 (75.52%), Query Frame = 1 
Query:    1 LHLKRLKLELWRDESNTPFLRAEVRRVTADVMVYDDSSGSLDLQVGSLWASQVRGYGYNTAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPLFALEVVKPLMRQDLERLSDQGNLRGWSPRDVTVHVQAQLGSPIG 576
            LHLKRLKLELWRDESN PFLRAEVRRVTADVMVYDDSSGS+DLQVGSLWASQVRG GYN A A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                       QQ L ALEVVKPLMRQDLERLSDQGNLRGWSPR++TVHVQ QLGSPIG
Sbjct:  367 LHLKRLKLELWRDESNAPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYNPAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERGASDWWRAGEGGPADAARAG----------------QQTLMALEVVKPLMRQDLERLSDQGNLRGWSPREITVHVQIQLGSPIG 542
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BLAST of mRNA_L-elsbetiae_contig15343.3785.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.830e-27
Identity = 92/168 (54.76%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:    1 LHLKRLKLELWRDESNTPFLRAEVRRVTADVMVYDDSSGSLDLQVGSLWASQVRGYGYNTAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQPLFALEVVKPLMRQDLERLSDQ 504
            LHLKRLKLELWRDES+TPFLRAEVRRVTADVMVYDDSSGS+DLQVGSLWASQVRG GY+ A A XXXXXXXXXXXX XX                                                                 QQ L ALEVVKPL+RQDLERLSDQ
Sbjct:  862 LHLKRLKLELWRDESSTPFLRAEVRRVTADVMVYDDSSGSVDLQVGSLWASQVRGCGYSPAEAAXXXXXXXXXXXXGXXSTPLSPTQTGRQGKKTRGLAAAATKEEGEERGASDWWRAGEWGPADAARAG--------------QQTLMALEVVKPLLRQDLERLSDQ 1015
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15343.3785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7J9_ECTSI2.570e-4573.96Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUC4_9PHAE2.830e-2754.76Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15343contigL-elsbetiae_contig15343:900..3727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size579
Cds size579
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15343.3785.1prot_L-elsbetiae_contig15343.3785.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15343 900..3727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.1234274-CDS-L-elsbetiae_contig15343:899..10311622815625.1234274-CDS-L-elsbetiae_contig15343:899..1031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 900..1031 +
1691682998.6049027-CDS-L-elsbetiae_contig15343:899..10311691682998.6049027-CDS-L-elsbetiae_contig15343:899..1031Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 900..1031 +
1622815625.1350899-CDS-L-elsbetiae_contig15343:1480..17801622815625.1350899-CDS-L-elsbetiae_contig15343:1480..1780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 1481..1780 +
1691682998.6212695-CDS-L-elsbetiae_contig15343:1480..17801691682998.6212695-CDS-L-elsbetiae_contig15343:1480..1780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 1481..1780 +
1622815625.1449404-CDS-L-elsbetiae_contig15343:1819..18911622815625.1449404-CDS-L-elsbetiae_contig15343:1819..1891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 1820..1891 +
1691682998.6359975-CDS-L-elsbetiae_contig15343:1819..18911691682998.6359975-CDS-L-elsbetiae_contig15343:1819..1891Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 1820..1891 +
1622815625.1546512-CDS-L-elsbetiae_contig15343:3652..37271622815625.1546512-CDS-L-elsbetiae_contig15343:3652..3727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 3653..3727 +
1691682998.6468825-CDS-L-elsbetiae_contig15343:3652..37271691682998.6468825-CDS-L-elsbetiae_contig15343:3652..3727Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15343 3653..3727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15343.3785.1

>prot_L-elsbetiae_contig15343.3785.1 ID=prot_L-elsbetiae_contig15343.3785.1|Name=mRNA_L-elsbetiae_contig15343.3785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
LHLKRLKLELWRDESNTPFLRAEVRRVTADVMVYDDSSGSLDLQVGSLWA
SQVRGYGYNTAAAETAAAAAAAPPPPPPPPLPPRKPGQPVTTPAAAAAAT
AAAAAAAAAALLEDDEDKDSEWWRAGEGGATAAAAAAAASGGGGQQPLFA
LEVVKPLMRQDLERLSDQGNLRGWSPRDVTVHVQAQLGSPIG*
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mRNA from alignment at L-elsbetiae_contig15343:900..3727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15343.3785.1 ID=mRNA_L-elsbetiae_contig15343.3785.1|Name=mRNA_L-elsbetiae_contig15343.3785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2828bp|location=Sequence derived from alignment at L-elsbetiae_contig15343:900..3727+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCACCTGAAGCGCCTGAAGCTGGAGCTATGGCGCGACGAAAGCAACAC
CCCTTTCCTCAGGGCGGAGGTGCGGCGCGTCACGGCCGACGTCATGGTCT
ACGACGACTCCTCCGGCAGCCTCGACCTGCAGGTACTATTTACTACTACT
ACACACCTCTGTACGCACACACGGCCCGGGGCTCCGACTCGGCGTTGCGC
TGCGTTGCGTTTTTATCGTGGTTGTGCTGGGCTGTCTCGGCCTTAGCCTT
GGCCTTGGTCTTGGTGTGTGTGTGTGTGTGTGTGTGTGTATTGCCTTCAC
ATTAAAAGCCGTTCCGATCTCTCTATCCAGTACACCTCCATGAGTCCGTA
CTCATCCAACACCGACGCGGTCGATTCCTGTGGCCACAGGATTACTTGCC
GTAAAGAGGGTATAGACTCGTACACTTGAAAAATGAAAAATGAAAATTAC
GTCGGAAAAAAACACACGAGGACTTTGTTTTGACCTGTTTGCTGTGTGTG
CCCTCGGTGTTTATGTTTTTTTTTCTTTCTTTTTTCTTGTCTTGTTTTGC
CTGGTATTTGCCTTTGTGCGGTGCCGTTCAGGTGGGTTCGTTGTGGGCGA
GCCAGGTGCGGGGTTACGGGTACAACACCGCCGCTGCGGAAACAGCAGCA
GCAGCAGCAGCAGCGCCGCCGCCACCGCCGCCGCCGCCTCTACCACCACG
AAAACCTGGCCAACCGGTTACGACGCCAGCGGCGGCGGCGGCAGCGACAG
CAGCGGCGGCGGCGGCAGCGGCGGCGGCACTGTTGGAAGACGACGAGGAT
AAAGATTCAGAGTGGTGGCGTGCAGGAGAGGGGGGTGCAACAGCAGCAGC
AGCAGCAGCAGCAGCATCCGGAGGAGGAGGAGTAGCAGCAGCAGGGGGCA
CGGGAGAACAGCAGCAGCAGCAGCAGCCTCTTTTTGCTCTGGAGGTCGTG
AAGCCCCTTATGCGGCAGGACTTGGAGAGGCTGTCGGACCAGGTGTGTGT
GTGTGCGTGCCCGTGTGTGTGTGTGTGGGTGTGTGTGTGTGGGTGTGTGT
GGGTGTGTGTGGGTGTGGGTGTGGGTGTGGGTGTGGTTGTGGTTGTTGGT
GTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGCGAAAGTGAGG
TCAGGCTCTTCGTCTTTGTTTTTTGGTGTTGACAGCCCGGCTCGCGGTAA
AAAGGGACAAGCGACGCTTTCCCTGGCTGGGTGGCGTTTCGTTTTTCGAA
CGTTGTTGTGTGGTTTTGTTTGTGCCCATCCATATGGCATGGCGTACCAG
TGGTTTCGGCTGCGTGCAGATAGAAGGGAATGCTTCTTCGACAACGCCGT
GATCGTCATCGTGGTCGTCATCCAAAGGGGCATGCGGGTTGCATTACCTC
ACACCTATGCCTACAAACTGACTTGAGTGGAAATTTTGGGGGGGTATGTA
TGCTAATTCCTCCTCCTATATTTTTGTTTGGGGGGGGGGGGGGCCAGCCT
AGGTTCTTAAGGGGGGCGCGGTTATGTGGGTATCCCCCAACGGATCCCTC
TATACCATTTTCTACATGTCTTACCAAACTGGACTACGCCGGAAAACGTG
CAGTAGTCTACGCGGGGTTTTTGTCTTAAGCTAACATATGGGATAAAGTA
TGGAAACCGTTTGGGGGGGTCGGCGGTTAGGGTTAGGGTTAGGGTTAGGG
TTAGAGTTAGTAGTATAAAATTAATTTCTGCGTAGGTGGTCCAAGACGTG
GGACCGAGGGGGGGGGTAAGTGTGAGGTATTGCAGCCCGCGAGCCCCCTT
TTGCGTCATCGTCATCGTCGTCGTCGTCATCGTCGTCGTCGTCTTTGCTG
TTGCTCAGCTTTTGTTTCTCAAGTATGTTATGTAGCCGTCCACTTCAATA
ACGATTTAGCAGCACAGGACGAAGTACAGCTGTGTTTTGCGCCGCCGCGT
AGTATTCCGTCCGCGACATACATAGCACCCCGTATGCCGCAGCATAGCGT
TGCATCCGTGTGTAGCGTAGTACTCCCGGCGCCCGGGAATCTGCCCTCGA
GGGCAGATGGGAACGCCCTGCCCTCAAGCTATTTCACCGGTTACAGTGAC
CTAGAACCTAACCAATGCACACCATTCTAGCTTAGGGGTTGGGTTAGGGT
TAGGGTTGGGTTAGGGTTAGGGTTTAGGGTTAGGGTTTAGGGTTGGGACA
GCTGTGAACTAGGCTGACTGCTGGAAACCCGCCGTGCATTTCTCTGCGTG
TCTACCTCCAAGAACAATGTTGCACCGTCTTGAGGGCAGGCATTTTCCTG
TCTGCCCTCGAGTGCAGATTCCCGGGCGCCGTAGTACTCCATACTGCTGT
CGCTTGTCAGCGGGTGGGGTCGTAGTGCACTACCTTCCTACCCGCAAAAG
CGTCACATGCACGCCGCACGCTCCTCATGGTTTGGTTTGGCGCTGTGGCC
CGGAACGCAACGATCTTGTGTACTTCTCTCTAACAGCATCTCTCTCGCTC
TGATGCCAGTCCACGTGCTGGTTGACCTGAGCGGAGAAAATTGTCGCCAA
AAGGCTTTGCCCGATCACGTCCGACTTTTGACACGGACGGCACGCGTAAA
TAAGCTTATTTTCCAACCTTGGGGATTCAAACCACACAATTTTCGTCTTC
AACCCCCCCCCTCCCCCTCCCTCCCCCCCGATAAACAATTCTGCGACGCC
CCCACCCCCCTATCGTGTTTGACCTGATCTGCTGCAAAATCCTCAATAAC
CAGGGAAACCTGCGTGGCTGGTCGCCCCGAGATGTCACGGTGCACGTGCA
GGCGCAGCTGGGGTCTCCCATCGGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15343:900..3727+

>mRNA_L-elsbetiae_contig15343.3785.1 ID=mRNA_L-elsbetiae_contig15343.3785.1|Name=mRNA_L-elsbetiae_contig15343.3785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig15343:900..3727+ (Laminarionema elsbetiae ELsaHSoW15)
CTTCACCTGAAGCGCCTGAAGCTGGAGCTATGGCGCGACGAAAGCAACAC
CCCTTTCCTCAGGGCGGAGGTGCGGCGCGTCACGGCCGACGTCATGGTCT
ACGACGACTCCTCCGGCAGCCTCGACCTGCAGCTTCACCTGAAGCGCCTG
AAGCTGGAGCTATGGCGCGACGAAAGCAACACCCCTTTCCTCAGGGCGGA
GGTGCGGCGCGTCACGGCCGACGTCATGGTCTACGACGACTCCTCCGGCA
GCCTCGACCTGCAGGTGGGTTCGTTGTGGGCGAGCCAGGTGCGGGGTTAC
GGGTACAACACCGCCGCTGCGGAAACAGCAGCAGCAGCAGCAGCAGCGCC
GCCGCCACCGCCGCCGCCGCCTCTACCACCACGAAAACCTGGCCAACCGG
TTACGACGCCAGCGGCGGCGGCGGCAGCGACAGCAGCGGCGGCGGCGGCA
GCGGCGGCGGCACTGTTGGAAGACGACGAGGATAAAGATTCAGAGTGGTG
GCGTGCAGGAGAGGGGGGTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAT
CCGGAGGAGGAGGAGTGGGTTCGTTGTGGGCGAGCCAGGTGCGGGGTTAC
GGGTACAACACCGCCGCTGCGGAAACAGCAGCAGCAGCAGCAGCAGCGCC
GCCGCCACCGCCGCCGCCGCCTCTACCACCACGAAAACCTGGCCAACCGG
TTACGACGCCAGCGGCGGCGGCGGCAGCGACAGCAGCGGCGGCGGCGGCA
GCGGCGGCGGCACTGTTGGAAGACGACGAGGATAAAGATTCAGAGTGGTG
GCGTGCAGGAGAGGGGGGTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAT
CCGGAGGAGGAGGACAGCAGCCTCTTTTTGCTCTGGAGGTCGTGAAGCCC
CTTATGCGGCAGGACTTGGAGAGGCTGTCGGACCAGCAGCAGCCTCTTTT
TGCTCTGGAGGTCGTGAAGCCCCTTATGCGGCAGGACTTGGAGAGGCTGT
CGGACCAGGGAAACCTGCGTGGCTGGTCGCCCCGAGATGTCACGGTGCAC
GTGCAGGCGCAGCTGGGGTCTCCCATCGGGTAAGGAAACCTGCGTGGCTG
GTCGCCCCGAGATGTCACGGTGCACGTGCAGGCGCAGCTGGGGTCTCCCA
TCGGGTAA
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