mRNA_L-elsbetiae_contig15340.3783.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15340.3783.1
Unique NamemRNA_L-elsbetiae_contig15340.3783.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15340.3783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15340contigL-elsbetiae_contig15340:1215..2234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1022
Cds size900
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.9945705-CDS-L-elsbetiae_contig15340:1214..21141622815624.9945705-CDS-L-elsbetiae_contig15340:1214..2114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15340 1215..2114 +
1691682998.5344577-CDS-L-elsbetiae_contig15340:1214..21141691682998.5344577-CDS-L-elsbetiae_contig15340:1214..2114Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15340 1215..2114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815625.010678-UTR-L-elsbetiae_contig15340:2114..22341622815625.010678-UTR-L-elsbetiae_contig15340:2114..2234Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15340 2115..2234 +
1691682998.5434504-UTR-L-elsbetiae_contig15340:2114..22341691682998.5434504-UTR-L-elsbetiae_contig15340:2114..2234Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15340 2115..2234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15340.3783.1prot_L-elsbetiae_contig15340.3783.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15340 1215..2114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15340.3783.1

>prot_L-elsbetiae_contig15340.3783.1 ID=prot_L-elsbetiae_contig15340.3783.1|Name=mRNA_L-elsbetiae_contig15340.3783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=300bp
PRGSGRFAVVDGCPVRGDGAVGVGVPERVEEVRERDGKVASVGRVVAVLL
HLHLVGAAYRFDGGDSGGAVGHEVERGGGRVFDGPPVTRGVCFLVYRGHV
KEAPVEEGVVGVGDDDGLVPPGDLAQVGGDGELDAGVAPVRRGGGGCRLT
LASLFLLDLLLGFGGGQLVGVVEKEKLLAGVVGDSSRGAHLVQLAFGVLL
KLSQAGSPCGALGGVLGCALVCLAGDVGLRGLQFDEAGACLTGFLGGVGV
FLLKLLPLQLLRLEAGHLLAITAGLVDEVPFSDDAVLEGHGLGVPVIFA*
back to top

mRNA from alignment at L-elsbetiae_contig15340:1215..2234+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15340.3783.1 ID=mRNA_L-elsbetiae_contig15340.3783.1|Name=mRNA_L-elsbetiae_contig15340.3783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig15340:1215..2234+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGCGGCAGCGGCCGGTTTGCTGTGGTCGACGGTTGTCCAGTCAGAGG
TGACGGTGCGGTTGGCGTCGGCGTCCCGGAGCGTGTCGAGGAGGTGCGCG
AGCGCGATGGAAAAGTCGCGAGTGTCGGTCGAGTCGTCGCTGTCCTCCTC
CATCTTCATCTGGTAGGTGCGGCATACCGTTTCGACGGTGGCGATTCTGG
CGGAGCCGTAGGACATGAAGTTGAGCGCGGTGGCGGCCGCGTCTTTGATG
GGCCCCCTGTAACGCGTGGGGTATGCTTTCTGGTCTACCGTGGCCATGTT
AAGGAGGCCCCCGTTGAGGAAGGCGTCGTCGGCGTTGGTGATGATGATGG
CCTTGTACCCCCGGGCGATTTGGCTCAAGTTGGGGGTGACGGCGAGCTTG
ATGCCGGAGTCGCTCCCGTTCGCCGCGGCGGCGGCGGCTGCCGCCTTACG
TTGGCGAGCTTGTTCCTTCTTGATCTTCTGCTTGGTTTTGGAGGCGGACA
GCTGGTCGGGGTTGTCGAAAAGGAGAAGCTCCTCGCTGGCGTGGTCGGCG
ACAGCAGCCGCGGAGCGCACCTCGTCCAGCTGGCTTTTGGTGTCCTCCTC
AAGCTGTCGCAGGCGGGCAGTCCTTGCGGCGCACTCGGCGGCGTACTTGG
CTGCGCTCTCGTCTGCTTGGCGGGCGATGTCGGCTTGCGAGGCCTCCAGT
TTGACGAGGCGGGCGCGTGCTTGACGGGCTTCTTGGGCGGCGTTGGCGTC
TTTTTGTTGAAGCTCTTGCCTCTCCAGCTGTTGCGCCTGGAGGCGGGCCA
CCTCCTGGCGATTACGGCAGGACTTGTCGACGAGGTGCCCTTTTCCGATG
ACGCTGTGCTGGAAGGCCACGGACTGGGAGTTCCAGTCATCTTCGCTTAA
GATGTCGAGCAGGAACGGCGGGATGTTGTCCCAGTCGATGGGGTCCACGT
CCATTCTTGCGATGGTGGGTGCGGCGCCGCCTTGGTCCTCTCGTGTTTCG
GGATCGGGTAGCTCCTCGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15340:1215..2234+

>mRNA_L-elsbetiae_contig15340.3783.1 ID=mRNA_L-elsbetiae_contig15340.3783.1|Name=mRNA_L-elsbetiae_contig15340.3783.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1800bp|location=Sequence derived from alignment at L-elsbetiae_contig15340:1215..2234+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCGCGGCAGCGGCCGGTTTGCTGTGGTCGACGGTTGTCCAGTCAGAGG
TGACGGTGCGGTTGGCGTCGGCGTCCCGGAGCGTGTCGAGGAGGTGCGCG
AGCGCGATGGAAAAGTCGCGAGTGTCGGTCGAGTCGTCGCTGTCCTCCTC
CATCTTCATCTGGTAGGTGCGGCATACCGTTTCGACGGTGGCGATTCTGG
CGGAGCCGTAGGACATGAAGTTGAGCGCGGTGGCGGCCGCGTCTTTGATG
GGCCCCCTGTAACGCGTGGGGTATGCTTTCTGGTCTACCGTGGCCATGTT
AAGGAGGCCCCCGTTGAGGAAGGCGTCGTCGGCGTTGGTGATGATGATGG
CCTTGTACCCCCGGGCGATTTGGCTCAAGTTGGGGGTGACGGCGAGCTTG
ATGCCGGAGTCGCTCCCGTTCGCCGCGGCGGCGGCGGCTGCCGCCTTACG
TTGGCGAGCTTGTTCCTTCTTGATCTTCTGCTTGGTTTTGGAGGCGGACA
GCTGGTCGGGGTTGTCGAAAAGGAGAAGCTCCTCGCTGGCGTGGTCGGCG
ACAGCAGCCGCGGAGCGCACCTCGTCCAGCTGGCTTTTGGTGTCCTCCTC
AAGCTGTCGCAGGCGGGCAGTCCTTGCGGCGCACTCGGCGGCGTACTTGG
CTGCGCTCTCGTCTGCTTGGCGGGCGATGTCGGCTTGCGAGGCCTCCAGT
TTGACGAGGCGGGCGCGTGCTTGACGGGCTTCTTGGGCGGCGTTGGCGTC
TTTTTGTTGAAGCTCTTGCCTCTCCAGCTGTTGCGCCTGGAGGCGGGCCA
CCTCCTGGCGATTACGGCAGGACTTGTCGACGAGGTGCCCTTTTCCGATG
ACGCTGTGCTGGAAGGCCACGGACTGGGAGTTCCAGTCATCTTCGCTTAA
CCGCGCGGCAGCGGCCGGTTTGCTGTGGTCGACGGTTGTCCAGTCAGAGG
TGACGGTGCGGTTGGCGTCGGCGTCCCGGAGCGTGTCGAGGAGGTGCGCG
AGCGCGATGGAAAAGTCGCGAGTGTCGGTCGAGTCGTCGCTGTCCTCCTC
CATCTTCATCTGGTAGGTGCGGCATACCGTTTCGACGGTGGCGATTCTGG
CGGAGCCGTAGGACATGAAGTTGAGCGCGGTGGCGGCCGCGTCTTTGATG
GGCCCCCTGTAACGCGTGGGGTATGCTTTCTGGTCTACCGTGGCCATGTT
AAGGAGGCCCCCGTTGAGGAAGGCGTCGTCGGCGTTGGTGATGATGATGG
CCTTGTACCCCCGGGCGATTTGGCTCAAGTTGGGGGTGACGGCGAGCTTG
ATGCCGGAGTCGCTCCCGTTCGCCGCGGCGGCGGCGGCTGCCGCCTTACG
TTGGCGAGCTTGTTCCTTCTTGATCTTCTGCTTGGTTTTGGAGGCGGACA
GCTGGTCGGGGTTGTCGAAAAGGAGAAGCTCCTCGCTGGCGTGGTCGGCG
ACAGCAGCCGCGGAGCGCACCTCGTCCAGCTGGCTTTTGGTGTCCTCCTC
AAGCTGTCGCAGGCGGGCAGTCCTTGCGGCGCACTCGGCGGCGTACTTGG
CTGCGCTCTCGTCTGCTTGGCGGGCGATGTCGGCTTGCGAGGCCTCCAGT
TTGACGAGGCGGGCGCGTGCTTGACGGGCTTCTTGGGCGGCGTTGGCGTC
TTTTTGTTGAAGCTCTTGCCTCTCCAGCTGTTGCGCCTGGAGGCGGGCCA
CCTCCTGGCGATTACGGCAGGACTTGTCGACGAGGTGCCCTTTTCCGATG
ACGCTGTGCTGGAAGGCCACGGACTGGGAGTTCCAGTCATCTTCGCTTAA
back to top