mRNA_L-elsbetiae_contig1533.3782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1533.3782.1
Unique NamemRNA_L-elsbetiae_contig1533.3782.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1533.3782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1533contigL-elsbetiae_contig1533:22740..23568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size829
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1533.3782.1prot_L-elsbetiae_contig1533.3782.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1533 22954..23556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.7394352-UTR-L-elsbetiae_contig1533:22739..229531622815624.7394352-UTR-L-elsbetiae_contig1533:22739..22953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1533 22740..22953 +
1691682998.4222624-UTR-L-elsbetiae_contig1533:22739..229531691682998.4222624-UTR-L-elsbetiae_contig1533:22739..22953Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1533 22740..22953 +
1622815624.7621136-UTR-L-elsbetiae_contig1533:23556..235681622815624.7621136-UTR-L-elsbetiae_contig1533:23556..23568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1533 23557..23568 +
1691682998.4409626-UTR-L-elsbetiae_contig1533:23556..235681691682998.4409626-UTR-L-elsbetiae_contig1533:23556..23568Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1533 23557..23568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815624.749697-CDS-L-elsbetiae_contig1533:22953..235561622815624.749697-CDS-L-elsbetiae_contig1533:22953..23556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1533 22954..23556 +
1691682998.4326406-CDS-L-elsbetiae_contig1533:22953..235561691682998.4326406-CDS-L-elsbetiae_contig1533:22953..23556Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1533 22954..23556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1533.3782.1

>prot_L-elsbetiae_contig1533.3782.1 ID=prot_L-elsbetiae_contig1533.3782.1|Name=mRNA_L-elsbetiae_contig1533.3782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp
MYLRRPCPRSPSSFIPSERAKPNHNGVSSLKTHAHVVPLSIYISLLSAAI
AAVFIFSRAIAGPPADQSGRLTAVDIHGALPSAFLDSALFSLALSPSRLL
KSGFLPISPSSSLPKSSETREQSSPSLPVHQATMPLAPVHHWLFLAGSAP
ERTTTSAERPPSPPGCMRTATSSRSRSVYQHAPLASVLVCFTSSSPASLR
*
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mRNA from alignment at L-elsbetiae_contig1533:22740..23568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1533.3782.1 ID=mRNA_L-elsbetiae_contig1533.3782.1|Name=mRNA_L-elsbetiae_contig1533.3782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=829bp|location=Sequence derived from alignment at L-elsbetiae_contig1533:22740..23568+ (Laminarionema elsbetiae ELsaHSoW15)
GACTGGCAGAAATAAGCGGCTTGCGTGTGATCGTACATATGTACCACGGG
CGGCCGGCGTGTCTGACGACGCCAAACGCTTCCTCCACAAGTACTTCCGT
TGTTTCATGCGCTCCAATAGCGGCACCAGCGGGCGAACACACCCGACATC
ACCTAAAAAACCAAGAACGACACAAAAAAACGTCACGACTCCAACGAAGA
CGTAGGTACGTCCGATGTACCTTCGTCGGCCGTGCCCCCGATCCCCTTCT
TCTTTTATTCCGTCCGAACGGGCAAAACCGAACCATAATGGCGTTAGCTC
GCTAAAAACCCACGCTCATGTTGTTCCATTGTCGATCTATATAAGCCTTC
TCTCTGCGGCGATTGCTGCGGTTTTCATATTTAGCAGAGCAATAGCGGGA
CCTCCGGCTGATCAAAGCGGTCGACTGACTGCTGTTGATATTCACGGCGC
ACTGCCGTCGGCCTTCCTCGATTCCGCGCTTTTCTCCCTCGCTCTATCTC
CTTCTCGCCTCCTCAAGTCTGGCTTTCTTCCTATCTCGCCCTCTTCTTCT
CTCCCCAAATCTTCAGAAACGCGCGAGCAGAGCAGTCCGTCACTTCCCGT
CCACCAAGCCACAATGCCCTTGGCGCCCGTTCATCATTGGCTCTTTCTGG
CAGGTTCCGCCCCCGAGCGCACCACCACCTCCGCCGAACGTCCTCCCTCT
CCTCCGGGCTGCATGCGAACGGCCACCAGCTCCCGCTCACGGAGTGTGTA
TCAACATGCCCCTCTCGCCTCTGTCCTCGTCTGTTTCACCTCGAGCTCCC
CCGCCTCCCTACGGTAGCACCGGCGAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1533:22740..23568+

>mRNA_L-elsbetiae_contig1533.3782.1 ID=mRNA_L-elsbetiae_contig1533.3782.1|Name=mRNA_L-elsbetiae_contig1533.3782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig1533:22740..23568+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACCTTCGTCGGCCGTGCCCCCGATCCCCTTCTTCTTTTATTCCGTC
CGAACGGGCAAAACCGAACCATAATGGCGTTAGCTCGCTAAAAACCCACG
CTCATGTTGTTCCATTGTCGATCTATATAAGCCTTCTCTCTGCGGCGATT
GCTGCGGTTTTCATATTTAGCAGAGCAATAGCGGGACCTCCGGCTGATCA
AAGCGGTCGACTGACTGCTGTTGATATTCACGGCGCACTGCCGTCGGCCT
TCCTCGATTCCGCGCTTTTCTCCCTCGCTCTATCTCCTTCTCGCCTCCTC
AAGTCTGGCTTTCTTCCTATCTCGCCCTCTTCTTCTCTCCCCAAATCTTC
AGAAACGCGCGAGCAGAGCAGTCCGTCACTTCCCGTCCACCAAGCCACAA
TGCCCTTGGCGCCCGTTCATCATTGGCTCTTTCTGGCAGGTTCCGCCCCC
GAGCGCACCACCACCTCCGCCGAACGTCCTCCCTCTCCTCCGGGCTGCAT
GCGAACGGCCACCAGCTCCCGCTCACGGAGTGTGTATCAACATGCCCCTC
TCGCCTCTGTCCTCGTCTGTTTCACCTCGAGCTCCCCCGCCTCCCTACGG
TAGATGTACCTTCGTCGGCCGTGCCCCCGATCCCCTTCTTCTTTTATTCC
GTCCGAACGGGCAAAACCGAACCATAATGGCGTTAGCTCGCTAAAAACCC
ACGCTCATGTTGTTCCATTGTCGATCTATATAAGCCTTCTCTCTGCGGCG
ATTGCTGCGGTTTTCATATTTAGCAGAGCAATAGCGGGACCTCCGGCTGA
TCAAAGCGGTCGACTGACTGCTGTTGATATTCACGGCGCACTGCCGTCGG
CCTTCCTCGATTCCGCGCTTTTCTCCCTCGCTCTATCTCCTTCTCGCCTC
CTCAAGTCTGGCTTTCTTCCTATCTCGCCCTCTTCTTCTCTCCCCAAATC
TTCAGAAACGCGCGAGCAGAGCAGTCCGTCACTTCCCGTCCACCAAGCCA
CAATGCCCTTGGCGCCCGTTCATCATTGGCTCTTTCTGGCAGGTTCCGCC
CCCGAGCGCACCACCACCTCCGCCGAACGTCCTCCCTCTCCTCCGGGCTG
CATGCGAACGGCCACCAGCTCCCGCTCACGGAGTGTGTATCAACATGCCC
CTCTCGCCTCTGTCCTCGTCTGTTTCACCTCGAGCTCCCCCGCCTCCCTA
CGGTAG
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